Wall clock time and date at job start Tue Mar 31 2020 02:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47627 * 2 1 4 4 H 1.08998 * 110.05707 * 53.56828 * 3 2 1 5 5 C 1.54267 * 110.02768 * 292.15347 * 3 2 1 6 6 C 1.54886 * 104.19371 * 217.10291 * 5 3 2 7 7 C 1.54896 * 102.74988 * 37.94584 * 6 5 3 8 8 C 1.53868 * 110.03377 * 174.98759 * 3 2 1 9 9 H 1.08997 * 110.07630 * 238.58966 * 8 3 2 10 10 C 1.50701 * 110.03184 * 359.97438 * 8 3 2 11 11 O 1.21296 * 120.00175 * 57.27522 * 10 8 3 12 12 N 1.34780 * 119.99880 * 237.27285 * 10 8 3 13 13 C 1.37103 * 119.99509 * 183.86286 * 12 10 8 14 14 H 1.07996 * 120.00343 * 38.10840 * 13 12 10 15 15 C 1.38950 * 119.99428 * 218.09883 * 13 12 10 16 16 N 1.31404 * 120.00220 * 24.07857 * 15 13 12 17 17 Si 1.86800 * 119.99708 * 204.07253 * 15 13 12 18 18 H 1.48503 * 109.47444 * 270.00271 * 17 15 13 19 19 H 1.48506 * 109.47369 * 30.00514 * 17 15 13 20 20 H 1.48501 * 109.47147 * 150.00440 * 17 15 13 21 21 C 1.46498 * 120.00202 * 3.86678 * 12 10 8 22 22 C 1.54268 * 110.02983 * 50.73392 * 21 12 10 23 23 C 1.54889 * 104.19196 * 217.10822 * 22 21 12 24 24 C 1.54887 * 102.75427 * 37.94435 * 23 22 21 25 25 C 1.53870 * 110.03024 * 293.56846 * 21 12 10 26 26 H 1.09000 * 109.46852 * 59.99887 * 1 2 3 27 27 H 1.08994 * 109.47562 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46612 * 300.00595 * 1 2 3 29 29 H 1.08996 * 109.46910 * 239.99134 * 2 1 3 30 30 H 1.09009 * 109.46862 * 119.99854 * 2 1 3 31 31 H 1.08997 * 110.48722 * 98.42718 * 5 3 2 32 32 H 1.09000 * 110.48677 * 335.78488 * 5 3 2 33 33 H 1.08998 * 110.76105 * 279.62545 * 6 5 3 34 34 H 1.09005 * 110.91419 * 156.32872 * 6 5 3 35 35 H 1.08995 * 110.48561 * 203.37831 * 7 6 5 36 36 H 1.09005 * 110.59762 * 80.78752 * 7 6 5 37 37 H 0.97003 * 120.00543 * 2.02980 * 16 15 13 38 38 H 1.08998 * 110.01640 * 172.17754 * 21 12 10 39 39 H 1.08998 * 110.48984 * 335.78311 * 22 21 12 40 40 H 1.08995 * 110.48218 * 98.42903 * 22 21 12 41 41 H 1.09004 * 110.75203 * 279.62376 * 23 22 21 42 42 H 1.09004 * 110.75361 * 156.26152 * 23 22 21 43 43 H 1.08999 * 110.48794 * 203.38184 * 24 23 22 44 44 H 1.08994 * 110.48604 * 80.73091 * 24 23 22 45 45 H 1.09000 * 110.03777 * 238.56761 * 25 21 12 46 46 H 1.09005 * 110.03305 * 359.95179 * 25 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5915 1.9976 0.8238 5 6 1.7010 2.1228 -1.3424 6 6 2.9294 3.0197 -1.6346 7 6 4.1129 2.1492 -1.1437 8 6 3.5735 1.4593 0.1263 9 1 3.8699 2.0221 1.0114 10 6 4.1000 0.0498 0.2117 11 8 3.8546 -0.7439 -0.6722 12 7 4.8435 -0.3289 1.2701 13 6 5.3885 -1.5863 1.3102 14 1 5.7778 -2.0351 0.4084 15 6 5.4401 -2.2831 2.5113 16 7 4.5927 -1.9968 3.4739 17 14 6.7139 -3.6271 2.7573 18 1 6.1530 -4.9282 2.3128 19 1 7.9262 -3.3122 1.9595 20 1 7.0753 -3.7092 4.1953 21 6 5.0692 0.6029 2.3778 22 6 3.7253 1.1899 2.8567 23 6 4.0582 2.6603 3.2119 24 6 5.0681 3.0587 2.1072 25 6 5.9229 1.7911 1.9013 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3632 0.5140 0.8900 29 1 1.8933 -0.5140 -0.8899 30 1 1.8933 -0.5139 0.8901 31 1 0.8003 2.7290 -1.2460 32 1 1.5778 1.3769 -2.1276 33 1 2.8726 3.9493 -1.0681 34 1 3.0169 3.2242 -2.7017 35 1 4.9722 2.7748 -0.9024 36 1 4.3813 1.4075 -1.8961 37 1 3.9123 -1.3194 3.3357 38 1 5.5681 0.0908 3.2005 39 1 2.9847 1.1487 2.0580 40 1 3.3681 0.6561 3.7373 41 1 4.5186 2.7247 4.1978 42 1 3.1643 3.2820 3.1605 43 1 5.6909 3.8887 2.4410 44 1 4.5444 3.3192 1.1875 45 1 6.8358 1.8562 2.4933 46 1 6.1701 1.6739 0.8461 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449950236.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:46:14 Heat of formation + Delta-G solvation = -34.806122 kcal Electronic energy + Delta-G solvation = -24820.672735 eV Core-core repulsion = 21710.066702 eV Total energy + Delta-G solvation = -3110.606032 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.62657 -37.56386 -36.44633 -34.00789 -32.70793 -31.21911 -28.87095 -28.35634 -27.20080 -27.08444 -24.24310 -22.32986 -21.28119 -20.63513 -19.91152 -19.77890 -18.09913 -17.48071 -15.97213 -15.52043 -14.91034 -14.46577 -14.25626 -14.06859 -13.97673 -13.71893 -13.54759 -13.00588 -12.71675 -12.42285 -12.26120 -11.92464 -11.46999 -11.30346 -10.95797 -10.89355 -10.88936 -10.74845 -10.73933 -10.65828 -10.53773 -10.47871 -10.28260 -10.20174 -10.17305 -10.07761 -9.93223 -9.70891 -9.44666 -8.76289 -8.04184 -7.55811 -6.55856 -3.88592 3.35860 3.38190 3.56430 3.90258 4.28460 4.72541 4.91780 4.99114 5.01554 5.04047 5.08054 5.26437 5.31178 5.54237 5.68608 5.73381 5.76602 5.81485 5.86599 5.91050 5.92428 5.96103 6.01573 6.04076 6.09421 6.11333 6.14598 6.18439 6.21329 6.28410 6.35003 6.40593 6.43247 6.50891 6.55872 6.61783 6.67165 6.73345 6.82006 6.88058 6.95854 7.18312 8.08165 8.19108 8.82182 9.07190 9.51416 10.05570 10.75203 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.017453 B = 0.007731 C = 0.006696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.921250 B = 3620.843306 C = 4180.644736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C -0.071 4.071 4 H 0.064 0.936 5 C -0.114 4.114 6 C -0.122 4.122 7 C -0.111 4.111 8 C -0.150 4.150 9 H 0.125 0.875 10 C 0.474 3.526 11 O -0.573 6.573 12 N -0.451 5.451 13 C -0.397 4.397 14 H 0.079 0.921 15 C 0.007 3.993 16 N -0.882 5.882 17 Si 1.076 2.924 18 H -0.286 1.286 19 H -0.285 1.285 20 H -0.281 1.281 21 C 0.132 3.868 22 C -0.157 4.157 23 C -0.123 4.123 24 C -0.137 4.137 25 C -0.139 4.139 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.044 0.956 29 H 0.092 0.908 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.277 0.723 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.077 0.923 45 H 0.063 0.937 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.713 11.615 -2.151 12.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.090 4.090 4 H 0.082 0.918 5 C -0.151 4.151 6 C -0.160 4.160 7 C -0.149 4.149 8 C -0.171 4.171 9 H 0.142 0.858 10 C 0.263 3.737 11 O -0.457 6.457 12 N -0.170 5.170 13 C -0.524 4.524 14 H 0.097 0.903 15 C -0.200 4.200 16 N -0.517 5.517 17 Si 0.902 3.098 18 H -0.212 1.212 19 H -0.211 1.211 20 H -0.207 1.207 21 C 0.026 3.974 22 C -0.195 4.195 23 C -0.161 4.161 24 C -0.174 4.174 25 C -0.177 4.177 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.111 0.889 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.116 0.884 39 H 0.105 0.895 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.095 0.905 45 H 0.082 0.918 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.234 10.069 -1.467 10.418 hybrid contribution -0.570 1.078 -0.931 1.534 sum -2.804 11.147 -2.398 11.742 Atomic orbital electron populations 1.21825 0.97351 1.00884 1.00604 1.21978 0.93927 0.95819 1.04538 1.21573 0.93696 0.96713 0.96970 0.91762 1.22411 0.97016 0.98196 0.97520 1.22465 0.95443 0.97838 1.00216 1.22301 0.97119 0.98242 0.97193 1.22991 0.95849 0.96999 1.01273 0.85790 1.20051 0.79929 0.88802 0.84923 1.90451 1.59670 1.54830 1.40702 1.43718 1.44237 1.12165 1.16887 1.20202 1.40400 0.93187 0.98638 0.90315 1.26344 0.99662 1.01008 0.93003 1.70727 1.14083 1.30273 1.36642 0.83409 0.75176 0.75040 0.76155 1.21232 1.21066 1.20673 1.21713 0.94227 0.89699 0.91736 1.23313 0.98781 0.95034 1.02350 1.22475 0.98582 0.96376 0.98698 1.22633 0.97936 0.97690 0.99153 1.22738 0.98611 0.94484 1.01896 0.93312 0.93315 0.93692 0.88925 0.92151 0.92376 0.91398 0.91983 0.92031 0.92248 0.91038 0.91185 0.88445 0.89468 0.91269 0.91439 0.91858 0.91975 0.90452 0.91820 0.91394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 9.77 37.16 0.36 -1.97 16 2 C -0.13 -2.42 3.84 -26.73 -0.10 -2.52 16 3 C -0.07 -1.19 2.02 -89.50 -0.18 -1.37 16 4 H 0.06 1.00 7.68 -51.93 -0.40 0.60 16 5 C -0.11 -1.64 5.53 -25.07 -0.14 -1.78 16 6 C -0.12 -1.64 6.91 -24.74 -0.17 -1.81 16 7 C -0.11 -1.82 5.99 -25.07 -0.15 -1.97 16 8 C -0.15 -2.76 1.18 -90.66 -0.11 -2.87 16 9 H 0.12 2.10 0.86 -51.93 -0.04 2.05 16 10 C 0.47 11.28 4.03 -10.98 -0.04 11.24 16 11 O -0.57 -15.69 13.70 5.54 0.08 -15.61 16 12 N -0.45 -11.23 2.21 -106.54 -0.24 -11.47 16 13 C -0.40 -11.16 8.82 -14.93 -0.13 -11.29 16 14 H 0.08 2.36 7.84 -52.49 -0.41 1.95 16 15 C 0.01 0.18 4.66 -17.47 -0.08 0.10 16 16 N -0.88 -24.72 12.60 55.50 0.70 -24.02 16 17 Si 1.08 24.29 29.98 -169.99 -5.10 19.20 16 18 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 20 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 21 C 0.13 2.79 2.17 -66.81 -0.14 2.65 16 22 C -0.16 -2.90 5.25 -25.07 -0.13 -3.03 16 23 C -0.12 -1.77 6.72 -24.74 -0.17 -1.94 16 24 C -0.14 -1.93 6.12 -25.07 -0.15 -2.08 16 25 C -0.14 -2.43 5.75 -25.61 -0.15 -2.58 16 26 H 0.05 0.68 7.51 -51.93 -0.39 0.29 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.09 2.05 5.99 -51.93 -0.31 1.74 16 30 H 0.06 1.37 6.95 -51.92 -0.36 1.01 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 1.05 7.76 -51.93 -0.40 0.64 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.89 7.61 -51.93 -0.40 0.49 16 36 H 0.07 1.35 7.57 -51.93 -0.39 0.95 16 37 H 0.28 7.68 5.86 -40.82 -0.24 7.44 16 38 H 0.10 2.32 6.33 -51.93 -0.33 1.99 16 39 H 0.09 1.65 3.24 -51.93 -0.17 1.48 16 40 H 0.07 1.35 7.38 -51.93 -0.38 0.97 16 41 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.08 1.07 5.32 -51.93 -0.28 0.79 16 45 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.07 1.27 7.27 -51.93 -0.38 0.89 16 LS Contribution 327.04 15.07 4.93 4.93 Total: -1.00 -30.59 327.04 -8.60 -39.19 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -7.48 Total: 8.99 kcal Atomic # 6 Polarization: -19.72 SS G_CDS: -1.49 Total: -21.21 kcal Atomic # 7 Polarization: -35.95 SS G_CDS: 0.46 Total: -35.49 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: 0.08 Total: -15.61 kcal Atomic # 14 Polarization: 24.29 SS G_CDS: -5.10 Total: 19.20 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.59 -8.60 -39.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449950236.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.386 kcal (2) G-P(sol) polarization free energy of solvation -30.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds