Wall clock time and date at job start Tue Mar 31 2020 02:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47208 * 2 1 4 4 H 1.09002 * 110.53487 * 307.60829 * 3 2 1 5 5 C 1.54894 * 110.48824 * 70.21944 * 3 2 1 6 6 C 1.54893 * 102.74574 * 156.62145 * 5 3 2 7 7 C 1.54270 * 104.19644 * 322.06020 * 6 5 3 8 8 C 1.53872 * 106.60013 * 23.60927 * 7 6 5 9 9 H 1.08996 * 110.03537 * 240.71643 * 8 7 6 10 10 C 1.50701 * 110.03312 * 119.28161 * 8 7 6 11 11 O 1.21290 * 120.00158 * 242.83401 * 10 8 7 12 12 N 1.34772 * 119.99873 * 62.83345 * 10 8 7 13 13 C 1.37099 * 120.00209 * 179.97438 * 12 10 8 14 14 H 1.07997 * 120.00123 * 224.00552 * 13 12 10 15 15 C 1.38952 * 119.99761 * 44.01156 * 13 12 10 16 16 N 1.31413 * 119.99977 * 18.84056 * 15 13 12 17 17 Si 1.86795 * 119.99849 * 198.84777 * 15 13 12 18 18 H 1.48501 * 109.47599 * 89.99809 * 17 15 13 19 19 H 1.48505 * 109.47101 * 209.99768 * 17 15 13 20 20 H 1.48496 * 109.47273 * 329.99354 * 17 15 13 21 21 C 1.46503 * 119.99991 * 0.02562 * 12 10 8 22 22 C 1.54260 * 110.03572 * 242.39188 * 21 12 10 23 23 C 1.54890 * 104.19474 * 217.10762 * 22 21 12 24 24 C 1.54890 * 102.75270 * 37.94297 * 23 22 21 25 25 C 1.53883 * 110.03257 * 125.22349 * 21 12 10 26 26 H 1.08998 * 109.47302 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47020 * 300.00462 * 1 2 3 28 28 H 1.09000 * 109.47330 * 60.00277 * 1 2 3 29 29 H 1.08999 * 109.47020 * 239.99538 * 2 1 3 30 30 H 1.09005 * 109.46728 * 119.99348 * 2 1 3 31 31 H 1.08999 * 110.75800 * 274.93877 * 5 3 2 32 32 H 1.09002 * 110.75145 * 38.30994 * 5 3 2 33 33 H 1.08995 * 110.48458 * 203.38465 * 6 5 3 34 34 H 1.08993 * 110.59540 * 80.79183 * 6 5 3 35 35 H 1.09003 * 110.03241 * 264.32688 * 7 6 5 36 36 H 1.09000 * 110.07101 * 142.91572 * 7 6 5 37 37 H 0.96997 * 119.99919 * 174.95284 * 16 15 13 38 38 H 1.09000 * 110.01837 * 3.83893 * 21 12 10 39 39 H 1.09004 * 110.48265 * 335.78028 * 22 21 12 40 40 H 1.08997 * 110.49087 * 98.42740 * 22 21 12 41 41 H 1.08998 * 110.75515 * 279.62507 * 23 22 21 42 42 H 1.09003 * 110.75438 * 156.25797 * 23 22 21 43 43 H 1.08995 * 110.48532 * 203.37768 * 24 23 22 44 44 H 1.08998 * 110.59937 * 80.79001 * 24 23 22 45 45 H 1.08997 * 110.03187 * 238.57436 * 25 21 12 46 46 H 1.09007 * 110.03096 * 359.95433 * 25 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5802 2.0106 -0.8086 5 6 1.7578 2.1173 1.3653 6 6 2.8153 3.2481 1.4127 7 6 4.0702 2.6196 0.7723 8 6 3.5773 1.4716 -0.1259 9 1 3.9977 0.5250 0.2136 10 6 3.9732 1.7293 -1.5570 11 8 3.1190 1.8774 -2.4053 12 7 5.2764 1.7953 -1.8942 13 6 5.6366 2.0293 -3.1962 14 1 6.4304 1.4535 -3.6486 15 6 4.9804 3.0073 -3.9335 16 7 4.2949 3.9446 -3.3184 17 14 5.0725 2.9894 -5.7991 18 1 3.9524 2.1799 -6.3424 19 1 4.9735 4.3792 -6.3129 20 1 6.3649 2.3951 -6.2253 21 6 6.3081 1.6159 -0.8697 22 6 7.1518 2.9007 -0.7386 23 6 8.5900 2.3861 -0.4822 24 6 8.6744 1.1378 -1.3952 25 6 7.2762 0.4950 -1.2871 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 0.7494 2.5301 1.3911 32 1 1.9090 1.4126 2.1830 33 1 3.0177 3.5381 2.4437 34 1 2.4820 4.1092 0.8335 35 1 4.7299 2.2301 1.5477 36 1 4.5965 3.3628 0.1733 37 1 3.8981 4.6685 -3.8277 38 1 5.8457 1.3727 0.0870 39 1 7.1124 3.4787 -1.6619 40 1 6.8054 3.5004 0.1032 41 1 8.7204 2.1091 0.5639 42 1 9.3262 3.1328 -0.7798 43 1 9.4391 0.4510 -1.0326 44 1 8.8818 1.4291 -2.4249 45 1 7.2842 -0.2917 -0.5327 46 1 6.9779 0.0839 -2.2516 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449950235.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:46:09 Heat of formation + Delta-G solvation = -73.697441 kcal Electronic energy + Delta-G solvation = -24039.163936 eV Core-core repulsion = 20926.871450 eV Total energy + Delta-G solvation = -3112.292486 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.13391 -39.01629 -37.78587 -35.09554 -34.12944 -33.32399 -30.24250 -29.42405 -28.51653 -28.17183 -26.45972 -23.74136 -22.25981 -21.38496 -21.33567 -20.96540 -20.17127 -18.09049 -17.57464 -16.82574 -16.51562 -16.12747 -15.73038 -15.60767 -15.28245 -14.98326 -14.63751 -14.07382 -13.97592 -13.95214 -13.76229 -13.35333 -12.91503 -12.79803 -12.73474 -12.55879 -12.40513 -12.14493 -12.06781 -12.00124 -11.84494 -11.79118 -11.67895 -11.50253 -11.41152 -11.35196 -11.30340 -11.19288 -11.14679 -10.68968 -9.80404 -8.94728 -8.13928 -5.87013 1.32565 1.41174 1.44808 2.30621 2.58767 3.22940 3.29902 3.68695 3.81556 3.90791 3.92693 4.01046 4.21580 4.30046 4.40621 4.49694 4.54648 4.56809 4.66353 4.71777 4.76160 4.80693 4.83828 4.86239 4.91669 4.92372 4.97619 5.02591 5.10763 5.13109 5.15901 5.21187 5.25976 5.29868 5.31095 5.39181 5.47104 5.50804 5.53580 5.61540 5.62798 5.71156 5.72524 6.30550 7.14709 7.35826 7.85268 8.52281 8.95388 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.013619 B = 0.007970 C = 0.006019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.514275 B = 3512.327216 C = 4650.926633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.108 4.108 3 C -0.078 4.078 4 H 0.042 0.958 5 C -0.104 4.104 6 C -0.120 4.120 7 C -0.108 4.108 8 C -0.099 4.099 9 H 0.095 0.905 10 C 0.469 3.531 11 O -0.593 6.593 12 N -0.461 5.461 13 C -0.344 4.344 14 H 0.073 0.927 15 C 0.024 3.976 16 N -0.868 5.868 17 Si 0.957 3.043 18 H -0.295 1.295 19 H -0.284 1.284 20 H -0.256 1.256 21 C 0.122 3.878 22 C -0.123 4.123 23 C -0.110 4.110 24 C -0.113 4.113 25 C -0.130 4.130 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.031 0.969 29 H 0.032 0.968 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.036 0.964 35 H 0.093 0.907 36 H 0.039 0.961 37 H 0.253 0.747 38 H 0.091 0.909 39 H 0.040 0.960 40 H 0.057 0.943 41 H 0.088 0.912 42 H 0.066 0.934 43 H 0.085 0.915 44 H 0.045 0.955 45 H 0.082 0.918 46 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.790 -5.673 13.351 14.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.145 4.145 3 C -0.097 4.097 4 H 0.061 0.939 5 C -0.141 4.141 6 C -0.157 4.157 7 C -0.146 4.146 8 C -0.121 4.121 9 H 0.113 0.887 10 C 0.258 3.742 11 O -0.475 6.475 12 N -0.182 5.182 13 C -0.472 4.472 14 H 0.091 0.909 15 C -0.182 4.182 16 N -0.503 5.503 17 Si 0.783 3.217 18 H -0.223 1.223 19 H -0.210 1.210 20 H -0.180 1.180 21 C 0.018 3.982 22 C -0.162 4.162 23 C -0.148 4.148 24 C -0.151 4.151 25 C -0.168 4.168 26 H 0.084 0.916 27 H 0.089 0.911 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.102 0.898 31 H 0.087 0.913 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.055 0.945 35 H 0.111 0.889 36 H 0.058 0.942 37 H 0.062 0.938 38 H 0.109 0.891 39 H 0.059 0.941 40 H 0.076 0.924 41 H 0.106 0.894 42 H 0.085 0.915 43 H 0.104 0.896 44 H 0.064 0.936 45 H 0.101 0.899 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.229 -5.473 12.875 14.166 hybrid contribution -0.195 0.576 -1.897 1.992 sum 2.033 -4.897 10.977 12.191 Atomic orbital electron populations 1.21714 0.94940 1.01932 1.01506 1.21476 0.96742 0.95106 1.01206 1.21862 0.92900 0.96979 0.97957 0.93939 1.22523 0.98547 0.97172 0.95908 1.22317 0.95019 0.97563 1.00835 1.22174 0.98462 0.96251 0.97716 1.21928 0.97604 1.00156 0.92370 0.88702 1.20846 0.83022 0.79699 0.90620 1.90447 1.50628 1.53078 1.53378 1.43575 1.03609 1.64208 1.06773 1.18988 1.21526 1.18436 0.88223 0.90907 1.25902 0.95748 0.94133 1.02398 1.69948 1.33316 1.10267 1.36819 0.85515 0.78330 0.76936 0.80907 1.22255 1.20983 1.17967 1.22036 0.89473 0.95121 0.91564 1.22572 0.95996 0.97311 1.00312 1.22413 0.95041 0.97047 1.00302 1.22239 0.96174 0.97367 0.99287 1.22444 0.95452 0.97768 1.01167 0.91575 0.91101 0.94974 0.94954 0.89771 0.91277 0.88794 0.88906 0.94488 0.88884 0.94222 0.93772 0.89079 0.94065 0.92383 0.89366 0.91532 0.89617 0.93646 0.89950 0.93660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.76 9.79 71.98 0.70 -3.06 16 2 C -0.11 -3.28 5.28 30.59 0.16 -3.12 16 3 C -0.08 -2.79 2.18 -9.72 -0.02 -2.81 16 4 H 0.04 1.97 6.88 -2.39 -0.02 1.95 16 5 C -0.10 -2.80 5.67 31.89 0.18 -2.62 16 6 C -0.12 -3.52 6.83 31.67 0.22 -3.30 16 7 C -0.11 -3.63 4.81 31.32 0.15 -3.48 16 8 C -0.10 -3.80 1.97 -10.82 -0.02 -3.82 16 9 H 0.09 3.19 7.36 -2.39 -0.02 3.18 16 10 C 0.47 24.34 6.13 87.66 0.54 24.87 16 11 O -0.59 -37.00 13.16 -3.06 -0.04 -37.04 16 12 N -0.46 -23.08 2.44 -609.38 -1.48 -24.56 16 13 C -0.34 -19.28 7.53 84.04 0.63 -18.65 16 14 H 0.07 4.00 6.90 -2.91 -0.02 3.98 16 15 C 0.02 1.40 4.36 84.93 0.37 1.77 16 16 N -0.87 -54.00 11.76 21.66 0.25 -53.74 16 17 Si 0.96 47.55 29.60 68.60 2.03 49.58 16 18 H -0.30 -15.33 7.11 99.48 0.71 -14.63 16 19 H -0.28 -13.72 7.11 99.48 0.71 -13.02 16 20 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 21 C 0.12 4.67 2.37 45.72 0.11 4.78 16 22 C -0.12 -4.56 6.08 31.67 0.19 -4.37 16 23 C -0.11 -3.03 6.91 31.89 0.22 -2.81 16 24 C -0.11 -3.23 6.83 31.67 0.22 -3.02 16 25 C -0.13 -4.32 6.19 31.32 0.19 -4.12 16 26 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.07 1.56 7.55 -2.39 -0.02 1.55 16 28 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.08 2.04 8.02 -2.38 -0.02 2.02 16 31 H 0.07 1.74 8.06 -2.39 -0.02 1.73 16 32 H 0.09 1.96 7.97 -2.39 -0.02 1.94 16 33 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.09 2.43 7.65 -2.39 -0.02 2.41 16 36 H 0.04 1.64 6.28 -2.39 -0.01 1.63 16 37 H 0.25 15.39 8.32 -92.71 -0.77 14.62 16 38 H 0.09 3.06 4.60 -2.39 -0.01 3.05 16 39 H 0.04 1.91 7.22 -2.38 -0.02 1.90 16 40 H 0.06 2.01 7.57 -2.39 -0.02 2.00 16 41 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 46 H 0.04 1.77 6.65 -2.38 -0.02 1.76 16 Total: -1.00 -74.04 343.63 5.53 -68.51 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: 0.93 Total: 21.00 kcal Atomic # 6 Polarization: -27.58 SS G_CDS: 3.84 Total: -23.74 kcal Atomic # 7 Polarization: -77.08 SS G_CDS: -1.23 Total: -78.31 kcal Atomic # 8 Polarization: -37.00 SS G_CDS: -0.04 Total: -37.04 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 2.03 Total: 49.58 kcal Total: -74.04 5.53 -68.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449950235.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.190 kcal (2) G-P(sol) polarization free energy of solvation -74.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds