Wall clock time and date at job start Tue Mar 31 2020 02:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47514 * 2 1 4 4 H 1.09002 * 109.46877 * 55.00108 * 3 2 1 5 5 C 1.50698 * 109.47322 * 174.99977 * 3 2 1 6 6 H 1.08001 * 120.00201 * 120.00066 * 5 3 2 7 7 C 1.37877 * 119.99788 * 300.00132 * 5 3 2 8 8 N 1.31523 * 120.00035 * 179.97438 * 7 5 3 9 9 Si 1.86797 * 120.00207 * 0.02562 * 7 5 3 10 10 H 1.48501 * 109.47437 * 89.99970 * 9 7 5 11 11 H 1.48509 * 109.47168 * 210.00150 * 9 7 5 12 12 H 1.48502 * 109.47060 * 329.99511 * 9 7 5 13 13 N 1.46497 * 109.47058 * 294.99949 * 3 2 1 14 14 C 1.34774 * 119.99872 * 85.00174 * 13 3 2 15 15 O 1.21615 * 120.00517 * 359.97438 * 14 13 3 16 16 C 1.47100 * 119.99869 * 180.02562 * 14 13 3 17 17 C 1.31557 * 118.10658 * 186.03519 * 16 14 13 18 18 C 1.50697 * 118.10094 * 0.41900 * 17 16 14 19 19 C 1.50093 * 123.79388 * 180.44004 * 17 16 14 20 20 C 1.52998 * 110.13557 * 342.83533 * 19 17 16 21 21 C 1.53005 * 109.62865 * 290.04080 * 20 19 17 22 22 C 1.53001 * 109.79744 * 169.55068 * 20 19 17 23 23 C 1.53366 * 108.51274 * 49.74241 * 20 19 17 24 24 C 1.50092 * 118.10752 * 6.05366 * 16 14 13 25 25 H 1.08995 * 109.47700 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47144 * 300.00720 * 1 2 3 27 27 H 1.09009 * 109.47001 * 59.99496 * 1 2 3 28 28 H 1.08999 * 109.47052 * 240.00062 * 2 1 3 29 29 H 1.08996 * 109.47146 * 120.00157 * 2 1 3 30 30 H 0.96996 * 120.00241 * 179.97438 * 8 7 5 31 31 H 0.96998 * 120.00090 * 264.99945 * 13 3 2 32 32 H 1.09000 * 109.47305 * 175.52806 * 18 17 16 33 33 H 1.09000 * 109.47749 * 295.53115 * 18 17 16 34 34 H 1.09001 * 109.47435 * 55.52580 * 18 17 16 35 35 H 1.08994 * 109.36024 * 222.62703 * 19 17 16 36 36 H 1.09004 * 109.35731 * 103.03708 * 19 17 16 37 37 H 1.09004 * 109.47096 * 179.01966 * 21 20 19 38 38 H 1.09001 * 109.47108 * 299.01702 * 21 20 19 39 39 H 1.09001 * 109.47444 * 59.01486 * 21 20 19 40 40 H 1.09007 * 109.46796 * 300.88159 * 22 20 19 41 41 H 1.08999 * 109.47028 * 60.88076 * 22 20 19 42 42 H 1.08999 * 109.47524 * 180.88573 * 22 20 19 43 43 H 1.09001 * 109.63458 * 172.26099 * 23 20 19 44 44 H 1.09003 * 109.78645 * 51.77013 * 23 20 19 45 45 H 1.09005 * 109.35854 * 42.60865 * 24 16 14 46 46 H 1.09003 * 109.35886 * 283.01688 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4442 0.1238 6 1 4.1473 1.8888 -0.6523 7 6 4.1432 0.8783 1.2280 8 7 5.4540 0.8793 1.3359 9 14 3.0963 0.1087 2.5700 10 1 2.8754 -1.3274 2.2633 11 1 3.7936 0.2346 3.8752 12 1 1.7877 0.8073 2.6387 13 7 1.6525 2.0975 -1.2518 14 6 0.4353 2.6645 -1.3669 15 8 -0.3416 2.6320 -0.4318 16 6 0.0460 3.3216 -2.6240 17 6 -1.0999 3.9670 -2.6570 18 6 -1.9333 3.9984 -1.4018 19 6 -1.6255 4.6735 -3.8725 20 6 -0.4964 4.8989 -4.8801 21 6 0.4756 5.9481 -4.3365 22 6 -1.0780 5.3782 -6.2116 23 6 0.2424 3.5712 -5.0886 24 6 0.9788 3.2168 -3.7952 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5140 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 5.8771 0.4815 2.1128 31 1 2.2720 2.1231 -1.9977 32 1 -2.8062 4.6315 -1.5609 33 1 -2.2578 2.9874 -1.1556 34 1 -1.3387 4.3990 -0.5808 35 1 -2.0447 5.6356 -3.5783 36 1 -2.4056 4.0676 -4.3336 37 1 1.2882 6.0940 -5.0484 38 1 -0.0519 6.8905 -4.1893 39 1 0.8832 5.6073 -3.3847 40 1 -1.7753 4.6321 -6.5930 41 1 -1.6024 6.3218 -6.0604 42 1 -0.2710 5.5220 -6.9300 43 1 0.9604 3.6755 -5.9021 44 1 -0.4728 2.7849 -5.3301 45 1 1.3595 2.1977 -3.8638 46 1 1.8136 3.9035 -3.6548 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000450622068.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:03 Heat of formation + Delta-G solvation = -61.111046 kcal Electronic energy + Delta-G solvation = -23304.495466 eV Core-core repulsion = 20192.748766 eV Total energy + Delta-G solvation = -3111.746699 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.56392 -39.73752 -37.26739 -34.69715 -34.52757 -33.60183 -32.22422 -29.53812 -28.17696 -27.98430 -27.57328 -24.66191 -23.84833 -23.05379 -21.30575 -20.59529 -19.35895 -18.15097 -17.45824 -17.12076 -16.45225 -16.20454 -15.79743 -15.37216 -15.22903 -14.94975 -14.91806 -14.48824 -14.20761 -13.95715 -13.73190 -13.60144 -13.43717 -13.21629 -12.94505 -12.88538 -12.77913 -12.70772 -12.53431 -12.51487 -12.39400 -12.12577 -11.86015 -11.49983 -11.37046 -11.31767 -11.24292 -11.05633 -10.86537 -10.13992 -9.86469 -9.49551 -8.39382 -6.44630 0.60032 1.25076 1.32977 1.43294 2.24659 2.42872 2.62229 2.96636 3.64706 3.70722 3.92516 4.11813 4.18888 4.22255 4.26305 4.31702 4.46098 4.50044 4.55102 4.61211 4.73444 4.82958 4.88205 4.90549 4.96600 4.98287 5.00224 5.02963 5.05255 5.10940 5.12488 5.13827 5.21925 5.28470 5.31250 5.41264 5.42381 5.45330 5.51058 5.59219 5.68751 5.75303 5.86255 6.17797 6.57111 6.97457 7.19334 7.54416 8.76021 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.027265 B = 0.004742 C = 0.004372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.721620 B = 5902.795458 C = 6402.828205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.136 4.136 3 C 0.251 3.749 4 H 0.020 0.980 5 C -0.534 4.534 6 H 0.053 0.947 7 C 0.030 3.970 8 N -0.934 5.934 9 Si 0.938 3.062 10 H -0.259 1.259 11 H -0.292 1.292 12 H -0.262 1.262 13 N -0.702 5.702 14 C 0.528 3.472 15 O -0.574 6.574 16 C -0.194 4.194 17 C -0.033 4.033 18 C -0.107 4.107 19 C -0.073 4.073 20 C -0.063 4.063 21 C -0.145 4.145 22 C -0.135 4.135 23 C -0.101 4.101 24 C -0.080 4.080 25 H 0.057 0.943 26 H 0.037 0.963 27 H 0.053 0.947 28 H 0.065 0.935 29 H 0.043 0.957 30 H 0.270 0.730 31 H 0.401 0.599 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.054 0.946 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.040 0.960 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.081 0.919 44 H 0.068 0.932 45 H 0.069 0.931 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.865 7.220 -15.448 22.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.174 4.174 3 C 0.146 3.854 4 H 0.038 0.962 5 C -0.572 4.572 6 H 0.071 0.929 7 C -0.170 4.170 8 N -0.573 5.573 9 Si 0.765 3.235 10 H -0.185 1.185 11 H -0.220 1.220 12 H -0.186 1.186 13 N -0.351 5.351 14 C 0.319 3.681 15 O -0.457 6.457 16 C -0.197 4.197 17 C -0.035 4.035 18 C -0.163 4.163 19 C -0.110 4.110 20 C -0.063 4.063 21 C -0.202 4.202 22 C -0.192 4.192 23 C -0.139 4.139 24 C -0.117 4.117 25 H 0.076 0.924 26 H 0.056 0.944 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.061 0.939 30 H 0.079 0.921 31 H 0.236 0.764 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.109 0.891 36 H 0.115 0.885 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.059 0.941 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.099 0.901 44 H 0.087 0.913 45 H 0.087 0.913 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -15.220 7.131 -14.675 22.313 hybrid contribution 0.696 -0.554 0.988 1.330 sum -14.525 6.577 -13.687 21.013 Atomic orbital electron populations 1.21736 0.95148 1.00385 1.01558 1.22187 0.95911 0.98523 1.00799 1.18737 0.93048 0.89595 0.84026 0.96204 1.21304 0.90467 1.38506 1.06900 0.92878 1.25547 0.95745 0.95846 0.99816 1.69981 1.10254 1.46217 1.30856 0.86014 0.79243 0.79926 0.78305 1.18516 1.21966 1.18635 1.45992 1.15948 1.56386 1.16748 1.19134 0.81485 0.78569 0.88884 1.90734 1.51568 1.61107 1.42341 1.20610 0.99215 1.05279 0.94643 1.21867 0.92804 0.91812 0.97009 1.21033 0.98499 1.02048 0.94719 1.20717 0.98162 1.00495 0.91603 1.20605 0.94893 0.95135 0.95698 1.21947 0.99286 0.98325 1.00692 1.21802 1.01049 1.01458 0.94909 1.21645 0.99467 0.96864 0.95890 1.20379 0.97037 1.01902 0.92381 0.92426 0.94415 0.92802 0.91623 0.93876 0.92077 0.76387 0.91455 0.91801 0.92719 0.89059 0.88489 0.91963 0.92179 0.94051 0.91898 0.91915 0.91974 0.90056 0.91311 0.91258 0.90710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.22 8.51 71.98 0.61 -4.60 16 2 C -0.14 -6.05 5.11 30.59 0.16 -5.89 16 3 C 0.25 12.25 1.83 44.25 0.08 12.33 16 4 H 0.02 1.09 6.64 -2.39 -0.02 1.08 16 5 C -0.53 -29.93 9.31 25.60 0.24 -29.69 16 6 H 0.05 3.18 7.98 -2.91 -0.02 3.15 16 7 C 0.03 1.73 5.45 84.65 0.46 2.20 16 8 N -0.93 -56.95 13.96 21.45 0.30 -56.65 16 9 Si 0.94 45.80 24.41 68.60 1.67 47.47 16 10 H -0.26 -11.91 6.83 99.48 0.68 -11.23 16 11 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16 12 H -0.26 -12.74 6.53 99.48 0.65 -12.10 16 13 N -0.70 -28.96 4.94 -449.71 -2.22 -31.18 16 14 C 0.53 20.31 6.18 86.57 0.53 20.84 16 15 O -0.57 -24.80 9.54 -4.08 -0.04 -24.84 16 16 C -0.19 -5.68 5.11 -18.30 -0.09 -5.78 16 17 C -0.03 -0.84 5.48 -17.21 -0.09 -0.93 16 18 C -0.11 -2.99 8.16 71.23 0.58 -2.41 16 19 C -0.07 -1.26 4.46 29.66 0.13 -1.12 16 20 C -0.06 -0.99 0.79 -52.06 -0.04 -1.03 16 21 C -0.15 -2.56 7.79 71.98 0.56 -2.00 16 22 C -0.13 -1.52 8.49 71.98 0.61 -0.91 16 23 C -0.10 -1.76 4.93 30.72 0.15 -1.61 16 24 C -0.08 -1.89 4.24 29.66 0.13 -1.76 16 25 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.04 1.59 7.84 -2.39 -0.02 1.57 16 27 H 0.05 2.12 5.64 -2.38 -0.01 2.11 16 28 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 29 H 0.04 2.00 3.21 -2.39 -0.01 1.99 16 30 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 31 H 0.40 15.09 6.92 -92.71 -0.64 14.45 16 32 H 0.07 1.45 7.93 -2.39 -0.02 1.43 16 33 H 0.06 2.04 7.06 -2.39 -0.02 2.02 16 34 H 0.05 1.85 6.85 -2.39 -0.02 1.83 16 35 H 0.09 1.36 8.11 -2.39 -0.02 1.34 16 36 H 0.10 1.41 8.11 -2.38 -0.02 1.39 16 37 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.04 0.93 5.68 -2.39 -0.01 0.92 16 40 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 41 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.07 1.16 8.12 -2.39 -0.02 1.14 16 45 H 0.07 1.67 7.48 -2.38 -0.02 1.66 16 46 H 0.07 1.80 6.92 -2.39 -0.02 1.79 16 Total: -1.00 -66.03 337.11 3.96 -62.07 By element: Atomic # 1 Polarization: 25.27 SS G_CDS: 0.23 Total: 25.51 kcal Atomic # 6 Polarization: -26.39 SS G_CDS: 4.02 Total: -22.37 kcal Atomic # 7 Polarization: -85.91 SS G_CDS: -1.92 Total: -87.83 kcal Atomic # 8 Polarization: -24.80 SS G_CDS: -0.04 Total: -24.84 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 1.67 Total: 47.47 kcal Total: -66.03 3.96 -62.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450622068.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.961 kcal (2) G-P(sol) polarization free energy of solvation -66.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds