Wall clock time and date at job start Tue Mar 31 2020 02:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47208 * 2 1 4 4 H 1.09002 * 110.53487 * 307.60829 * 3 2 1 5 5 C 1.54894 * 110.48824 * 70.21944 * 3 2 1 6 6 C 1.54893 * 102.74574 * 156.62145 * 5 3 2 7 7 C 1.54270 * 104.19644 * 322.06020 * 6 5 3 8 8 C 1.53872 * 106.60013 * 23.60927 * 7 6 5 9 9 H 1.08996 * 110.03537 * 240.71643 * 8 7 6 10 10 C 1.50701 * 110.03312 * 119.28161 * 8 7 6 11 11 O 1.21290 * 120.00158 * 242.83401 * 10 8 7 12 12 N 1.34772 * 119.99873 * 62.83345 * 10 8 7 13 13 C 1.37099 * 120.00209 * 179.97438 * 12 10 8 14 14 H 1.07997 * 120.00123 * 224.00552 * 13 12 10 15 15 C 1.38952 * 119.99761 * 44.01156 * 13 12 10 16 16 N 1.31413 * 119.99977 * 18.84056 * 15 13 12 17 17 Si 1.86795 * 119.99849 * 198.84777 * 15 13 12 18 18 H 1.48501 * 109.47599 * 89.99809 * 17 15 13 19 19 H 1.48505 * 109.47101 * 209.99768 * 17 15 13 20 20 H 1.48496 * 109.47273 * 329.99354 * 17 15 13 21 21 C 1.46503 * 119.99991 * 0.02562 * 12 10 8 22 22 C 1.54260 * 110.03572 * 242.39188 * 21 12 10 23 23 C 1.54890 * 104.19474 * 217.10762 * 22 21 12 24 24 C 1.54890 * 102.75270 * 37.94297 * 23 22 21 25 25 C 1.53883 * 110.03257 * 125.22349 * 21 12 10 26 26 H 1.08998 * 109.47302 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47020 * 300.00462 * 1 2 3 28 28 H 1.09000 * 109.47330 * 60.00277 * 1 2 3 29 29 H 1.08999 * 109.47020 * 239.99538 * 2 1 3 30 30 H 1.09005 * 109.46728 * 119.99348 * 2 1 3 31 31 H 1.08999 * 110.75800 * 274.93877 * 5 3 2 32 32 H 1.09002 * 110.75145 * 38.30994 * 5 3 2 33 33 H 1.08995 * 110.48458 * 203.38465 * 6 5 3 34 34 H 1.08993 * 110.59540 * 80.79183 * 6 5 3 35 35 H 1.09003 * 110.03241 * 264.32688 * 7 6 5 36 36 H 1.09000 * 110.07101 * 142.91572 * 7 6 5 37 37 H 0.96997 * 119.99919 * 174.95284 * 16 15 13 38 38 H 1.09000 * 110.01837 * 3.83893 * 21 12 10 39 39 H 1.09004 * 110.48265 * 335.78028 * 22 21 12 40 40 H 1.08997 * 110.49087 * 98.42740 * 22 21 12 41 41 H 1.08998 * 110.75515 * 279.62507 * 23 22 21 42 42 H 1.09003 * 110.75438 * 156.25797 * 23 22 21 43 43 H 1.08995 * 110.48532 * 203.37768 * 24 23 22 44 44 H 1.08998 * 110.59937 * 80.79001 * 24 23 22 45 45 H 1.08997 * 110.03187 * 238.57436 * 25 21 12 46 46 H 1.09007 * 110.03096 * 359.95433 * 25 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5802 2.0106 -0.8086 5 6 1.7578 2.1173 1.3653 6 6 2.8153 3.2481 1.4127 7 6 4.0702 2.6196 0.7723 8 6 3.5773 1.4716 -0.1259 9 1 3.9977 0.5250 0.2136 10 6 3.9732 1.7293 -1.5570 11 8 3.1190 1.8774 -2.4053 12 7 5.2764 1.7953 -1.8942 13 6 5.6366 2.0293 -3.1962 14 1 6.4304 1.4535 -3.6486 15 6 4.9804 3.0073 -3.9335 16 7 4.2949 3.9446 -3.3184 17 14 5.0725 2.9894 -5.7991 18 1 3.9524 2.1799 -6.3424 19 1 4.9735 4.3792 -6.3129 20 1 6.3649 2.3951 -6.2253 21 6 6.3081 1.6159 -0.8697 22 6 7.1518 2.9007 -0.7386 23 6 8.5900 2.3861 -0.4822 24 6 8.6744 1.1378 -1.3952 25 6 7.2762 0.4950 -1.2871 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 0.7494 2.5301 1.3911 32 1 1.9090 1.4126 2.1830 33 1 3.0177 3.5381 2.4437 34 1 2.4820 4.1092 0.8335 35 1 4.7299 2.2301 1.5477 36 1 4.5965 3.3628 0.1733 37 1 3.8981 4.6685 -3.8277 38 1 5.8457 1.3727 0.0870 39 1 7.1124 3.4787 -1.6619 40 1 6.8054 3.5004 0.1032 41 1 8.7204 2.1091 0.5639 42 1 9.3262 3.1328 -0.7798 43 1 9.4391 0.4510 -1.0326 44 1 8.8818 1.4291 -2.4249 45 1 7.2842 -0.2917 -0.5327 46 1 6.9779 0.0839 -2.2516 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449950235.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:46:10 Heat of formation + Delta-G solvation = -57.272787 kcal Electronic energy + Delta-G solvation = -24038.451710 eV Core-core repulsion = 20926.871450 eV Total energy + Delta-G solvation = -3111.580260 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.46852 -37.56931 -36.07173 -33.21058 -32.76005 -31.43375 -28.70895 -28.01469 -27.14134 -26.68872 -24.53048 -22.39081 -20.70028 -20.04210 -19.87247 -19.41680 -18.51770 -16.25720 -15.85225 -15.13229 -14.97820 -14.47898 -14.19865 -14.12664 -13.92834 -13.30848 -12.92908 -12.66237 -12.61170 -12.57729 -12.20706 -11.64525 -11.38344 -11.18873 -11.01226 -10.84066 -10.76620 -10.70807 -10.54977 -10.48864 -10.39895 -10.32339 -10.14062 -10.11713 -10.03337 -9.95286 -9.89570 -9.88360 -9.60684 -8.60890 -7.82416 -6.94004 -6.00503 -3.72414 3.35673 3.42284 3.46289 4.29203 4.49018 4.94127 5.05879 5.16931 5.23277 5.29751 5.31798 5.47363 5.53541 5.56646 5.65312 5.73196 5.88632 5.99568 6.03663 6.07380 6.10339 6.16289 6.16924 6.17512 6.20013 6.28052 6.28998 6.33618 6.35304 6.44723 6.47668 6.50995 6.57065 6.61617 6.63853 6.68491 6.80589 6.88702 6.91285 7.04726 7.14689 7.28349 7.74988 8.41654 9.21746 9.33902 9.82928 10.48277 11.08923 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.013619 B = 0.007970 C = 0.006019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.514275 B = 3512.327216 C = 4650.926633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.112 4.112 3 C -0.076 4.076 4 H 0.094 0.906 5 C -0.118 4.118 6 C -0.122 4.122 7 C -0.113 4.113 8 C -0.104 4.104 9 H 0.073 0.927 10 C 0.486 3.514 11 O -0.536 6.536 12 N -0.450 5.450 13 C -0.342 4.342 14 H 0.075 0.925 15 C 0.075 3.925 16 N -0.833 5.833 17 Si 0.905 3.095 18 H -0.279 1.279 19 H -0.289 1.289 20 H -0.276 1.276 21 C 0.129 3.871 22 C -0.125 4.125 23 C -0.123 4.123 24 C -0.117 4.117 25 C -0.132 4.132 26 H 0.046 0.954 27 H 0.050 0.950 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.056 0.944 36 H 0.077 0.923 37 H 0.261 0.739 38 H 0.070 0.930 39 H 0.089 0.911 40 H 0.051 0.949 41 H 0.055 0.945 42 H 0.057 0.943 43 H 0.051 0.949 44 H 0.065 0.935 45 H 0.050 0.950 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.506 -4.073 9.996 10.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.149 4.149 3 C -0.094 4.094 4 H 0.112 0.888 5 C -0.155 4.155 6 C -0.159 4.159 7 C -0.151 4.151 8 C -0.126 4.126 9 H 0.091 0.909 10 C 0.273 3.727 11 O -0.414 6.414 12 N -0.172 5.172 13 C -0.469 4.469 14 H 0.093 0.907 15 C -0.135 4.135 16 N -0.467 5.467 17 Si 0.733 3.267 18 H -0.206 1.206 19 H -0.216 1.216 20 H -0.201 1.201 21 C 0.024 3.976 22 C -0.164 4.164 23 C -0.161 4.161 24 C -0.154 4.154 25 C -0.170 4.170 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.096 0.904 37 H 0.071 0.929 38 H 0.088 0.912 39 H 0.107 0.893 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.084 0.916 45 H 0.069 0.931 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.888 -3.864 9.507 10.301 hybrid contribution 0.181 0.123 -0.854 0.882 sum 1.069 -3.740 8.653 9.487 Atomic orbital electron populations 1.21745 0.96427 1.00678 1.01639 1.21500 0.95383 0.96797 1.01246 1.21914 0.94242 0.95791 0.97502 0.88773 1.22557 0.98295 0.97328 0.97326 1.22315 0.95777 0.98297 0.99531 1.22210 0.97291 0.97837 0.97768 1.21921 0.96294 0.98489 0.95922 0.90888 1.19812 0.83369 0.81018 0.88543 1.90488 1.49038 1.50713 1.51123 1.43321 1.02430 1.64947 1.06478 1.18793 1.22285 1.19386 0.86429 0.90729 1.25170 0.95570 0.94063 0.98719 1.69826 1.31498 1.09502 1.35876 0.86339 0.78267 0.76981 0.85144 1.20554 1.21555 1.20098 1.21732 0.90059 0.93825 0.92028 1.22677 0.93162 0.98122 1.02420 1.22440 0.97771 0.97326 0.98542 1.22249 0.96564 0.96624 0.99992 1.22457 0.94965 0.97759 1.01853 0.93536 0.93125 0.92665 0.91956 0.92881 0.92257 0.92190 0.92528 0.91656 0.92559 0.90396 0.92941 0.91155 0.89274 0.93049 0.92583 0.92454 0.93052 0.91639 0.93137 0.90654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.79 37.16 0.36 -1.67 16 2 C -0.11 -1.77 5.28 -26.73 -0.14 -1.91 16 3 C -0.08 -1.37 2.18 -88.96 -0.19 -1.56 16 4 H 0.09 2.05 6.88 -51.93 -0.36 1.70 16 5 C -0.12 -1.75 5.67 -24.73 -0.14 -1.89 16 6 C -0.12 -1.91 6.83 -25.07 -0.17 -2.08 16 7 C -0.11 -1.99 4.81 -25.61 -0.12 -2.11 16 8 C -0.10 -2.03 1.97 -90.65 -0.18 -2.21 16 9 H 0.07 1.32 7.36 -51.93 -0.38 0.93 16 10 C 0.49 12.10 6.13 -10.99 -0.07 12.03 16 11 O -0.54 -15.65 13.16 5.55 0.07 -15.58 16 12 N -0.45 -10.92 2.44 -106.54 -0.26 -11.18 16 13 C -0.34 -9.18 7.53 -14.93 -0.11 -9.29 16 14 H 0.08 1.97 6.90 -52.49 -0.36 1.61 16 15 C 0.07 2.09 4.36 -17.47 -0.08 2.01 16 16 N -0.83 -24.38 11.76 55.50 0.65 -23.73 16 17 Si 0.90 22.15 29.60 -169.99 -5.03 17.12 16 18 H -0.28 -7.10 7.11 56.52 0.40 -6.69 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 C 0.13 2.52 2.37 -66.81 -0.16 2.36 16 22 C -0.13 -2.34 6.08 -25.07 -0.15 -2.50 16 23 C -0.12 -1.87 6.91 -24.74 -0.17 -2.04 16 24 C -0.12 -1.82 6.83 -25.07 -0.17 -1.99 16 25 C -0.13 -2.31 6.19 -25.61 -0.16 -2.47 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.63 7.55 -51.93 -0.39 0.24 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.05 0.74 8.02 -51.93 -0.42 0.33 16 31 H 0.06 0.83 8.06 -51.93 -0.42 0.41 16 32 H 0.06 0.80 7.97 -51.93 -0.41 0.38 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.06 0.85 7.65 -51.93 -0.40 0.46 16 36 H 0.08 1.61 6.28 -51.93 -0.33 1.28 16 37 H 0.26 7.41 8.32 -40.82 -0.34 7.07 16 38 H 0.07 1.27 4.60 -51.93 -0.24 1.03 16 39 H 0.09 2.00 7.22 -51.93 -0.37 1.63 16 40 H 0.05 0.91 7.57 -51.93 -0.39 0.52 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.07 1.48 6.65 -51.93 -0.35 1.14 16 LS Contribution 343.63 15.07 5.18 5.18 Total: -1.00 -30.67 343.63 -9.22 -39.89 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -8.18 Total: 3.61 kcal Atomic # 6 Polarization: -13.66 SS G_CDS: -1.65 Total: -15.31 kcal Atomic # 7 Polarization: -35.30 SS G_CDS: 0.39 Total: -34.91 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: 0.07 Total: -15.58 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.03 Total: 17.12 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.67 -9.22 -39.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449950235.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.386 kcal (2) G-P(sol) polarization free energy of solvation -30.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds