Wall clock time and date at job start Tue Mar 31 2020 02:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47627 * 2 1 4 4 H 1.08998 * 110.05707 * 53.56828 * 3 2 1 5 5 C 1.54267 * 110.02768 * 292.15347 * 3 2 1 6 6 C 1.54886 * 104.19371 * 217.10291 * 5 3 2 7 7 C 1.54896 * 102.74988 * 37.94584 * 6 5 3 8 8 C 1.53868 * 110.03377 * 174.98759 * 3 2 1 9 9 H 1.08997 * 110.07630 * 238.58966 * 8 3 2 10 10 C 1.50701 * 110.03184 * 359.97438 * 8 3 2 11 11 O 1.21296 * 120.00175 * 57.27522 * 10 8 3 12 12 N 1.34780 * 119.99880 * 237.27285 * 10 8 3 13 13 C 1.37103 * 119.99509 * 183.86286 * 12 10 8 14 14 H 1.07996 * 120.00343 * 38.10840 * 13 12 10 15 15 C 1.38950 * 119.99428 * 218.09883 * 13 12 10 16 16 N 1.31404 * 120.00220 * 24.07857 * 15 13 12 17 17 Si 1.86800 * 119.99708 * 204.07253 * 15 13 12 18 18 H 1.48503 * 109.47444 * 270.00271 * 17 15 13 19 19 H 1.48506 * 109.47369 * 30.00514 * 17 15 13 20 20 H 1.48501 * 109.47147 * 150.00440 * 17 15 13 21 21 C 1.46498 * 120.00202 * 3.86678 * 12 10 8 22 22 C 1.54268 * 110.02983 * 50.73392 * 21 12 10 23 23 C 1.54889 * 104.19196 * 217.10822 * 22 21 12 24 24 C 1.54887 * 102.75427 * 37.94435 * 23 22 21 25 25 C 1.53870 * 110.03024 * 293.56846 * 21 12 10 26 26 H 1.09000 * 109.46852 * 59.99887 * 1 2 3 27 27 H 1.08994 * 109.47562 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46612 * 300.00595 * 1 2 3 29 29 H 1.08996 * 109.46910 * 239.99134 * 2 1 3 30 30 H 1.09009 * 109.46862 * 119.99854 * 2 1 3 31 31 H 1.08997 * 110.48722 * 98.42718 * 5 3 2 32 32 H 1.09000 * 110.48677 * 335.78488 * 5 3 2 33 33 H 1.08998 * 110.76105 * 279.62545 * 6 5 3 34 34 H 1.09005 * 110.91419 * 156.32872 * 6 5 3 35 35 H 1.08995 * 110.48561 * 203.37831 * 7 6 5 36 36 H 1.09005 * 110.59762 * 80.78752 * 7 6 5 37 37 H 0.97003 * 120.00543 * 2.02980 * 16 15 13 38 38 H 1.08998 * 110.01640 * 172.17754 * 21 12 10 39 39 H 1.08998 * 110.48984 * 335.78311 * 22 21 12 40 40 H 1.08995 * 110.48218 * 98.42903 * 22 21 12 41 41 H 1.09004 * 110.75203 * 279.62376 * 23 22 21 42 42 H 1.09004 * 110.75361 * 156.26152 * 23 22 21 43 43 H 1.08999 * 110.48794 * 203.38184 * 24 23 22 44 44 H 1.08994 * 110.48604 * 80.73091 * 24 23 22 45 45 H 1.09000 * 110.03777 * 238.56761 * 25 21 12 46 46 H 1.09005 * 110.03305 * 359.95179 * 25 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5915 1.9976 0.8238 5 6 1.7010 2.1228 -1.3424 6 6 2.9294 3.0197 -1.6346 7 6 4.1129 2.1492 -1.1437 8 6 3.5735 1.4593 0.1263 9 1 3.8699 2.0221 1.0114 10 6 4.1000 0.0498 0.2117 11 8 3.8546 -0.7439 -0.6722 12 7 4.8435 -0.3289 1.2701 13 6 5.3885 -1.5863 1.3102 14 1 5.7778 -2.0351 0.4084 15 6 5.4401 -2.2831 2.5113 16 7 4.5927 -1.9968 3.4739 17 14 6.7139 -3.6271 2.7573 18 1 6.1530 -4.9282 2.3128 19 1 7.9262 -3.3122 1.9595 20 1 7.0753 -3.7092 4.1953 21 6 5.0692 0.6029 2.3778 22 6 3.7253 1.1899 2.8567 23 6 4.0582 2.6603 3.2119 24 6 5.0681 3.0587 2.1072 25 6 5.9229 1.7911 1.9013 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3632 0.5140 0.8900 29 1 1.8933 -0.5140 -0.8899 30 1 1.8933 -0.5139 0.8901 31 1 0.8003 2.7290 -1.2460 32 1 1.5778 1.3769 -2.1276 33 1 2.8726 3.9493 -1.0681 34 1 3.0169 3.2242 -2.7017 35 1 4.9722 2.7748 -0.9024 36 1 4.3813 1.4075 -1.8961 37 1 3.9123 -1.3194 3.3357 38 1 5.5681 0.0908 3.2005 39 1 2.9847 1.1487 2.0580 40 1 3.3681 0.6561 3.7373 41 1 4.5186 2.7247 4.1978 42 1 3.1643 3.2820 3.1605 43 1 5.6909 3.8887 2.4410 44 1 4.5444 3.3192 1.1875 45 1 6.8358 1.8562 2.4933 46 1 6.1701 1.6739 0.8461 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449950236.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:46:13 Heat of formation + Delta-G solvation = -51.843114 kcal Electronic energy + Delta-G solvation = -24821.411514 eV Core-core repulsion = 21710.066702 eV Total energy + Delta-G solvation = -3111.344812 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.23214 -39.03378 -38.17080 -35.88622 -34.08080 -33.19803 -30.30077 -29.72381 -28.74225 -28.39546 -26.20329 -23.79449 -22.82158 -21.95751 -21.45246 -21.11887 -19.94515 -19.11681 -17.58414 -17.08352 -16.44125 -16.17367 -15.91723 -15.60082 -15.57112 -15.26088 -15.09536 -14.45695 -14.13932 -13.95497 -13.79359 -13.37450 -13.02139 -12.81935 -12.65898 -12.53437 -12.30998 -12.05959 -12.04303 -12.01984 -11.94047 -11.91103 -11.80467 -11.69239 -11.64691 -11.55644 -11.42853 -11.33267 -10.87067 -10.74005 -9.96562 -9.57498 -8.75524 -6.09667 1.47248 1.50848 1.75649 2.07960 2.39600 2.92828 3.05869 3.60558 3.68582 3.70132 3.73128 3.81156 4.04237 4.23161 4.28102 4.39628 4.43643 4.45617 4.50979 4.60407 4.63550 4.65627 4.66640 4.71026 4.78003 4.80111 4.84579 4.91059 4.95298 5.04590 5.07302 5.13021 5.17514 5.20403 5.24303 5.29932 5.31943 5.39320 5.40469 5.46560 5.50658 5.63112 5.84415 6.00626 6.78987 7.02012 7.50585 8.08605 8.54670 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.017453 B = 0.007731 C = 0.006696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.921250 B = 3620.843306 C = 4180.644736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.118 4.118 3 C -0.072 4.072 4 H 0.090 0.910 5 C -0.111 4.111 6 C -0.109 4.109 7 C -0.114 4.114 8 C -0.144 4.144 9 H 0.144 0.856 10 C 0.466 3.534 11 O -0.624 6.624 12 N -0.468 5.468 13 C -0.424 4.424 14 H 0.044 0.956 15 C -0.028 4.028 16 N -0.895 5.895 17 Si 1.120 2.880 18 H -0.281 1.281 19 H -0.273 1.273 20 H -0.267 1.267 21 C 0.125 3.875 22 C -0.157 4.157 23 C -0.112 4.112 24 C -0.126 4.126 25 C -0.136 4.136 26 H 0.073 0.927 27 H 0.040 0.960 28 H 0.064 0.936 29 H 0.053 0.947 30 H 0.010 0.990 31 H 0.093 0.907 32 H 0.048 0.952 33 H 0.095 0.905 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.034 0.966 37 H 0.268 0.732 38 H 0.062 0.938 39 H 0.082 0.918 40 H 0.048 0.952 41 H 0.078 0.922 42 H 0.096 0.904 43 H 0.098 0.902 44 H 0.088 0.912 45 H 0.073 0.927 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.505 15.566 -1.658 16.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.156 4.156 3 C -0.090 4.090 4 H 0.109 0.891 5 C -0.148 4.148 6 C -0.147 4.147 7 C -0.152 4.152 8 C -0.164 4.164 9 H 0.161 0.839 10 C 0.258 3.742 11 O -0.510 6.510 12 N -0.187 5.187 13 C -0.552 4.552 14 H 0.062 0.938 15 C -0.231 4.231 16 N -0.530 5.530 17 Si 0.941 3.059 18 H -0.207 1.207 19 H -0.198 1.198 20 H -0.192 1.192 21 C 0.021 3.979 22 C -0.195 4.195 23 C -0.150 4.150 24 C -0.163 4.163 25 C -0.175 4.175 26 H 0.092 0.908 27 H 0.059 0.941 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.029 0.971 31 H 0.112 0.888 32 H 0.067 0.933 33 H 0.114 0.886 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.053 0.947 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.100 0.900 40 H 0.067 0.933 41 H 0.097 0.903 42 H 0.115 0.885 43 H 0.117 0.883 44 H 0.106 0.894 45 H 0.092 0.908 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.030 14.055 -0.960 14.410 hybrid contribution -0.327 -0.254 -1.119 1.193 sum -3.357 13.801 -2.079 14.355 Atomic orbital electron populations 1.21759 0.94152 1.01217 1.02708 1.21782 0.96708 0.97008 1.00113 1.21686 0.92335 0.95244 0.99782 0.89131 1.22411 0.99194 0.98185 0.95009 1.22471 0.92487 0.97946 1.01765 1.22340 0.99508 0.98103 0.95216 1.23080 0.97068 0.93012 1.03270 0.83887 1.21096 0.78677 0.90978 0.83469 1.90417 1.61200 1.56987 1.42386 1.43994 1.44533 1.11913 1.18293 1.20157 1.41713 0.95459 0.97881 0.93825 1.27672 1.00530 1.02514 0.92344 1.70812 1.14568 1.30731 1.36912 0.82860 0.73436 0.72685 0.76925 1.20694 1.19824 1.19195 1.21867 0.96434 0.90022 0.89596 1.23275 0.96927 0.98104 1.01155 1.22492 1.00140 0.92995 0.99324 1.22616 0.97621 0.96475 0.99588 1.22686 0.99177 0.94829 1.00787 0.90814 0.94063 0.91739 0.92870 0.97145 0.88806 0.93283 0.88608 0.90394 0.90347 0.94706 0.92107 0.91950 0.89970 0.93334 0.90343 0.88529 0.88326 0.89424 0.90844 0.93032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.29 9.77 71.98 0.70 -3.58 16 2 C -0.12 -4.73 3.84 30.59 0.12 -4.62 16 3 C -0.07 -2.30 2.02 -10.07 -0.02 -2.32 16 4 H 0.09 2.47 7.68 -2.39 -0.02 2.45 16 5 C -0.11 -2.83 5.53 31.67 0.18 -2.66 16 6 C -0.11 -2.48 6.91 31.89 0.22 -2.26 16 7 C -0.11 -3.58 5.99 31.67 0.19 -3.39 16 8 C -0.14 -5.21 1.18 -10.82 -0.01 -5.23 16 9 H 0.14 4.56 0.86 -2.39 0.00 4.56 16 10 C 0.47 23.57 4.03 87.66 0.35 23.92 16 11 O -0.62 -37.08 13.70 -3.08 -0.04 -37.12 16 12 N -0.47 -24.82 2.21 -609.38 -1.35 -26.17 16 13 C -0.42 -25.65 8.82 84.04 0.74 -24.91 16 14 H 0.04 2.87 7.84 -2.91 -0.02 2.85 16 15 C -0.03 -1.60 4.66 84.93 0.40 -1.20 16 16 N -0.90 -52.56 12.60 21.66 0.27 -52.28 16 17 Si 1.12 50.84 29.98 68.60 2.06 52.90 16 18 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 19 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 20 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 21 C 0.13 5.47 2.17 45.72 0.10 5.57 16 22 C -0.16 -5.74 5.25 31.67 0.17 -5.58 16 23 C -0.11 -2.78 6.72 31.88 0.21 -2.57 16 24 C -0.13 -3.01 6.12 31.67 0.19 -2.82 16 25 C -0.14 -4.65 5.75 31.32 0.18 -4.47 16 26 H 0.07 1.87 7.51 -2.39 -0.02 1.86 16 27 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.05 2.53 5.99 -2.39 -0.01 2.51 16 30 H 0.01 0.48 6.95 -2.38 -0.02 0.46 16 31 H 0.09 1.79 8.14 -2.39 -0.02 1.78 16 32 H 0.05 1.44 7.76 -2.39 -0.02 1.42 16 33 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 35 H 0.08 2.14 7.61 -2.39 -0.02 2.12 16 36 H 0.03 1.34 7.57 -2.38 -0.02 1.32 16 37 H 0.27 15.81 5.86 -92.71 -0.54 15.26 16 38 H 0.06 3.12 6.33 -2.39 -0.02 3.10 16 39 H 0.08 3.09 3.24 -2.39 -0.01 3.08 16 40 H 0.05 1.94 7.38 -2.39 -0.02 1.92 16 41 H 0.08 1.82 8.14 -2.39 -0.02 1.81 16 42 H 0.10 1.85 8.14 -2.39 -0.02 1.84 16 43 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.09 1.95 5.32 -2.39 -0.01 1.94 16 45 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 46 H 0.05 1.92 7.27 -2.38 -0.02 1.90 16 Total: -1.00 -75.85 327.04 5.84 -70.01 By element: Atomic # 1 Polarization: 27.60 SS G_CDS: 1.19 Total: 28.78 kcal Atomic # 6 Polarization: -39.82 SS G_CDS: 3.72 Total: -36.11 kcal Atomic # 7 Polarization: -77.38 SS G_CDS: -1.07 Total: -78.46 kcal Atomic # 8 Polarization: -37.08 SS G_CDS: -0.04 Total: -37.12 kcal Atomic # 14 Polarization: 50.84 SS G_CDS: 2.06 Total: 52.90 kcal Total: -75.85 5.84 -70.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449950236.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.166 kcal (2) G-P(sol) polarization free energy of solvation -75.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds