Wall clock time and date at job start Tue Mar 31 2020 02:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47032 * 2 1 4 4 H 1.08995 * 109.46952 * 304.99775 * 3 2 1 5 5 C 1.50706 * 109.46902 * 184.99971 * 3 2 1 6 6 H 1.08001 * 120.00085 * 239.99911 * 5 3 2 7 7 C 1.37874 * 119.99736 * 60.00177 * 5 3 2 8 8 N 1.31514 * 120.00336 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99548 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47282 * 59.99921 * 9 7 5 11 11 H 1.48510 * 109.47078 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47209 * 299.99623 * 9 7 5 13 13 N 1.46491 * 109.47131 * 65.00183 * 3 2 1 14 14 C 1.34781 * 120.00059 * 275.00130 * 13 3 2 15 15 O 1.21614 * 119.99871 * 359.97438 * 14 13 3 16 16 C 1.47104 * 120.00306 * 180.02562 * 14 13 3 17 17 C 1.31543 * 118.10459 * 186.03455 * 16 14 13 18 18 C 1.50698 * 118.10572 * 0.40166 * 17 16 14 19 19 C 1.50098 * 123.78859 * 180.67607 * 17 16 14 20 20 C 1.53147 * 110.05501 * 342.39974 * 19 17 16 21 21 C 1.53000 * 109.81054 * 290.34314 * 20 19 17 22 22 C 1.52993 * 109.58000 * 169.67521 * 20 19 17 23 23 C 1.53365 * 108.37830 * 50.07384 * 20 19 17 24 24 C 1.50097 * 118.10048 * 6.01290 * 16 14 13 25 25 H 1.09002 * 109.47080 * 300.00109 * 1 2 3 26 26 H 1.09005 * 109.47377 * 59.99983 * 1 2 3 27 27 H 1.08997 * 109.46897 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47247 * 240.00419 * 2 1 3 29 29 H 1.08997 * 109.47143 * 120.00262 * 2 1 3 30 30 H 0.97003 * 119.99948 * 179.97438 * 8 7 5 31 31 H 0.97005 * 120.00175 * 94.99284 * 13 3 2 32 32 H 1.08998 * 109.47567 * 55.50789 * 18 17 16 33 33 H 1.09001 * 109.47526 * 175.51083 * 18 17 16 34 34 H 1.09005 * 109.47027 * 295.50720 * 18 17 16 35 35 H 1.09007 * 109.35727 * 102.77912 * 19 17 16 36 36 H 1.09006 * 109.36236 * 222.36751 * 19 17 16 37 37 H 1.08993 * 109.47502 * 178.96773 * 21 20 19 38 38 H 1.09003 * 109.47261 * 298.96587 * 21 20 19 39 39 H 1.09002 * 109.47600 * 58.96368 * 21 20 19 40 40 H 1.09005 * 109.46913 * 301.17077 * 22 20 19 41 41 H 1.09003 * 109.47744 * 61.17105 * 22 20 19 42 42 H 1.09007 * 109.47157 * 181.17233 * 22 20 19 43 43 H 1.09006 * 109.62617 * 172.12234 * 23 20 19 44 44 H 1.08998 * 109.79082 * 51.63059 * 23 20 19 45 45 H 1.09008 * 109.36289 * 283.03176 * 24 16 14 46 46 H 1.08994 * 109.36606 * 42.63056 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1432 0.8784 -1.2280 8 7 3.4061 0.3366 -2.1729 9 14 6.0049 0.8813 -1.3818 10 1 6.5975 0.1473 -0.2348 11 1 6.3978 0.2178 -2.6510 12 1 6.4994 2.2815 -1.3822 13 7 1.6524 2.0975 1.2517 14 6 0.4351 2.6644 1.3670 15 8 -0.3415 2.6326 0.4316 16 6 0.0461 3.3225 2.6237 17 6 -1.1903 3.7566 2.7391 18 6 -2.1289 3.5426 1.5797 19 6 -1.7186 4.4579 3.9564 20 6 -0.7943 4.2048 5.1510 21 6 -0.8998 2.7422 5.5874 22 6 -1.1916 5.1211 6.3099 23 6 0.6457 4.5117 4.7217 24 6 1.0829 3.4595 3.7004 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.8292 -0.0612 -2.9499 31 1 2.2719 2.1231 1.9978 32 1 -2.1605 2.4824 1.3286 33 1 -3.1281 3.8811 1.8538 34 1 -1.7770 4.1098 0.7178 35 1 -1.7760 5.5286 3.7602 36 1 -2.7152 4.0810 4.1867 37 1 -0.2265 2.5636 6.4257 38 1 -1.9241 2.5268 5.8920 39 1 -0.6242 2.0939 4.7556 40 1 -1.1229 6.1611 5.9907 41 1 -2.2152 4.9009 6.6129 42 1 -0.5196 4.9543 7.1518 43 1 1.3028 4.4738 5.5906 44 1 0.6929 5.5024 4.2697 45 1 1.2115 2.5004 4.2023 46 1 2.0302 3.7612 3.2537 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000450622067.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:59 Heat of formation + Delta-G solvation = -66.932586 kcal Electronic energy + Delta-G solvation = -23241.302129 eV Core-core repulsion = 20129.302989 eV Total energy + Delta-G solvation = -3111.999140 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.50011 -39.64830 -37.08318 -34.66486 -34.47872 -33.23371 -32.09095 -29.14068 -28.14624 -27.95721 -27.49552 -25.02026 -23.83250 -22.71807 -21.15914 -20.52868 -19.21597 -17.88061 -17.26923 -16.94511 -16.44990 -16.14243 -15.73044 -15.36144 -15.06694 -14.99953 -14.54874 -14.31651 -14.26124 -13.75221 -13.55365 -13.28014 -13.21811 -13.16948 -12.96211 -12.81954 -12.70839 -12.65446 -12.52462 -12.50807 -12.18566 -12.14281 -11.98878 -11.58575 -11.45726 -11.33830 -11.07925 -11.02665 -10.54579 -10.05621 -9.81135 -9.40466 -8.15834 -6.33405 0.63356 1.43635 1.45673 1.53434 2.37416 2.50819 2.79428 3.13256 3.65521 3.74841 3.93700 4.14616 4.20371 4.29835 4.47757 4.50633 4.55359 4.56585 4.60680 4.73932 4.75751 4.88642 4.90906 4.96942 5.00020 5.02539 5.05503 5.07958 5.11887 5.14422 5.22741 5.30151 5.32053 5.41852 5.44061 5.46370 5.55979 5.60581 5.64962 5.73398 5.79288 5.85797 6.03579 6.18291 6.74839 7.09298 7.34239 7.66905 8.89239 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.024531 B = 0.004598 C = 0.004163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.151791 B = 6088.440212 C = 6724.386163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.119 4.119 3 C 0.280 3.720 4 H -0.004 1.004 5 C -0.550 4.550 6 H 0.068 0.932 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.970 3.030 10 H -0.264 1.264 11 H -0.285 1.285 12 H -0.272 1.272 13 N -0.706 5.706 14 C 0.522 3.478 15 O -0.580 6.580 16 C -0.193 4.193 17 C -0.037 4.037 18 C -0.106 4.106 19 C -0.073 4.073 20 C -0.063 4.063 21 C -0.144 4.144 22 C -0.135 4.135 23 C -0.102 4.102 24 C -0.078 4.078 25 H 0.042 0.958 26 H 0.026 0.974 27 H 0.043 0.957 28 H 0.071 0.929 29 H 0.037 0.963 30 H 0.265 0.735 31 H 0.398 0.602 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.056 0.944 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.064 0.936 38 H 0.059 0.941 39 H 0.042 0.958 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.084 0.916 44 H 0.064 0.936 45 H 0.080 0.920 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.822 7.822 18.107 21.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.158 4.158 3 C 0.176 3.824 4 H 0.014 0.986 5 C -0.588 4.588 6 H 0.086 0.914 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.794 3.206 10 H -0.189 1.189 11 H -0.211 1.211 12 H -0.197 1.197 13 N -0.355 5.355 14 C 0.313 3.687 15 O -0.463 6.463 16 C -0.196 4.196 17 C -0.039 4.039 18 C -0.162 4.162 19 C -0.110 4.110 20 C -0.063 4.063 21 C -0.201 4.201 22 C -0.192 4.192 23 C -0.139 4.139 24 C -0.115 4.115 25 H 0.061 0.939 26 H 0.045 0.955 27 H 0.062 0.938 28 H 0.090 0.910 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.233 0.767 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.112 0.888 36 H 0.110 0.890 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.061 0.939 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.102 0.898 44 H 0.083 0.917 45 H 0.099 0.901 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.319 7.684 17.253 20.638 hybrid contribution 1.256 -0.364 -0.746 1.505 sum -7.063 7.320 16.507 19.390 Atomic orbital electron populations 1.21653 0.96966 0.98935 1.00206 1.21766 0.93784 0.99264 1.01021 1.18306 0.93487 0.89063 0.81498 0.98620 1.21554 0.91560 1.39002 1.06692 0.91384 1.25763 1.03322 0.94320 0.94962 1.70045 1.37115 1.38312 1.09826 0.85440 0.79111 0.78434 0.77595 1.18906 1.21077 1.19711 1.46234 1.15726 1.56246 1.17266 1.19201 0.81769 0.78805 0.88921 1.90738 1.51535 1.61526 1.42510 1.20674 0.97278 1.06352 0.95266 1.21848 0.93196 0.92303 0.96553 1.21009 0.97432 1.01871 0.95875 1.20753 0.99585 1.00373 0.90260 1.20627 0.94579 0.96305 0.94761 1.21925 1.02081 0.95114 1.00992 1.21803 1.01854 0.98779 0.96783 1.21654 0.96222 0.97871 0.98183 1.20377 0.95924 1.00974 0.94250 0.93853 0.95517 0.93782 0.91047 0.94445 0.92616 0.76692 0.92606 0.91444 0.92523 0.88791 0.89045 0.91702 0.92178 0.93914 0.92101 0.91876 0.91806 0.89789 0.91731 0.90137 0.91540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.61 8.51 71.98 0.61 -5.00 16 2 C -0.12 -6.09 5.45 30.59 0.17 -5.92 16 3 C 0.28 14.86 2.24 44.25 0.10 14.96 16 4 H 0.00 -0.26 7.58 -2.39 -0.02 -0.28 16 5 C -0.55 -29.91 8.73 25.60 0.22 -29.68 16 6 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 7 C 0.02 0.90 5.29 84.65 0.45 1.35 16 8 N -0.91 -53.22 11.29 21.45 0.24 -52.98 16 9 Si 0.97 42.72 29.54 68.60 2.03 44.74 16 10 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 11 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 12 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 13 N -0.71 -30.83 4.94 -449.71 -2.22 -33.06 16 14 C 0.52 21.76 6.18 86.57 0.53 22.30 16 15 O -0.58 -27.73 9.54 -4.08 -0.04 -27.77 16 16 C -0.19 -6.01 5.11 -18.28 -0.09 -6.10 16 17 C -0.04 -1.02 5.48 -17.19 -0.09 -1.11 16 18 C -0.11 -3.26 8.16 71.24 0.58 -2.67 16 19 C -0.07 -1.36 4.46 29.71 0.13 -1.22 16 20 C -0.06 -1.01 0.79 -52.01 -0.04 -1.05 16 21 C -0.14 -2.48 7.81 71.98 0.56 -1.92 16 22 C -0.14 -1.58 8.49 71.98 0.61 -0.97 16 23 C -0.10 -1.85 4.93 30.72 0.15 -1.70 16 24 C -0.08 -1.91 4.24 29.66 0.13 -1.78 16 25 H 0.04 1.96 5.64 -2.39 -0.01 1.95 16 26 H 0.03 1.33 7.84 -2.38 -0.02 1.31 16 27 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.07 4.05 5.95 -2.39 -0.01 4.03 16 29 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 31 H 0.40 15.26 6.92 -92.70 -0.64 14.61 16 32 H 0.06 2.02 6.85 -2.39 -0.02 2.01 16 33 H 0.07 1.60 7.93 -2.39 -0.02 1.59 16 34 H 0.06 2.04 7.06 -2.38 -0.02 2.02 16 35 H 0.09 1.54 8.11 -2.38 -0.02 1.52 16 36 H 0.09 1.46 8.12 -2.38 -0.02 1.44 16 37 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.04 0.93 5.68 -2.39 -0.01 0.92 16 40 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 41 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 43 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 44 H 0.06 1.19 8.12 -2.39 -0.02 1.17 16 45 H 0.08 1.88 6.92 -2.38 -0.02 1.86 16 46 H 0.07 1.71 7.48 -2.39 -0.02 1.69 16 Total: -1.00 -65.29 343.89 4.34 -60.96 By element: Atomic # 1 Polarization: 28.34 SS G_CDS: 0.31 Total: 28.65 kcal Atomic # 6 Polarization: -24.56 SS G_CDS: 4.02 Total: -20.54 kcal Atomic # 7 Polarization: -84.06 SS G_CDS: -1.98 Total: -86.04 kcal Atomic # 8 Polarization: -27.73 SS G_CDS: -0.04 Total: -27.77 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.74 kcal Total: -65.29 4.34 -60.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450622067.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.975 kcal (2) G-P(sol) polarization free energy of solvation -65.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds