Wall clock time and date at job start Tue Mar 31 2020 02:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50698 * 120.00309 * 2 1 4 4 C 1.53002 * 109.47161 * 124.99808 * 3 2 1 5 5 C 1.50702 * 109.47309 * 299.99813 * 4 3 2 6 6 O 1.21278 * 120.00187 * 240.00416 * 5 4 3 7 7 N 1.34781 * 119.99490 * 60.00029 * 5 4 3 8 8 C 1.46503 * 119.99578 * 180.02562 * 7 5 4 9 9 H 1.08998 * 109.47530 * 34.99810 * 8 7 5 10 10 C 1.50699 * 109.47126 * 155.00195 * 8 7 5 11 11 H 1.07996 * 120.00002 * 35.00430 * 10 8 7 12 12 C 1.37879 * 119.99728 * 215.00674 * 10 8 7 13 13 N 1.31521 * 119.99438 * 184.85980 * 12 10 8 14 14 Si 1.86796 * 120.00122 * 4.85748 * 12 10 8 15 15 H 1.48501 * 109.46969 * 84.81823 * 14 12 10 16 16 H 1.48502 * 109.47115 * 204.81475 * 14 12 10 17 17 H 1.48493 * 109.47444 * 324.81672 * 14 12 10 18 18 C 1.52996 * 109.46856 * 275.00006 * 8 7 5 19 19 C 1.53000 * 109.47516 * 66.40967 * 18 8 7 20 20 C 1.53004 * 109.46950 * 180.02562 * 4 3 2 21 21 C 1.53002 * 109.46950 * 179.97438 * 20 4 3 22 22 C 1.52999 * 109.47221 * 59.99942 * 21 20 4 23 23 C 1.53004 * 109.47206 * 299.99902 * 22 21 20 24 24 C 1.52999 * 109.47221 * 60.00107 * 4 3 2 25 25 H 1.08001 * 120.00292 * 179.97438 * 1 2 3 26 26 H 1.08000 * 119.99651 * 0.02562 * 1 2 3 27 27 H 1.08003 * 119.99761 * 179.97438 * 2 1 3 28 28 H 1.08993 * 109.47107 * 4.99777 * 3 2 1 29 29 H 1.09000 * 109.47292 * 244.99766 * 3 2 1 30 30 H 0.96997 * 120.00422 * 0.02562 * 7 5 4 31 31 H 0.96999 * 119.99484 * 179.97438 * 13 12 10 32 32 H 1.09007 * 109.47381 * 186.41482 * 18 8 7 33 33 H 1.09004 * 109.47701 * 306.40797 * 18 8 7 34 34 H 1.08997 * 109.46915 * 300.00162 * 19 18 8 35 35 H 1.09007 * 109.46978 * 60.00009 * 19 18 8 36 36 H 1.08999 * 109.47412 * 179.97438 * 19 18 8 37 37 H 1.08993 * 109.47347 * 59.99951 * 20 4 3 38 38 H 1.09001 * 109.46817 * 299.99520 * 20 4 3 39 39 H 1.09000 * 109.46984 * 299.99982 * 21 20 4 40 40 H 1.09000 * 109.47257 * 179.97438 * 21 20 4 41 41 H 1.09001 * 109.47569 * 59.99853 * 22 21 20 42 42 H 1.08998 * 109.46927 * 180.02562 * 22 21 20 43 43 H 1.08993 * 109.47347 * 179.97438 * 23 22 21 44 44 H 1.09001 * 109.46817 * 300.00412 * 23 22 21 45 45 H 1.09005 * 109.46756 * 299.99701 * 24 4 3 46 46 H 1.09000 * 109.47108 * 60.00117 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0350 1.3330 1.1817 5 6 2.2638 1.1983 2.4694 6 8 2.3205 2.0757 3.3048 7 7 1.5111 0.1028 2.6925 8 6 0.7609 -0.0279 3.9441 9 1 0.4064 0.9534 4.2595 10 6 -0.4172 -0.9430 3.7304 11 1 -0.3327 -1.7842 3.0585 12 6 -1.6031 -0.7061 4.3928 13 7 -2.5998 -1.5568 4.2812 14 14 -1.7939 0.8231 5.4485 15 1 -2.2032 1.9666 4.5940 16 1 -2.8307 0.5832 6.4843 17 1 -0.4998 1.1351 6.1065 18 6 1.6714 -0.6129 5.0256 19 6 2.7795 0.3890 5.3563 20 6 3.7996 2.6583 1.1820 21 6 4.7707 2.6865 2.3640 22 6 5.7606 1.5266 2.2387 23 6 4.9960 0.2013 2.2384 24 6 4.0245 0.1728 1.0560 25 1 -0.5401 -0.9353 -0.0004 26 1 -0.5399 0.9353 -0.0004 27 1 1.8499 -0.9354 0.0004 28 1 1.3587 2.1316 0.0895 29 1 2.6214 1.4025 -0.9313 30 1 1.4660 -0.5991 2.0245 31 1 -3.4340 -1.3904 4.7474 32 1 1.0861 -0.8164 5.9224 33 1 2.1161 -1.5401 4.6640 34 1 3.3648 0.5924 4.4596 35 1 2.3349 1.3162 5.7181 36 1 3.4279 -0.0276 6.1271 37 1 3.0945 3.4846 1.2717 38 1 4.3575 2.7561 0.2506 39 1 4.2125 2.5888 3.2952 40 1 5.3158 3.6304 2.3640 41 1 6.3188 1.6242 1.3075 42 1 6.4521 1.5465 3.0810 43 1 5.7011 -0.6249 2.1486 44 1 4.4378 0.1037 3.1695 45 1 3.4794 -0.7712 1.0561 46 1 4.5823 0.2703 0.1247 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000450618207.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:51 Heat of formation + Delta-G solvation = -47.231604 kcal Electronic energy + Delta-G solvation = -24372.673258 eV Core-core repulsion = 21261.528416 eV Total energy + Delta-G solvation = -3111.144842 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.56071 -37.12758 -35.29911 -34.73697 -32.26397 -31.37353 -30.90595 -30.36317 -27.42854 -25.88766 -23.25342 -22.69513 -22.32106 -20.66428 -19.76550 -19.19693 -18.99066 -16.85898 -16.02263 -15.58648 -15.26793 -14.73530 -14.54443 -13.96850 -13.94316 -13.57206 -13.40698 -13.18049 -12.76692 -12.75108 -12.14300 -12.02941 -11.92874 -11.82628 -11.71910 -11.61193 -11.26151 -10.96344 -10.89639 -10.85824 -10.68766 -10.60916 -10.33861 -9.96509 -9.86032 -9.81833 -9.75722 -9.17652 -8.94085 -8.66390 -8.61098 -7.81671 -6.20456 -4.22497 2.61513 3.27547 3.35429 3.43585 3.45785 4.13094 4.35274 4.73515 4.89231 4.94078 5.16099 5.20785 5.26726 5.38778 5.48460 5.52454 5.61356 5.68584 5.69789 5.77605 5.81089 5.96393 6.07025 6.09324 6.10415 6.14785 6.15525 6.26793 6.32844 6.35054 6.40415 6.44591 6.51558 6.68831 6.80156 6.86681 6.95386 7.06890 7.07933 7.10250 7.35237 7.45585 7.69275 8.22262 8.70838 8.81730 9.17021 9.43479 10.91374 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.019262 B = 0.007203 C = 0.006179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.287595 B = 3886.200384 C = 4530.626156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.186 4.186 3 C -0.077 4.077 4 C -0.076 4.076 5 C 0.515 3.485 6 O -0.554 6.554 7 N -0.698 5.698 8 C 0.236 3.764 9 H 0.049 0.951 10 C -0.524 4.524 11 H 0.076 0.924 12 C 0.082 3.918 13 N -0.891 5.891 14 Si 0.871 3.129 15 H -0.275 1.275 16 H -0.288 1.288 17 H -0.260 1.260 18 C -0.124 4.124 19 C -0.150 4.150 20 C -0.088 4.088 21 C -0.135 4.135 22 C -0.115 4.115 23 C -0.129 4.129 24 C -0.104 4.104 25 H 0.102 0.898 26 H 0.093 0.907 27 H 0.110 0.890 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.393 0.607 31 H 0.266 0.734 32 H 0.058 0.942 33 H 0.049 0.951 34 H 0.058 0.942 35 H 0.049 0.951 36 H 0.028 0.972 37 H 0.065 0.935 38 H 0.058 0.942 39 H 0.097 0.903 40 H 0.052 0.948 41 H 0.054 0.946 42 H 0.055 0.945 43 H 0.059 0.941 44 H 0.072 0.928 45 H 0.067 0.933 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.963 4.174 -8.076 15.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.204 4.204 3 C -0.114 4.114 4 C -0.079 4.079 5 C 0.301 3.699 6 O -0.434 6.434 7 N -0.348 5.348 8 C 0.133 3.867 9 H 0.066 0.934 10 C -0.562 4.562 11 H 0.094 0.906 12 C -0.122 4.122 13 N -0.527 5.527 14 Si 0.698 3.302 15 H -0.200 1.200 16 H -0.214 1.214 17 H -0.184 1.184 18 C -0.164 4.164 19 C -0.207 4.207 20 C -0.126 4.126 21 C -0.172 4.172 22 C -0.152 4.152 23 C -0.167 4.167 24 C -0.142 4.142 25 H 0.120 0.880 26 H 0.111 0.889 27 H 0.128 0.872 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.230 0.770 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.047 0.953 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.116 0.884 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.078 0.922 44 H 0.090 0.910 45 H 0.086 0.914 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 12.773 4.721 -7.402 15.499 hybrid contribution -0.357 0.316 0.284 0.555 sum 12.416 5.037 -7.118 15.172 Atomic orbital electron populations 1.23884 0.95725 1.02270 0.96821 1.22763 0.96135 0.97948 1.03593 1.20720 0.97477 0.96262 0.96944 1.20889 0.95403 0.97421 0.94183 1.20185 0.79641 0.82644 0.87459 1.90553 1.64631 1.41166 1.47058 1.46832 1.46169 1.20424 1.21420 1.19123 0.89675 0.97138 0.80760 0.93355 1.20984 0.94623 1.12248 1.28334 0.90554 1.24909 0.95407 0.96143 0.95755 1.69887 1.04356 1.35666 1.42812 0.86937 0.78517 0.83880 0.80843 1.20030 1.21393 1.18413 1.22068 0.96693 0.97711 0.99887 1.22024 0.98835 0.99521 1.00306 1.21297 0.97677 0.95484 0.98142 1.21812 0.96983 0.97025 1.01354 1.21506 0.97708 0.95159 1.00873 1.21696 0.98277 0.97321 0.99379 1.21604 0.96477 0.97277 0.98797 0.87986 0.88894 0.87231 0.91283 0.90722 0.77049 0.92392 0.92347 0.93252 0.92293 0.93211 0.95338 0.91664 0.92301 0.88446 0.92973 0.92743 0.92582 0.92207 0.90988 0.91415 0.91425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 13.91 29.02 0.40 -1.87 16 2 C -0.19 -2.54 5.81 -36.03 -0.21 -2.75 16 3 C -0.08 -0.99 4.72 -27.88 -0.13 -1.13 16 4 C -0.08 -1.07 0.50 -155.66 -0.08 -1.15 16 5 C 0.52 9.50 3.80 -10.98 -0.04 9.46 16 6 O -0.55 -11.78 10.80 5.56 0.06 -11.72 16 7 N -0.70 -13.76 4.26 -54.93 -0.23 -14.00 16 8 C 0.24 5.50 1.89 -69.08 -0.13 5.37 16 9 H 0.05 1.25 4.73 -51.93 -0.25 1.00 16 10 C -0.52 -13.82 9.04 -34.44 -0.31 -14.14 16 11 H 0.08 2.13 8.06 -52.49 -0.42 1.71 16 12 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 13 N -0.89 -25.98 13.96 55.43 0.77 -25.21 16 14 Si 0.87 21.68 26.99 -169.99 -4.59 17.09 16 15 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 16 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 17 H -0.26 -6.40 6.82 56.52 0.39 -6.01 16 18 C -0.12 -2.70 5.58 -26.73 -0.15 -2.85 16 19 C -0.15 -2.97 8.55 37.16 0.32 -2.66 16 20 C -0.09 -1.18 4.37 -26.73 -0.12 -1.30 16 21 C -0.13 -1.85 5.63 -26.73 -0.15 -2.00 16 22 C -0.11 -1.39 5.92 -26.73 -0.16 -1.54 16 23 C -0.13 -1.66 5.70 -26.70 -0.15 -1.81 16 24 C -0.10 -1.28 4.38 -26.70 -0.12 -1.40 16 25 H 0.10 1.57 8.06 -52.49 -0.42 1.15 16 26 H 0.09 1.43 7.84 -52.49 -0.41 1.02 16 27 H 0.11 1.36 6.67 -52.48 -0.35 1.01 16 28 H 0.07 0.96 7.79 -51.93 -0.40 0.56 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.39 7.19 5.01 -40.82 -0.20 6.98 16 31 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 32 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.06 1.14 3.33 -51.93 -0.17 0.96 16 35 H 0.05 1.06 7.93 -51.93 -0.41 0.65 16 36 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.94 8.10 -51.93 -0.42 0.52 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.10 1.65 5.51 -51.93 -0.29 1.37 16 40 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.07 1.11 4.97 -51.93 -0.26 0.85 16 45 H 0.07 0.84 5.97 -51.93 -0.31 0.53 16 46 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 336.00 15.07 5.06 5.06 Total: -1.00 -29.11 336.00 -7.75 -36.86 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: -7.70 Total: 9.50 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: -1.12 Total: -17.59 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: 0.54 Total: -39.20 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.06 Total: -11.72 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.59 Total: 17.09 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.11 -7.75 -36.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450618207.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.375 kcal (2) G-P(sol) polarization free energy of solvation -29.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds