Wall clock time and date at job start Tue Mar 31 2020 02:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47195 * 2 1 4 4 C 1.52997 * 109.47340 * 180.02562 * 3 2 1 5 5 H 1.08998 * 110.67490 * 56.77822 * 4 3 2 6 6 C 1.54894 * 110.75434 * 293.54417 * 4 3 2 7 7 C 1.54265 * 104.19719 * 203.74229 * 6 4 3 8 8 C 1.53877 * 106.59709 * 23.61187 * 7 6 4 9 9 C 1.54265 * 106.63860 * 359.97438 * 8 7 6 10 10 H 1.08998 * 110.48746 * 95.09538 * 9 8 7 11 11 C 1.50704 * 110.48558 * 217.73555 * 9 8 7 12 12 O 1.21283 * 120.00071 * 105.44464 * 11 9 8 13 13 N 1.34779 * 119.99684 * 285.45884 * 11 9 8 14 14 C 1.46504 * 119.99511 * 185.33895 * 13 11 9 15 15 C 1.53000 * 109.46776 * 185.19512 * 14 13 11 16 16 C 1.50698 * 115.55288 * 57.89609 * 15 14 13 17 17 H 1.08006 * 119.99660 * 264.47892 * 16 15 14 18 18 C 1.37879 * 120.00333 * 84.47680 * 16 15 14 19 19 N 1.31513 * 119.99777 * 1.92056 * 18 16 15 20 20 Si 1.86796 * 120.00096 * 181.91866 * 18 16 15 21 21 H 1.48501 * 109.47381 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.46917 * 119.99817 * 20 18 16 23 23 H 1.48490 * 109.47313 * 239.99895 * 20 18 16 24 24 C 1.53000 * 117.49581 * 272.22140 * 15 14 13 25 25 C 1.53006 * 117.49836 * 203.56368 * 15 14 13 26 26 H 1.08994 * 109.47049 * 59.99982 * 1 2 3 27 27 H 1.08999 * 109.46505 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46774 * 299.99907 * 1 2 3 29 29 H 1.09002 * 109.47086 * 240.00350 * 2 1 3 30 30 H 1.09003 * 109.47218 * 120.00014 * 2 1 3 31 31 H 1.09000 * 109.46938 * 59.99652 * 3 2 1 32 32 H 1.09003 * 109.47049 * 300.00118 * 3 2 1 33 33 H 1.09003 * 110.48233 * 85.06495 * 6 4 3 34 34 H 1.08998 * 110.59732 * 322.48035 * 6 4 3 35 35 H 1.08991 * 110.03185 * 264.32483 * 7 6 4 36 36 H 1.08998 * 110.03022 * 142.89328 * 7 6 4 37 37 H 1.09001 * 110.02770 * 119.28228 * 8 7 6 38 38 H 1.08994 * 110.03271 * 240.66568 * 8 7 6 39 39 H 0.97001 * 120.00102 * 5.32987 * 13 11 9 40 40 H 1.09001 * 109.47112 * 305.19105 * 14 13 11 41 41 H 1.08997 * 109.47647 * 65.19357 * 14 13 11 42 42 H 0.96993 * 119.99756 * 185.01371 * 19 18 16 43 43 H 1.08996 * 117.50153 * 0.02562 * 24 15 14 44 44 H 1.09005 * 117.49774 * 145.02194 * 24 15 14 45 45 H 1.08994 * 117.50031 * 214.97934 * 25 15 14 46 46 H 1.08998 * 117.49267 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9545 0.8840 -0.8540 6 6 4.1195 0.8638 1.3269 7 6 5.5337 1.4683 1.4465 8 6 5.5334 2.7572 0.6060 9 6 4.1194 2.8915 0.0039 10 1 3.4981 3.5330 0.6288 11 6 4.1935 3.4330 -1.4005 12 8 4.0083 2.6955 -2.3454 13 7 4.4657 4.7368 -1.6065 14 6 4.4226 5.2887 -2.9630 15 6 4.8935 6.7442 -2.9366 16 6 6.2786 6.9694 -2.3872 17 1 6.4107 7.2380 -1.3495 18 6 7.3770 6.8326 -3.2092 19 7 7.2141 6.5426 -4.4816 20 14 9.0966 7.0591 -2.5157 21 1 9.0085 7.3771 -1.0678 22 1 9.8738 5.8074 -2.7007 23 1 9.7745 8.1724 -3.2270 24 6 3.8420 7.8220 -2.6654 25 6 4.4261 7.6585 -4.0709 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.6767 1.9564 -0.8900 33 1 4.1725 -0.2237 1.2758 34 1 3.4990 1.1755 2.1670 35 1 6.2730 0.7686 1.0569 36 1 5.7529 1.7020 2.4883 37 1 5.7524 3.6164 1.2400 38 1 6.2731 2.6834 -0.1911 39 1 4.6901 5.3098 -0.8567 40 1 5.0765 4.7070 -3.6128 41 1 3.4013 5.2440 -3.3412 42 1 7.9866 6.3747 -5.0435 43 1 2.8149 7.4941 -2.5054 44 1 4.1521 8.6942 -2.0899 45 1 5.1203 8.4232 -4.4194 46 1 3.7836 7.2230 -4.8360 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451386551.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:17 Heat of formation + Delta-G solvation = -71.157428 kcal Electronic energy + Delta-G solvation = -22502.487176 eV Core-core repulsion = 19390.304833 eV Total energy + Delta-G solvation = -3112.182343 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.13940 -39.00799 -38.10727 -35.39901 -34.84533 -33.97420 -30.69553 -30.41293 -27.95647 -27.00457 -25.95657 -23.02002 -22.60239 -22.27217 -21.31664 -20.76475 -20.37622 -18.46912 -17.78766 -16.77266 -16.64899 -16.36697 -16.02945 -15.74525 -15.64151 -14.88211 -14.72341 -14.58724 -14.23690 -13.84976 -13.78042 -13.51935 -13.32148 -13.12055 -12.90603 -12.88130 -12.56924 -12.34808 -12.23572 -12.03918 -12.02541 -11.68981 -11.54363 -11.44032 -11.34668 -11.24936 -11.17941 -10.97665 -10.70844 -10.42776 -10.06586 -9.76186 -8.11362 -6.24511 1.39400 1.42863 1.52010 1.77855 2.39406 2.46482 3.18220 3.47199 3.52382 3.68973 3.82083 4.14483 4.19650 4.24963 4.30601 4.43450 4.50243 4.53038 4.56208 4.62394 4.65884 4.66779 4.70505 4.79714 4.81565 4.98264 4.99375 5.01484 5.04226 5.09139 5.13020 5.23901 5.26049 5.27105 5.31523 5.39063 5.48593 5.53219 5.55408 5.60271 5.63342 5.72981 5.77260 6.35486 6.81148 6.85514 7.43986 7.46030 8.96810 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.019355 B = 0.004540 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.271848 B = 6165.672570 C = 7100.388502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.106 4.106 4 C -0.074 4.074 5 H 0.056 0.944 6 C -0.108 4.108 7 C -0.119 4.119 8 C -0.115 4.115 9 C -0.103 4.103 10 H 0.121 0.879 11 C 0.506 3.494 12 O -0.599 6.599 13 N -0.698 5.698 14 C 0.178 3.822 15 C 0.003 3.997 16 C -0.498 4.498 17 H 0.065 0.935 18 C 0.023 3.977 19 N -0.909 5.909 20 Si 0.947 3.053 21 H -0.257 1.257 22 H -0.290 1.290 23 H -0.285 1.285 24 C -0.176 4.176 25 C -0.158 4.158 26 H 0.042 0.958 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.045 0.955 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.035 0.965 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.058 0.942 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.039 0.961 39 H 0.409 0.591 40 H 0.023 0.977 41 H 0.036 0.964 42 H 0.257 0.743 43 H 0.090 0.910 44 H 0.086 0.914 45 H 0.063 0.937 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.648 -9.231 15.089 19.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.143 4.143 4 C -0.093 4.093 5 H 0.075 0.925 6 C -0.146 4.146 7 C -0.156 4.156 8 C -0.153 4.153 9 C -0.124 4.124 10 H 0.138 0.862 11 C 0.294 3.706 12 O -0.480 6.480 13 N -0.347 5.347 14 C 0.054 3.946 15 C 0.002 3.998 16 C -0.536 4.536 17 H 0.083 0.917 18 C -0.177 4.177 19 N -0.547 5.547 20 Si 0.773 3.227 21 H -0.181 1.181 22 H -0.216 1.216 23 H -0.211 1.211 24 C -0.213 4.213 25 C -0.196 4.196 26 H 0.061 0.939 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.064 0.936 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.053 0.947 33 H 0.093 0.907 34 H 0.106 0.894 35 H 0.077 0.923 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.058 0.942 39 H 0.245 0.755 40 H 0.041 0.959 41 H 0.054 0.946 42 H 0.066 0.934 43 H 0.108 0.892 44 H 0.105 0.895 45 H 0.082 0.918 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.687 -9.680 14.240 19.286 hybrid contribution 1.377 0.538 -0.625 1.605 sum -7.310 -9.142 13.615 17.955 Atomic orbital electron populations 1.21771 0.95377 1.01975 1.01729 1.21497 0.96201 0.96096 1.01985 1.21548 0.93764 0.97630 1.01380 1.22003 0.95641 0.92964 0.98712 0.92545 1.22405 0.95632 1.00424 0.96118 1.22113 0.97683 0.95351 1.00483 1.22111 0.93700 1.00456 0.99023 1.22306 0.99924 0.98970 0.91214 0.86155 1.21334 0.75255 0.81532 0.92492 1.90613 1.52827 1.58496 1.46102 1.45876 1.68735 1.09879 1.10214 1.20516 0.96520 0.94541 0.83067 1.19087 0.93361 0.86998 1.00343 1.20683 0.89612 1.47346 0.95952 0.91680 1.25708 1.02473 0.94750 0.94798 1.70129 1.30809 1.47893 1.05893 0.85673 0.80557 0.77151 0.79301 1.18117 1.21602 1.21147 1.23033 0.97439 1.01974 0.98844 1.22388 1.02209 1.03890 0.91133 0.93922 0.91986 0.91786 0.93631 0.90334 0.90229 0.94652 0.90669 0.89378 0.92269 0.89387 0.89325 0.94239 0.75474 0.95899 0.94610 0.93400 0.89189 0.89545 0.91846 0.91375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 9.91 71.98 0.71 -1.82 16 2 C -0.12 -2.29 5.78 30.60 0.18 -2.12 16 3 C -0.11 -2.35 4.72 30.59 0.14 -2.21 16 4 C -0.07 -1.83 2.06 -9.48 -0.02 -1.85 16 5 H 0.06 1.78 7.34 -2.39 -0.02 1.77 16 6 C -0.11 -1.89 5.47 31.67 0.17 -1.72 16 7 C -0.12 -2.22 6.80 31.32 0.21 -2.01 16 8 C -0.11 -2.80 6.36 31.32 0.20 -2.60 16 9 C -0.10 -2.75 2.71 -10.44 -0.03 -2.78 16 10 H 0.12 2.58 8.05 -2.39 -0.02 2.56 16 11 C 0.51 19.24 6.96 87.66 0.61 19.85 16 12 O -0.60 -28.00 15.66 -3.04 -0.05 -28.05 16 13 N -0.70 -27.39 5.37 -463.04 -2.49 -29.87 16 14 C 0.18 8.32 5.57 86.38 0.48 8.80 16 15 C 0.00 0.13 1.50 -52.93 -0.08 0.05 16 16 C -0.50 -25.44 8.38 25.60 0.21 -25.22 16 17 H 0.07 3.19 7.81 -2.91 -0.02 3.16 16 18 C 0.02 1.23 5.43 84.66 0.46 1.69 16 19 N -0.91 -52.28 12.73 21.45 0.27 -52.00 16 20 Si 0.95 42.50 29.54 68.60 2.03 44.52 16 21 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 22 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 23 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 24 C -0.18 -6.99 9.94 30.62 0.30 -6.69 16 25 C -0.16 -7.31 9.27 30.62 0.28 -7.03 16 26 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.08 1.22 7.41 -2.39 -0.02 1.20 16 31 H 0.08 1.43 8.10 -2.39 -0.02 1.41 16 32 H 0.03 0.98 8.14 -2.39 -0.02 0.97 16 33 H 0.07 1.19 8.02 -2.39 -0.02 1.17 16 34 H 0.09 1.19 8.02 -2.39 -0.02 1.17 16 35 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.04 1.20 7.83 -2.39 -0.02 1.18 16 39 H 0.41 14.29 8.25 -92.71 -0.76 13.53 16 40 H 0.02 1.27 8.09 -2.39 -0.02 1.25 16 41 H 0.04 1.62 8.11 -2.39 -0.02 1.60 16 42 H 0.26 14.30 8.32 -92.71 -0.77 13.53 16 43 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 44 H 0.09 3.30 8.14 -2.38 -0.02 3.28 16 45 H 0.06 3.19 8.14 -2.39 -0.02 3.17 16 46 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 Total: -1.00 -64.65 368.53 3.77 -60.88 By element: Atomic # 1 Polarization: 30.02 SS G_CDS: 0.16 Total: 30.18 kcal Atomic # 6 Polarization: -29.50 SS G_CDS: 3.85 Total: -25.65 kcal Atomic # 7 Polarization: -79.66 SS G_CDS: -2.22 Total: -81.88 kcal Atomic # 8 Polarization: -28.00 SS G_CDS: -0.05 Total: -28.05 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.52 kcal Total: -64.65 3.77 -60.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451386551.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.281 kcal (2) G-P(sol) polarization free energy of solvation -64.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds