Wall clock time and date at job start Tue Mar 31 2020 02:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47117 * 2 1 4 4 H 1.09003 * 110.81889 * 51.65575 * 3 2 1 5 5 C 1.54895 * 110.75276 * 288.32764 * 3 2 1 6 6 C 1.54264 * 104.19319 * 203.74419 * 5 3 2 7 7 C 1.53879 * 106.60236 * 23.60934 * 6 5 3 8 8 C 1.54265 * 106.59565 * 359.97438 * 7 6 5 9 9 H 1.09002 * 110.48536 * 95.20178 * 8 7 6 10 10 C 1.50703 * 110.49058 * 217.71286 * 8 7 6 11 11 O 1.21292 * 120.00089 * 105.75756 * 10 8 7 12 12 N 1.34771 * 119.99736 * 285.76478 * 10 8 7 13 13 C 1.37103 * 120.00530 * 3.25214 * 12 10 8 14 14 H 1.07993 * 120.00025 * 123.75454 * 13 12 10 15 15 C 1.38954 * 119.99725 * 303.75988 * 13 12 10 16 16 N 1.31407 * 120.00113 * 157.46877 * 15 13 12 17 17 Si 1.86800 * 119.99838 * 337.47474 * 15 13 12 18 18 H 1.48501 * 109.47483 * 94.75034 * 17 15 13 19 19 H 1.48505 * 109.47126 * 214.74875 * 17 15 13 20 20 H 1.48501 * 109.47357 * 334.74808 * 17 15 13 21 21 C 1.46498 * 119.99872 * 183.25214 * 12 10 8 22 22 C 1.54264 * 110.07285 * 128.65405 * 21 12 10 23 23 C 1.54890 * 104.20156 * 95.69815 * 22 21 12 24 24 C 1.54894 * 102.74468 * 37.94058 * 23 22 21 25 25 C 1.53878 * 110.03679 * 245.84384 * 21 12 10 26 26 H 1.09001 * 109.47541 * 300.00299 * 1 2 3 27 27 H 1.08997 * 109.46847 * 60.00359 * 1 2 3 28 28 H 1.08996 * 109.47161 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47266 * 239.99335 * 2 1 3 30 30 H 1.09005 * 109.47090 * 119.99559 * 2 1 3 31 31 H 1.08995 * 110.48710 * 85.06533 * 5 3 2 32 32 H 1.09002 * 110.48304 * 322.41611 * 5 3 2 33 33 H 1.08998 * 110.03435 * 264.32085 * 6 5 3 34 34 H 1.09008 * 110.03171 * 142.89070 * 6 5 3 35 35 H 1.08995 * 110.02955 * 240.71967 * 7 6 5 36 36 H 1.08992 * 110.07573 * 119.30447 * 7 6 5 37 37 H 0.96998 * 120.00313 * 179.97438 * 16 15 13 38 38 H 1.09002 * 110.01964 * 7.23414 * 21 12 10 39 39 H 1.09009 * 110.48814 * 214.37431 * 22 21 12 40 40 H 1.09003 * 110.49155 * 337.01492 * 22 21 12 41 41 H 1.08999 * 110.75437 * 279.63339 * 23 22 21 42 42 H 1.08992 * 110.76032 * 156.25481 * 23 22 21 43 43 H 1.08997 * 110.48314 * 203.38373 * 24 23 22 44 44 H 1.09003 * 110.48728 * 80.74192 * 24 23 22 45 45 H 1.09000 * 110.02437 * 359.94907 * 25 21 12 46 46 H 1.08993 * 110.03651 * 121.38019 * 25 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5732 2.0185 0.7991 5 6 1.7936 2.1118 -1.3750 6 6 2.8429 3.2408 -1.4396 7 6 3.9809 2.8385 -0.4852 8 6 3.5831 1.4794 0.1267 9 1 4.0331 0.6614 -0.4359 10 6 3.9956 1.4117 1.5746 11 8 3.1597 1.5055 2.4484 12 7 5.2935 1.2471 1.8984 13 6 6.2463 1.2080 0.9133 14 1 7.0758 1.8991 0.9367 15 6 6.1445 0.2793 -0.1153 16 7 6.7531 0.4967 -1.2595 17 14 5.1423 -1.2781 0.1284 18 1 3.7680 -1.0693 -0.3941 19 1 5.7847 -2.3997 -0.6028 20 1 5.0773 -1.6036 1.5758 21 6 5.6862 1.1098 3.3030 22 6 6.5708 -0.1408 3.4857 23 6 8.0189 0.4046 3.4162 24 6 7.9104 1.7581 4.1614 25 6 6.5379 2.3171 3.7328 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 0.7859 2.5243 -1.4233 32 1 1.9530 1.3962 -2.1816 33 1 2.3990 4.1821 -1.1157 34 1 3.2248 3.3378 -2.4560 35 1 4.0891 3.5846 0.3020 36 1 4.9153 2.7405 -1.0375 37 1 6.6823 -0.1517 -1.9774 38 1 4.7997 1.0352 3.9328 39 1 6.3833 -0.6025 4.4552 40 1 6.3930 -0.8547 2.6814 41 1 8.3249 0.5570 2.3812 42 1 8.7089 -0.2649 3.9296 43 1 8.7101 2.4301 3.8502 44 1 7.9391 1.6031 5.2400 45 1 6.6598 3.0048 2.8958 46 1 6.0648 2.8285 4.5709 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449950237.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:46:17 Heat of formation + Delta-G solvation = -68.814744 kcal Electronic energy + Delta-G solvation = -24329.745411 eV Core-core repulsion = 21217.664654 eV Total energy + Delta-G solvation = -3112.080757 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.45031 -39.36174 -37.82101 -35.90845 -34.02406 -33.64790 -30.45007 -29.54257 -28.58330 -28.40236 -26.34257 -23.99886 -22.75520 -21.44717 -20.99402 -20.94966 -20.46054 -18.94955 -17.53492 -17.18861 -16.42626 -16.13235 -15.98740 -15.69085 -15.49749 -15.29319 -14.91455 -14.47939 -14.27012 -14.02710 -13.80022 -13.76750 -13.13120 -13.00741 -12.81423 -12.72560 -12.45149 -12.26698 -12.10419 -12.08768 -11.90793 -11.89112 -11.65953 -11.54094 -11.40650 -11.30832 -11.26894 -11.24267 -10.97609 -10.73014 -10.33363 -9.34123 -8.44821 -6.17373 1.21405 1.30755 1.37628 1.90467 2.20262 2.71709 2.94821 3.64988 3.77309 3.79630 3.88693 3.90933 4.15700 4.23037 4.33411 4.40841 4.53816 4.59635 4.64662 4.70384 4.71645 4.74386 4.74967 4.80962 4.82248 4.89067 4.90991 4.98557 5.01728 5.09462 5.13518 5.16353 5.19953 5.23438 5.25326 5.36803 5.39737 5.42135 5.43988 5.57182 5.62531 5.64604 5.81694 6.02264 6.52609 7.07077 7.44917 7.90502 8.67340 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.018465 B = 0.007630 C = 0.007261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.996442 B = 3668.626067 C = 3855.334116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.116 4.116 3 C -0.077 4.077 4 H 0.071 0.929 5 C -0.108 4.108 6 C -0.117 4.117 7 C -0.091 4.091 8 C -0.106 4.106 9 H 0.087 0.913 10 C 0.489 3.511 11 O -0.617 6.617 12 N -0.469 5.469 13 C -0.319 4.319 14 H 0.072 0.928 15 C 0.066 3.934 16 N -0.881 5.881 17 Si 0.861 3.139 18 H -0.236 1.236 19 H -0.290 1.290 20 H -0.268 1.268 21 C 0.116 3.884 22 C -0.127 4.127 23 C -0.113 4.113 24 C -0.107 4.107 25 C -0.121 4.121 26 H 0.051 0.949 27 H 0.073 0.927 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.028 0.972 31 H 0.089 0.911 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.040 0.960 36 H 0.062 0.938 37 H 0.276 0.724 38 H 0.064 0.936 39 H 0.078 0.922 40 H 0.047 0.953 41 H 0.054 0.946 42 H 0.078 0.922 43 H 0.068 0.932 44 H 0.083 0.917 45 H 0.049 0.951 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.856 0.893 1.845 5.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.154 4.154 3 C -0.096 4.096 4 H 0.090 0.910 5 C -0.146 4.146 6 C -0.155 4.155 7 C -0.129 4.129 8 C -0.127 4.127 9 H 0.105 0.895 10 C 0.280 3.720 11 O -0.503 6.503 12 N -0.190 5.190 13 C -0.447 4.447 14 H 0.089 0.911 15 C -0.140 4.140 16 N -0.517 5.517 17 Si 0.687 3.313 18 H -0.161 1.161 19 H -0.216 1.216 20 H -0.193 1.193 21 C 0.012 3.988 22 C -0.165 4.165 23 C -0.150 4.150 24 C -0.144 4.144 25 C -0.159 4.159 26 H 0.070 0.930 27 H 0.092 0.908 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.047 0.953 31 H 0.107 0.893 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.059 0.941 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.097 0.903 40 H 0.066 0.934 41 H 0.073 0.927 42 H 0.096 0.904 43 H 0.087 0.913 44 H 0.101 0.899 45 H 0.068 0.932 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.175 0.894 2.096 5.654 hybrid contribution 0.170 -1.045 0.015 1.058 sum -5.005 -0.151 2.111 5.434 Atomic orbital electron populations 1.21698 0.93409 1.02070 1.02434 1.21569 0.97821 0.95929 1.00037 1.22053 0.92535 0.96423 0.98551 0.91027 1.22394 0.99604 0.97236 0.95348 1.22135 0.95169 0.98869 0.99319 1.21747 0.99387 0.93810 0.97946 1.22264 0.96981 1.00939 0.92528 0.89476 1.21191 0.82736 0.76543 0.91535 1.90466 1.52241 1.55802 1.51801 1.43895 1.05215 1.64256 1.05624 1.18347 1.07068 1.17714 1.01568 0.91080 1.25721 0.95642 0.98002 0.94612 1.69790 1.43324 1.35790 1.02801 0.87425 0.81902 0.82729 0.79264 1.16052 1.21619 1.19334 1.21882 0.96973 0.95825 0.84075 1.22642 0.96390 0.96740 1.00753 1.22406 0.95306 0.96810 1.00503 1.22243 0.95633 0.96292 1.00267 1.22370 0.96459 0.96980 1.00096 0.93000 0.90849 0.92077 0.92389 0.95309 0.89271 0.91435 0.90722 0.90863 0.94066 0.91952 0.91348 0.91763 0.90347 0.93392 0.92676 0.90364 0.91342 0.89887 0.93185 0.91316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.74 9.81 71.98 0.71 -3.03 16 2 C -0.12 -4.09 4.35 30.60 0.13 -3.96 16 3 C -0.08 -2.85 2.00 -9.51 -0.02 -2.87 16 4 H 0.07 2.85 7.33 -2.39 -0.02 2.83 16 5 C -0.11 -3.22 5.70 31.67 0.18 -3.04 16 6 C -0.12 -3.67 6.80 31.32 0.21 -3.46 16 7 C -0.09 -3.69 5.69 31.32 0.18 -3.51 16 8 C -0.11 -4.65 1.29 -10.47 -0.01 -4.66 16 9 H 0.09 4.07 2.77 -2.39 -0.01 4.06 16 10 C 0.49 23.87 5.56 87.66 0.49 24.36 16 11 O -0.62 -32.12 15.05 -3.07 -0.05 -32.16 16 12 N -0.47 -22.45 1.70 -609.38 -1.03 -23.48 16 13 C -0.32 -16.04 5.82 84.04 0.49 -15.56 16 14 H 0.07 3.91 7.69 -2.91 -0.02 3.89 16 15 C 0.07 3.34 4.06 84.93 0.34 3.69 16 16 N -0.88 -46.41 13.96 21.66 0.30 -46.11 16 17 Si 0.86 40.36 24.02 68.60 1.65 42.00 16 18 H -0.24 -10.44 4.04 99.48 0.40 -10.03 16 19 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 20 H -0.27 -13.04 5.69 99.48 0.57 -12.47 16 21 C 0.12 4.93 3.32 45.72 0.15 5.08 16 22 C -0.13 -4.91 6.03 31.67 0.19 -4.72 16 23 C -0.11 -3.84 6.57 31.89 0.21 -3.63 16 24 C -0.11 -3.22 6.83 31.67 0.22 -3.00 16 25 C -0.12 -4.40 6.33 31.32 0.20 -4.20 16 26 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.07 1.66 7.65 -2.39 -0.02 1.64 16 28 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.06 2.02 7.05 -2.39 -0.02 2.00 16 30 H 0.03 1.16 8.13 -2.38 -0.02 1.14 16 31 H 0.09 2.14 8.09 -2.39 -0.02 2.12 16 32 H 0.07 1.94 7.93 -2.39 -0.02 1.92 16 33 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 35 H 0.04 1.73 7.83 -2.39 -0.02 1.71 16 36 H 0.06 2.82 7.95 -2.39 -0.02 2.80 16 37 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 38 H 0.06 2.87 7.00 -2.39 -0.02 2.86 16 39 H 0.08 2.60 8.14 -2.38 -0.02 2.58 16 40 H 0.05 2.11 4.92 -2.39 -0.01 2.10 16 41 H 0.05 2.20 7.12 -2.39 -0.02 2.18 16 42 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 43 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 44 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 45 H 0.05 2.03 7.37 -2.39 -0.02 2.02 16 46 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -58.37 332.12 5.02 -53.34 By element: Atomic # 1 Polarization: 28.42 SS G_CDS: 0.49 Total: 28.91 kcal Atomic # 6 Polarization: -26.17 SS G_CDS: 3.67 Total: -22.50 kcal Atomic # 7 Polarization: -68.86 SS G_CDS: -0.73 Total: -69.59 kcal Atomic # 8 Polarization: -32.12 SS G_CDS: -0.05 Total: -32.16 kcal Atomic # 14 Polarization: 40.36 SS G_CDS: 1.65 Total: 42.00 kcal Total: -58.37 5.02 -53.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449950237.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.473 kcal (2) G-P(sol) polarization free energy of solvation -58.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds