Wall clock time and date at job start Tue Mar 31 2020 02:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50698 * 120.00309 * 2 1 4 4 C 1.53002 * 109.47161 * 124.99808 * 3 2 1 5 5 C 1.50702 * 109.47309 * 299.99813 * 4 3 2 6 6 O 1.21278 * 120.00187 * 240.00416 * 5 4 3 7 7 N 1.34781 * 119.99490 * 60.00029 * 5 4 3 8 8 C 1.46503 * 119.99578 * 180.02562 * 7 5 4 9 9 H 1.08998 * 109.47530 * 34.99810 * 8 7 5 10 10 C 1.50699 * 109.47126 * 155.00195 * 8 7 5 11 11 H 1.07996 * 120.00002 * 35.00430 * 10 8 7 12 12 C 1.37879 * 119.99728 * 215.00674 * 10 8 7 13 13 N 1.31521 * 119.99438 * 184.85980 * 12 10 8 14 14 Si 1.86796 * 120.00122 * 4.85748 * 12 10 8 15 15 H 1.48501 * 109.46969 * 84.81823 * 14 12 10 16 16 H 1.48502 * 109.47115 * 204.81475 * 14 12 10 17 17 H 1.48493 * 109.47444 * 324.81672 * 14 12 10 18 18 C 1.52996 * 109.46856 * 275.00006 * 8 7 5 19 19 C 1.53000 * 109.47516 * 66.40967 * 18 8 7 20 20 C 1.53004 * 109.46950 * 180.02562 * 4 3 2 21 21 C 1.53002 * 109.46950 * 179.97438 * 20 4 3 22 22 C 1.52999 * 109.47221 * 59.99942 * 21 20 4 23 23 C 1.53004 * 109.47206 * 299.99902 * 22 21 20 24 24 C 1.52999 * 109.47221 * 60.00107 * 4 3 2 25 25 H 1.08001 * 120.00292 * 179.97438 * 1 2 3 26 26 H 1.08000 * 119.99651 * 0.02562 * 1 2 3 27 27 H 1.08003 * 119.99761 * 179.97438 * 2 1 3 28 28 H 1.08993 * 109.47107 * 4.99777 * 3 2 1 29 29 H 1.09000 * 109.47292 * 244.99766 * 3 2 1 30 30 H 0.96997 * 120.00422 * 0.02562 * 7 5 4 31 31 H 0.96999 * 119.99484 * 179.97438 * 13 12 10 32 32 H 1.09007 * 109.47381 * 186.41482 * 18 8 7 33 33 H 1.09004 * 109.47701 * 306.40797 * 18 8 7 34 34 H 1.08997 * 109.46915 * 300.00162 * 19 18 8 35 35 H 1.09007 * 109.46978 * 60.00009 * 19 18 8 36 36 H 1.08999 * 109.47412 * 179.97438 * 19 18 8 37 37 H 1.08993 * 109.47347 * 59.99951 * 20 4 3 38 38 H 1.09001 * 109.46817 * 299.99520 * 20 4 3 39 39 H 1.09000 * 109.46984 * 299.99982 * 21 20 4 40 40 H 1.09000 * 109.47257 * 179.97438 * 21 20 4 41 41 H 1.09001 * 109.47569 * 59.99853 * 22 21 20 42 42 H 1.08998 * 109.46927 * 180.02562 * 22 21 20 43 43 H 1.08993 * 109.47347 * 179.97438 * 23 22 21 44 44 H 1.09001 * 109.46817 * 300.00412 * 23 22 21 45 45 H 1.09005 * 109.46756 * 299.99701 * 24 4 3 46 46 H 1.09000 * 109.47108 * 60.00117 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0350 1.3330 1.1817 5 6 2.2638 1.1983 2.4694 6 8 2.3205 2.0757 3.3048 7 7 1.5111 0.1028 2.6925 8 6 0.7609 -0.0279 3.9441 9 1 0.4064 0.9534 4.2595 10 6 -0.4172 -0.9430 3.7304 11 1 -0.3327 -1.7842 3.0585 12 6 -1.6031 -0.7061 4.3928 13 7 -2.5998 -1.5568 4.2812 14 14 -1.7939 0.8231 5.4485 15 1 -2.2032 1.9666 4.5940 16 1 -2.8307 0.5832 6.4843 17 1 -0.4998 1.1351 6.1065 18 6 1.6714 -0.6129 5.0256 19 6 2.7795 0.3890 5.3563 20 6 3.7996 2.6583 1.1820 21 6 4.7707 2.6865 2.3640 22 6 5.7606 1.5266 2.2387 23 6 4.9960 0.2013 2.2384 24 6 4.0245 0.1728 1.0560 25 1 -0.5401 -0.9353 -0.0004 26 1 -0.5399 0.9353 -0.0004 27 1 1.8499 -0.9354 0.0004 28 1 1.3587 2.1316 0.0895 29 1 2.6214 1.4025 -0.9313 30 1 1.4660 -0.5991 2.0245 31 1 -3.4340 -1.3904 4.7474 32 1 1.0861 -0.8164 5.9224 33 1 2.1161 -1.5401 4.6640 34 1 3.3648 0.5924 4.4596 35 1 2.3349 1.3162 5.7181 36 1 3.4279 -0.0276 6.1271 37 1 3.0945 3.4846 1.2717 38 1 4.3575 2.7561 0.2506 39 1 4.2125 2.5888 3.2952 40 1 5.3158 3.6304 2.3640 41 1 6.3188 1.6242 1.3075 42 1 6.4521 1.5465 3.0810 43 1 5.7011 -0.6249 2.1486 44 1 4.4378 0.1037 3.1695 45 1 3.4794 -0.7712 1.0561 46 1 4.5823 0.2703 0.1247 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000450618207.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:50 Heat of formation + Delta-G solvation = -63.470907 kcal Electronic energy + Delta-G solvation = -24373.377447 eV Core-core repulsion = 21261.528416 eV Total energy + Delta-G solvation = -3111.849031 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.86973 -38.52080 -36.84870 -36.03538 -34.30485 -32.88169 -32.06175 -31.48518 -29.32925 -26.92652 -25.00317 -23.91948 -23.61779 -21.87018 -21.31718 -20.57826 -20.36205 -18.74741 -17.52855 -17.05171 -16.54338 -16.20930 -16.04808 -15.48511 -15.06644 -14.89837 -14.74625 -14.51221 -14.45332 -14.02366 -13.78027 -13.66784 -13.29811 -13.13071 -12.96448 -12.84984 -12.78395 -12.55989 -12.34000 -12.31510 -11.99685 -11.96395 -11.86695 -11.62081 -11.29088 -11.17265 -10.98896 -10.81295 -10.80948 -10.20571 -9.99245 -9.48157 -8.37228 -6.40163 1.25371 1.30229 1.41134 1.44306 2.01391 2.26369 2.63373 3.06841 3.66894 3.83197 3.87261 4.13957 4.16586 4.31005 4.32352 4.36345 4.41932 4.48268 4.54979 4.61065 4.64478 4.71969 4.78839 4.81655 4.89280 4.98767 5.02989 5.11861 5.13287 5.14955 5.20291 5.26687 5.29635 5.34997 5.42516 5.45410 5.46859 5.50775 5.61890 5.76394 5.80573 5.92955 5.95431 6.19694 6.63985 7.09401 7.25480 7.68043 8.77855 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.019262 B = 0.007203 C = 0.006179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.287595 B = 3886.200384 C = 4530.626156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.170 4.170 3 C -0.075 4.075 4 C -0.067 4.067 5 C 0.511 3.489 6 O -0.583 6.583 7 N -0.700 5.700 8 C 0.242 3.758 9 H 0.024 0.976 10 C -0.514 4.514 11 H 0.055 0.945 12 C 0.037 3.963 13 N -0.929 5.929 14 Si 0.919 3.081 15 H -0.278 1.278 16 H -0.280 1.280 17 H -0.259 1.259 18 C -0.122 4.122 19 C -0.139 4.139 20 C -0.087 4.087 21 C -0.136 4.136 22 C -0.110 4.110 23 C -0.131 4.131 24 C -0.102 4.102 25 H 0.092 0.908 26 H 0.083 0.917 27 H 0.128 0.872 28 H 0.055 0.945 29 H 0.113 0.887 30 H 0.399 0.601 31 H 0.268 0.732 32 H 0.044 0.956 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.029 0.971 36 H 0.052 0.948 37 H 0.046 0.954 38 H 0.094 0.906 39 H 0.059 0.941 40 H 0.063 0.937 41 H 0.080 0.920 42 H 0.057 0.943 43 H 0.079 0.921 44 H 0.040 0.960 45 H 0.067 0.933 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.820 4.563 -9.554 19.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.188 4.188 3 C -0.113 4.113 4 C -0.071 4.071 5 C 0.299 3.701 6 O -0.464 6.464 7 N -0.351 5.351 8 C 0.137 3.863 9 H 0.042 0.958 10 C -0.553 4.553 11 H 0.073 0.927 12 C -0.163 4.163 13 N -0.568 5.568 14 Si 0.745 3.255 15 H -0.204 1.204 16 H -0.205 1.205 17 H -0.183 1.183 18 C -0.161 4.161 19 C -0.196 4.196 20 C -0.125 4.125 21 C -0.173 4.173 22 C -0.147 4.147 23 C -0.169 4.169 24 C -0.140 4.140 25 H 0.110 0.890 26 H 0.101 0.899 27 H 0.146 0.854 28 H 0.073 0.927 29 H 0.131 0.869 30 H 0.238 0.762 31 H 0.077 0.923 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.048 0.952 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.112 0.888 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.099 0.901 42 H 0.076 0.924 43 H 0.097 0.903 44 H 0.059 0.941 45 H 0.085 0.915 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 15.647 5.113 -8.892 18.710 hybrid contribution -1.178 0.199 0.712 1.391 sum 14.470 5.313 -8.180 17.450 Atomic orbital electron populations 1.23832 0.96642 1.01469 0.99538 1.22998 0.95587 0.99198 1.01016 1.20780 0.97269 0.95146 0.98069 1.20904 0.95519 0.99128 0.91510 1.21025 0.79000 0.81269 0.88789 1.90557 1.65364 1.41943 1.48581 1.46620 1.46438 1.21538 1.20461 1.18830 0.89582 0.94995 0.82859 0.95806 1.21161 0.95561 1.11710 1.26844 0.92678 1.25489 0.95517 0.98202 0.97122 1.69976 1.05025 1.37303 1.44530 0.86168 0.78502 0.81076 0.79719 1.20415 1.20548 1.18328 1.21969 0.96852 0.98553 0.98702 1.21903 0.98375 0.97993 1.01361 1.21332 0.97423 0.94118 0.99590 1.21759 0.97267 0.98585 0.99705 1.21482 0.97200 0.93713 1.02322 1.21711 0.98547 0.98573 0.98045 1.21666 0.96066 0.96066 1.00182 0.88955 0.89866 0.85433 0.92667 0.86921 0.76232 0.92275 0.93697 0.92246 0.91636 0.95224 0.92913 0.93474 0.88788 0.92225 0.91873 0.90131 0.92425 0.90260 0.94129 0.91457 0.87984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.40 13.91 67.78 0.94 -4.46 16 2 C -0.17 -4.33 5.81 25.65 0.15 -4.18 16 3 C -0.08 -1.74 4.72 29.85 0.14 -1.60 16 4 C -0.07 -1.72 0.50 -52.93 -0.03 -1.75 16 5 C 0.51 18.46 3.80 87.66 0.33 18.79 16 6 O -0.58 -24.91 10.80 -3.02 -0.03 -24.94 16 7 N -0.70 -27.39 4.26 -446.10 -1.90 -29.29 16 8 C 0.24 11.40 1.89 44.24 0.08 11.49 16 9 H 0.02 1.26 4.73 -2.39 -0.01 1.25 16 10 C -0.51 -27.74 9.04 25.60 0.23 -27.51 16 11 H 0.06 3.16 8.06 -2.91 -0.02 3.14 16 12 C 0.04 2.08 5.47 84.65 0.46 2.54 16 13 N -0.93 -55.50 13.96 21.45 0.30 -55.20 16 14 Si 0.92 45.68 26.99 68.60 1.85 47.53 16 15 H -0.28 -13.87 7.11 99.48 0.71 -13.16 16 16 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 17 H -0.26 -12.71 6.82 99.48 0.68 -12.03 16 18 C -0.12 -5.26 5.58 30.59 0.17 -5.09 16 19 C -0.14 -5.46 8.55 71.98 0.62 -4.84 16 20 C -0.09 -2.06 4.37 30.60 0.13 -1.93 16 21 C -0.14 -3.42 5.63 30.59 0.17 -3.25 16 22 C -0.11 -2.24 5.92 30.60 0.18 -2.06 16 23 C -0.13 -2.92 5.70 30.61 0.17 -2.75 16 24 C -0.10 -2.10 4.38 30.61 0.13 -1.96 16 25 H 0.09 2.94 8.06 -2.91 -0.02 2.92 16 26 H 0.08 2.64 7.84 -2.91 -0.02 2.62 16 27 H 0.13 2.80 6.67 -2.91 -0.02 2.78 16 28 H 0.05 1.45 7.79 -2.39 -0.02 1.43 16 29 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.40 14.38 5.01 -92.71 -0.46 13.92 16 31 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 32 H 0.04 2.03 8.14 -2.38 -0.02 2.01 16 33 H 0.06 2.42 8.14 -2.38 -0.02 2.40 16 34 H 0.06 2.49 3.33 -2.39 -0.01 2.49 16 35 H 0.03 1.25 7.93 -2.38 -0.02 1.23 16 36 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.05 1.28 8.10 -2.39 -0.02 1.26 16 38 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.06 1.99 5.51 -2.39 -0.01 1.97 16 40 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.04 1.16 4.97 -2.39 -0.01 1.15 16 45 H 0.07 1.40 5.97 -2.38 -0.01 1.39 16 46 H 0.10 1.48 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -64.76 336.00 4.58 -60.18 By element: Atomic # 1 Polarization: 29.82 SS G_CDS: 0.46 Total: 30.28 kcal Atomic # 6 Polarization: -32.46 SS G_CDS: 3.90 Total: -28.56 kcal Atomic # 7 Polarization: -82.89 SS G_CDS: -1.60 Total: -84.49 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: -0.03 Total: -24.94 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 1.85 Total: 47.53 kcal Total: -64.76 4.58 -60.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450618207.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.291 kcal (2) G-P(sol) polarization free energy of solvation -64.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds