Wall clock time and date at job start Tue Mar 31 2020 02:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47117 * 2 1 4 4 H 1.09003 * 110.81889 * 51.65575 * 3 2 1 5 5 C 1.54895 * 110.75276 * 288.32764 * 3 2 1 6 6 C 1.54264 * 104.19319 * 203.74419 * 5 3 2 7 7 C 1.53879 * 106.60236 * 23.60934 * 6 5 3 8 8 C 1.54265 * 106.59565 * 359.97438 * 7 6 5 9 9 H 1.09002 * 110.48536 * 95.20178 * 8 7 6 10 10 C 1.50703 * 110.49058 * 217.71286 * 8 7 6 11 11 O 1.21292 * 120.00089 * 105.75756 * 10 8 7 12 12 N 1.34771 * 119.99736 * 285.76478 * 10 8 7 13 13 C 1.37103 * 120.00530 * 3.25214 * 12 10 8 14 14 H 1.07993 * 120.00025 * 123.75454 * 13 12 10 15 15 C 1.38954 * 119.99725 * 303.75988 * 13 12 10 16 16 N 1.31407 * 120.00113 * 157.46877 * 15 13 12 17 17 Si 1.86800 * 119.99838 * 337.47474 * 15 13 12 18 18 H 1.48501 * 109.47483 * 94.75034 * 17 15 13 19 19 H 1.48505 * 109.47126 * 214.74875 * 17 15 13 20 20 H 1.48501 * 109.47357 * 334.74808 * 17 15 13 21 21 C 1.46498 * 119.99872 * 183.25214 * 12 10 8 22 22 C 1.54264 * 110.07285 * 128.65405 * 21 12 10 23 23 C 1.54890 * 104.20156 * 95.69815 * 22 21 12 24 24 C 1.54894 * 102.74468 * 37.94058 * 23 22 21 25 25 C 1.53878 * 110.03679 * 245.84384 * 21 12 10 26 26 H 1.09001 * 109.47541 * 300.00299 * 1 2 3 27 27 H 1.08997 * 109.46847 * 60.00359 * 1 2 3 28 28 H 1.08996 * 109.47161 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47266 * 239.99335 * 2 1 3 30 30 H 1.09005 * 109.47090 * 119.99559 * 2 1 3 31 31 H 1.08995 * 110.48710 * 85.06533 * 5 3 2 32 32 H 1.09002 * 110.48304 * 322.41611 * 5 3 2 33 33 H 1.08998 * 110.03435 * 264.32085 * 6 5 3 34 34 H 1.09008 * 110.03171 * 142.89070 * 6 5 3 35 35 H 1.08995 * 110.02955 * 240.71967 * 7 6 5 36 36 H 1.08992 * 110.07573 * 119.30447 * 7 6 5 37 37 H 0.96998 * 120.00313 * 179.97438 * 16 15 13 38 38 H 1.09002 * 110.01964 * 7.23414 * 21 12 10 39 39 H 1.09009 * 110.48814 * 214.37431 * 22 21 12 40 40 H 1.09003 * 110.49155 * 337.01492 * 22 21 12 41 41 H 1.08999 * 110.75437 * 279.63339 * 23 22 21 42 42 H 1.08992 * 110.76032 * 156.25481 * 23 22 21 43 43 H 1.08997 * 110.48314 * 203.38373 * 24 23 22 44 44 H 1.09003 * 110.48728 * 80.74192 * 24 23 22 45 45 H 1.09000 * 110.02437 * 359.94907 * 25 21 12 46 46 H 1.08993 * 110.03651 * 121.38019 * 25 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5732 2.0185 0.7991 5 6 1.7936 2.1118 -1.3750 6 6 2.8429 3.2408 -1.4396 7 6 3.9809 2.8385 -0.4852 8 6 3.5831 1.4794 0.1267 9 1 4.0331 0.6614 -0.4359 10 6 3.9956 1.4117 1.5746 11 8 3.1597 1.5055 2.4484 12 7 5.2935 1.2471 1.8984 13 6 6.2463 1.2080 0.9133 14 1 7.0758 1.8991 0.9367 15 6 6.1445 0.2793 -0.1153 16 7 6.7531 0.4967 -1.2595 17 14 5.1423 -1.2781 0.1284 18 1 3.7680 -1.0693 -0.3941 19 1 5.7847 -2.3997 -0.6028 20 1 5.0773 -1.6036 1.5758 21 6 5.6862 1.1098 3.3030 22 6 6.5708 -0.1408 3.4857 23 6 8.0189 0.4046 3.4162 24 6 7.9104 1.7581 4.1614 25 6 6.5379 2.3171 3.7328 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 0.7859 2.5243 -1.4233 32 1 1.9530 1.3962 -2.1816 33 1 2.3990 4.1821 -1.1157 34 1 3.2248 3.3378 -2.4560 35 1 4.0891 3.5846 0.3020 36 1 4.9153 2.7405 -1.0375 37 1 6.6823 -0.1517 -1.9774 38 1 4.7997 1.0352 3.9328 39 1 6.3833 -0.6025 4.4552 40 1 6.3930 -0.8547 2.6814 41 1 8.3249 0.5570 2.3812 42 1 8.7089 -0.2649 3.9296 43 1 8.7101 2.4301 3.8502 44 1 7.9391 1.6031 5.2400 45 1 6.6598 3.0048 2.8958 46 1 6.0648 2.8285 4.5709 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449950237.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:46:18 Heat of formation + Delta-G solvation = -56.413329 kcal Electronic energy + Delta-G solvation = -24329.207645 eV Core-core repulsion = 21217.664654 eV Total energy + Delta-G solvation = -3111.542991 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.68724 -37.81756 -36.13779 -34.06996 -32.62730 -31.73401 -28.88601 -28.03248 -27.09764 -26.88443 -24.43520 -22.55690 -21.16443 -20.00418 -19.50891 -19.25795 -18.70700 -17.14306 -15.79301 -15.41757 -14.81331 -14.49226 -14.36805 -14.10272 -13.95639 -13.62813 -13.30874 -12.84481 -12.70214 -12.53258 -12.24450 -12.06439 -11.62739 -11.39015 -11.14992 -11.07303 -10.86790 -10.72091 -10.60692 -10.50421 -10.48761 -10.39292 -10.03595 -9.94037 -9.90168 -9.83418 -9.80502 -9.74213 -9.24061 -8.83511 -8.44922 -7.44214 -6.45800 -4.18366 3.11284 3.24157 3.30433 3.79467 4.14495 4.48045 4.89425 5.12330 5.23060 5.30241 5.35428 5.38816 5.57394 5.60670 5.66781 5.77135 6.06583 6.08663 6.11940 6.16705 6.21929 6.22810 6.24715 6.26408 6.27590 6.30519 6.35339 6.36772 6.47849 6.48776 6.54060 6.56871 6.62000 6.65525 6.69355 6.76261 6.92982 6.96276 7.03643 7.10849 7.15751 7.22370 7.74995 7.91389 8.52621 9.04535 9.36710 9.81515 10.63284 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.018465 B = 0.007630 C = 0.007261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.996442 B = 3668.626067 C = 3855.334116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.115 4.115 3 C -0.078 4.078 4 H 0.084 0.916 5 C -0.117 4.117 6 C -0.123 4.123 7 C -0.094 4.094 8 C -0.100 4.100 9 H 0.102 0.898 10 C 0.500 3.500 11 O -0.595 6.595 12 N -0.465 5.465 13 C -0.334 4.334 14 H 0.096 0.904 15 C 0.083 3.917 16 N -0.856 5.856 17 Si 0.830 3.170 18 H -0.250 1.250 19 H -0.289 1.289 20 H -0.256 1.256 21 C 0.128 3.872 22 C -0.127 4.127 23 C -0.117 4.117 24 C -0.118 4.118 25 C -0.125 4.125 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.046 0.954 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.053 0.947 36 H 0.087 0.913 37 H 0.273 0.727 38 H 0.077 0.923 39 H 0.053 0.947 40 H 0.075 0.925 41 H 0.084 0.916 42 H 0.049 0.951 43 H 0.057 0.943 44 H 0.053 0.947 45 H 0.072 0.928 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.855 0.797 1.712 4.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.153 4.153 3 C -0.096 4.096 4 H 0.103 0.897 5 C -0.155 4.155 6 C -0.161 4.161 7 C -0.133 4.133 8 C -0.121 4.121 9 H 0.120 0.880 10 C 0.290 3.710 11 O -0.480 6.480 12 N -0.186 5.186 13 C -0.462 4.462 14 H 0.113 0.887 15 C -0.125 4.125 16 N -0.491 5.491 17 Si 0.656 3.344 18 H -0.175 1.175 19 H -0.215 1.215 20 H -0.181 1.181 21 C 0.024 3.976 22 C -0.165 4.165 23 C -0.155 4.155 24 C -0.156 4.156 25 C -0.163 4.163 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.106 0.894 37 H 0.084 0.916 38 H 0.095 0.905 39 H 0.071 0.929 40 H 0.093 0.907 41 H 0.103 0.897 42 H 0.068 0.932 43 H 0.076 0.924 44 H 0.072 0.928 45 H 0.091 0.909 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.181 0.798 1.963 4.687 hybrid contribution -0.188 -1.043 -0.015 1.060 sum -4.369 -0.245 1.948 4.790 Atomic orbital electron populations 1.21752 0.96402 1.00719 1.01472 1.21578 0.95140 0.96952 1.01581 1.22050 0.94893 0.95622 0.97081 0.89731 1.22405 0.98156 0.97608 0.97311 1.22150 0.96445 0.97835 0.99665 1.21819 0.98836 0.94735 0.97862 1.22195 0.94772 1.00845 0.94271 0.88024 1.20707 0.82782 0.76948 0.90578 1.90498 1.51818 1.54697 1.50962 1.43778 1.05415 1.64646 1.04758 1.18694 1.07812 1.18454 1.01208 0.88694 1.25527 0.95143 0.96884 0.94911 1.69749 1.41957 1.35080 1.02265 0.87899 0.81756 0.84588 0.80143 1.17529 1.21505 1.18086 1.21634 0.96693 0.93608 0.85619 1.22633 0.95415 0.98014 1.00469 1.22476 0.96137 0.95305 1.01550 1.22273 0.97122 0.97391 0.98771 1.22421 0.95108 0.98382 1.00396 0.92828 0.93002 0.93528 0.92344 0.92303 0.92349 0.92063 0.92626 0.92248 0.92767 0.89420 0.91640 0.90456 0.92865 0.90676 0.89716 0.93243 0.92437 0.92849 0.90910 0.92934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.81 37.16 0.36 -1.78 16 2 C -0.12 -2.09 4.35 -26.73 -0.12 -2.21 16 3 C -0.08 -1.48 2.00 -88.64 -0.18 -1.66 16 4 H 0.08 1.71 7.33 -51.93 -0.38 1.33 16 5 C -0.12 -1.90 5.70 -25.07 -0.14 -2.05 16 6 C -0.12 -2.05 6.80 -25.61 -0.17 -2.22 16 7 C -0.09 -1.91 5.69 -25.61 -0.15 -2.05 16 8 C -0.10 -2.17 1.29 -90.12 -0.12 -2.28 16 9 H 0.10 2.35 2.77 -51.93 -0.14 2.20 16 10 C 0.50 11.91 5.56 -10.99 -0.06 11.85 16 11 O -0.60 -15.16 15.05 5.55 0.08 -15.07 16 12 N -0.46 -10.81 1.70 -106.54 -0.18 -10.99 16 13 C -0.33 -8.12 5.82 -14.93 -0.09 -8.21 16 14 H 0.10 2.49 7.69 -52.49 -0.40 2.09 16 15 C 0.08 2.05 4.06 -17.47 -0.07 1.98 16 16 N -0.86 -22.08 13.96 55.50 0.77 -21.31 16 17 Si 0.83 19.32 24.02 -169.99 -4.08 15.23 16 18 H -0.25 -5.55 4.04 56.52 0.23 -5.32 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.26 -6.12 5.69 56.52 0.32 -5.80 16 21 C 0.13 2.70 3.32 -66.81 -0.22 2.48 16 22 C -0.13 -2.48 6.03 -25.07 -0.15 -2.63 16 23 C -0.12 -2.06 6.57 -24.73 -0.16 -2.22 16 24 C -0.12 -1.90 6.83 -25.07 -0.17 -2.07 16 25 C -0.12 -2.30 6.33 -25.61 -0.16 -2.46 16 26 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.05 0.68 7.65 -51.93 -0.40 0.29 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.06 1.06 7.05 -51.93 -0.37 0.69 16 30 H 0.06 1.19 8.13 -51.93 -0.42 0.77 16 31 H 0.06 0.83 8.09 -51.93 -0.42 0.41 16 32 H 0.06 0.97 7.93 -51.93 -0.41 0.56 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.06 0.92 8.14 -51.92 -0.42 0.50 16 35 H 0.05 1.11 7.83 -51.93 -0.41 0.71 16 36 H 0.09 1.93 7.95 -51.93 -0.41 1.52 16 37 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 38 H 0.08 1.70 7.00 -51.93 -0.36 1.34 16 39 H 0.05 0.92 8.14 -51.92 -0.42 0.50 16 40 H 0.07 1.64 4.92 -51.93 -0.26 1.38 16 41 H 0.08 1.68 7.12 -51.93 -0.37 1.31 16 42 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.07 1.45 7.37 -51.93 -0.38 1.07 16 46 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 332.12 15.07 5.01 5.01 Total: -1.00 -26.24 332.12 -8.33 -34.57 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -8.33 Total: 8.11 kcal Atomic # 6 Polarization: -13.95 SS G_CDS: -1.60 Total: -15.54 kcal Atomic # 7 Polarization: -32.89 SS G_CDS: 0.59 Total: -32.30 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: 0.08 Total: -15.07 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -4.08 Total: 15.23 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -26.24 -8.33 -34.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449950237.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.846 kcal (2) G-P(sol) polarization free energy of solvation -26.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds