Wall clock time and date at job start Tue Mar 31 2020 02:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47195 * 2 1 4 4 C 1.52997 * 109.47340 * 180.02562 * 3 2 1 5 5 H 1.08998 * 110.67490 * 56.77822 * 4 3 2 6 6 C 1.54894 * 110.75434 * 293.54417 * 4 3 2 7 7 C 1.54265 * 104.19719 * 203.74229 * 6 4 3 8 8 C 1.53877 * 106.59709 * 23.61187 * 7 6 4 9 9 C 1.54265 * 106.63860 * 359.97438 * 8 7 6 10 10 H 1.08998 * 110.48746 * 95.09538 * 9 8 7 11 11 C 1.50704 * 110.48558 * 217.73555 * 9 8 7 12 12 O 1.21283 * 120.00071 * 105.44464 * 11 9 8 13 13 N 1.34779 * 119.99684 * 285.45884 * 11 9 8 14 14 C 1.46504 * 119.99511 * 185.33895 * 13 11 9 15 15 C 1.53000 * 109.46776 * 185.19512 * 14 13 11 16 16 C 1.50698 * 115.55288 * 57.89609 * 15 14 13 17 17 H 1.08006 * 119.99660 * 264.47892 * 16 15 14 18 18 C 1.37879 * 120.00333 * 84.47680 * 16 15 14 19 19 N 1.31513 * 119.99777 * 1.92056 * 18 16 15 20 20 Si 1.86796 * 120.00096 * 181.91866 * 18 16 15 21 21 H 1.48501 * 109.47381 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.46917 * 119.99817 * 20 18 16 23 23 H 1.48490 * 109.47313 * 239.99895 * 20 18 16 24 24 C 1.53000 * 117.49581 * 272.22140 * 15 14 13 25 25 C 1.53006 * 117.49836 * 203.56368 * 15 14 13 26 26 H 1.08994 * 109.47049 * 59.99982 * 1 2 3 27 27 H 1.08999 * 109.46505 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46774 * 299.99907 * 1 2 3 29 29 H 1.09002 * 109.47086 * 240.00350 * 2 1 3 30 30 H 1.09003 * 109.47218 * 120.00014 * 2 1 3 31 31 H 1.09000 * 109.46938 * 59.99652 * 3 2 1 32 32 H 1.09003 * 109.47049 * 300.00118 * 3 2 1 33 33 H 1.09003 * 110.48233 * 85.06495 * 6 4 3 34 34 H 1.08998 * 110.59732 * 322.48035 * 6 4 3 35 35 H 1.08991 * 110.03185 * 264.32483 * 7 6 4 36 36 H 1.08998 * 110.03022 * 142.89328 * 7 6 4 37 37 H 1.09001 * 110.02770 * 119.28228 * 8 7 6 38 38 H 1.08994 * 110.03271 * 240.66568 * 8 7 6 39 39 H 0.97001 * 120.00102 * 5.32987 * 13 11 9 40 40 H 1.09001 * 109.47112 * 305.19105 * 14 13 11 41 41 H 1.08997 * 109.47647 * 65.19357 * 14 13 11 42 42 H 0.96993 * 119.99756 * 185.01371 * 19 18 16 43 43 H 1.08996 * 117.50153 * 0.02562 * 24 15 14 44 44 H 1.09005 * 117.49774 * 145.02194 * 24 15 14 45 45 H 1.08994 * 117.50031 * 214.97934 * 25 15 14 46 46 H 1.08998 * 117.49267 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9545 0.8840 -0.8540 6 6 4.1195 0.8638 1.3269 7 6 5.5337 1.4683 1.4465 8 6 5.5334 2.7572 0.6060 9 6 4.1194 2.8915 0.0039 10 1 3.4981 3.5330 0.6288 11 6 4.1935 3.4330 -1.4005 12 8 4.0083 2.6955 -2.3454 13 7 4.4657 4.7368 -1.6065 14 6 4.4226 5.2887 -2.9630 15 6 4.8935 6.7442 -2.9366 16 6 6.2786 6.9694 -2.3872 17 1 6.4107 7.2380 -1.3495 18 6 7.3770 6.8326 -3.2092 19 7 7.2141 6.5426 -4.4816 20 14 9.0966 7.0591 -2.5157 21 1 9.0085 7.3771 -1.0678 22 1 9.8738 5.8074 -2.7007 23 1 9.7745 8.1724 -3.2270 24 6 3.8420 7.8220 -2.6654 25 6 4.4261 7.6585 -4.0709 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.6767 1.9564 -0.8900 33 1 4.1725 -0.2237 1.2758 34 1 3.4990 1.1755 2.1670 35 1 6.2730 0.7686 1.0569 36 1 5.7529 1.7020 2.4883 37 1 5.7524 3.6164 1.2400 38 1 6.2731 2.6834 -0.1911 39 1 4.6901 5.3098 -0.8567 40 1 5.0765 4.7070 -3.6128 41 1 3.4013 5.2440 -3.3412 42 1 7.9866 6.3747 -5.0435 43 1 2.8149 7.4941 -2.5054 44 1 4.1521 8.6942 -2.0899 45 1 5.1203 8.4232 -4.4194 46 1 3.7836 7.2230 -4.8360 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451386551.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:17 Heat of formation + Delta-G solvation = -56.286333 kcal Electronic energy + Delta-G solvation = -22501.842317 eV Core-core repulsion = 19390.304833 eV Total energy + Delta-G solvation = -3111.537484 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.77566 -37.59723 -36.46436 -34.48336 -33.19080 -31.96883 -29.74107 -29.30925 -26.18359 -25.30654 -24.86378 -21.70286 -21.29707 -20.97765 -19.82607 -19.50343 -18.93187 -16.93818 -16.05192 -15.32581 -15.24409 -14.98446 -14.68851 -14.29461 -14.13531 -13.72314 -13.38928 -13.21271 -12.93297 -12.69759 -12.51112 -12.16083 -11.89523 -11.59387 -11.46622 -11.34926 -11.15003 -11.00269 -10.91939 -10.81003 -10.54011 -10.51344 -10.45389 -10.32235 -10.28664 -10.23488 -9.57344 -9.12558 -9.02936 -8.48271 -8.27476 -7.99070 -6.08270 -4.17204 3.24488 3.28758 3.33618 3.35057 3.94842 4.35446 4.51562 4.67935 4.82530 5.02574 5.07363 5.19498 5.21057 5.30941 5.42993 5.47610 5.53920 5.60888 5.63800 5.69517 5.72174 5.83868 5.87638 5.92970 5.97434 6.04521 6.07265 6.12917 6.20552 6.29464 6.33170 6.36590 6.43120 6.49544 6.53913 6.60079 6.70204 6.91016 7.11222 7.34686 7.41428 7.52913 7.80665 8.33503 8.38782 8.84140 8.97708 9.50124 10.99997 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.019355 B = 0.004540 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.271848 B = 6165.672570 C = 7100.388502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.110 4.110 4 C -0.073 4.073 5 H 0.091 0.909 6 C -0.119 4.119 7 C -0.122 4.122 8 C -0.114 4.114 9 C -0.110 4.110 10 H 0.092 0.908 11 C 0.511 3.489 12 O -0.556 6.556 13 N -0.702 5.702 14 C 0.163 3.837 15 C 0.026 3.974 16 C -0.497 4.497 17 H 0.060 0.940 18 C 0.074 3.926 19 N -0.874 5.874 20 Si 0.888 3.112 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.284 1.284 24 C -0.212 4.212 25 C -0.145 4.145 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.400 0.600 40 H 0.070 0.930 41 H 0.033 0.967 42 H 0.261 0.739 43 H 0.064 0.936 44 H 0.077 0.923 45 H 0.085 0.915 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.900 -9.153 11.586 16.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.147 4.147 4 C -0.092 4.092 5 H 0.109 0.891 6 C -0.156 4.156 7 C -0.160 4.160 8 C -0.152 4.152 9 C -0.131 4.131 10 H 0.111 0.889 11 C 0.296 3.704 12 O -0.436 6.436 13 N -0.350 5.350 14 C 0.040 3.960 15 C 0.025 3.975 16 C -0.534 4.534 17 H 0.078 0.922 18 C -0.130 4.130 19 N -0.510 5.510 20 Si 0.716 3.284 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.249 4.249 25 C -0.183 4.183 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.234 0.766 40 H 0.088 0.912 41 H 0.051 0.949 42 H 0.070 0.930 43 H 0.083 0.917 44 H 0.096 0.904 45 H 0.104 0.896 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.937 -9.617 10.696 16.428 hybrid contribution 1.172 0.515 0.513 1.379 sum -6.764 -9.102 11.209 15.945 Atomic orbital electron populations 1.21779 0.96273 1.01203 1.01718 1.21512 0.95418 0.97169 1.01885 1.21578 0.94610 0.96653 1.01881 1.22021 0.94880 0.94048 0.98207 0.89120 1.22432 0.95941 0.99873 0.97372 1.22108 0.97380 0.96835 0.99677 1.22074 0.95523 0.98195 0.99423 1.22219 0.98425 0.98034 0.94444 0.88940 1.20401 0.76921 0.82357 0.90727 1.90633 1.51211 1.57630 1.44078 1.45946 1.68522 1.09226 1.11281 1.20929 0.97714 0.95392 0.82007 1.19052 0.92929 0.86280 0.99255 1.20363 0.88587 1.48650 0.95843 0.92217 1.24973 0.98921 0.94588 0.94531 1.69998 1.30206 1.46161 1.04658 0.86607 0.84779 0.77801 0.79255 1.19695 1.20976 1.21018 1.23042 0.97085 1.03462 1.01349 1.22466 1.01829 1.04165 0.89866 0.92755 0.93096 0.92976 0.91996 0.92181 0.92353 0.91675 0.91739 0.91691 0.91841 0.91876 0.91070 0.91083 0.76636 0.91162 0.94869 0.92951 0.91728 0.90424 0.89643 0.91825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.91 37.16 0.37 -1.04 16 2 C -0.12 -1.26 5.78 -26.73 -0.15 -1.41 16 3 C -0.11 -1.30 4.72 -26.73 -0.13 -1.42 16 4 C -0.07 -0.94 2.06 -88.59 -0.18 -1.12 16 5 H 0.09 1.39 7.34 -51.93 -0.38 1.01 16 6 C -0.12 -1.23 5.47 -25.07 -0.14 -1.37 16 7 C -0.12 -1.32 6.80 -25.61 -0.17 -1.50 16 8 C -0.11 -1.49 6.36 -25.61 -0.16 -1.65 16 9 C -0.11 -1.54 2.71 -90.07 -0.24 -1.78 16 10 H 0.09 1.14 8.05 -51.93 -0.42 0.72 16 11 C 0.51 9.56 6.96 -10.98 -0.08 9.49 16 12 O -0.56 -12.41 15.66 5.56 0.09 -12.33 16 13 N -0.70 -13.72 5.37 -60.29 -0.32 -14.05 16 14 C 0.16 3.71 5.57 -4.04 -0.02 3.69 16 15 C 0.03 0.60 1.50 -155.66 -0.23 0.37 16 16 C -0.50 -12.73 8.38 -34.44 -0.29 -13.02 16 17 H 0.06 1.50 7.81 -52.48 -0.41 1.09 16 18 C 0.07 1.96 5.43 -17.82 -0.10 1.86 16 19 N -0.87 -24.37 12.73 55.43 0.71 -23.67 16 20 Si 0.89 20.58 29.54 -169.99 -5.02 15.56 16 21 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 C -0.21 -4.41 9.94 -26.69 -0.27 -4.68 16 25 C -0.15 -3.34 9.27 -26.69 -0.25 -3.59 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.55 7.41 -51.93 -0.38 0.17 16 31 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.06 0.61 8.02 -51.93 -0.42 0.20 16 34 H 0.06 0.61 8.02 -51.93 -0.42 0.19 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.07 1.08 7.83 -51.93 -0.41 0.67 16 39 H 0.40 7.19 8.25 -40.82 -0.34 6.86 16 40 H 0.07 1.85 8.09 -51.93 -0.42 1.43 16 41 H 0.03 0.74 8.11 -51.93 -0.42 0.31 16 42 H 0.26 7.00 8.32 -40.82 -0.34 6.66 16 43 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 44 H 0.08 1.59 8.14 -51.93 -0.42 1.16 16 45 H 0.09 2.10 8.14 -51.93 -0.42 1.68 16 46 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 368.53 15.07 5.55 5.55 Total: -1.00 -28.77 368.53 -9.68 -38.46 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -8.64 Total: 7.64 kcal Atomic # 6 Polarization: -15.12 SS G_CDS: -2.04 Total: -17.17 kcal Atomic # 7 Polarization: -38.10 SS G_CDS: 0.38 Total: -37.71 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: 0.09 Total: -12.33 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -28.77 -9.68 -38.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451386551.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.831 kcal (2) G-P(sol) polarization free energy of solvation -28.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds