Wall clock time and date at job start Tue Mar 31 2020 02:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47076 * 2 1 4 4 C 1.53003 * 109.47137 * 179.97438 * 3 2 1 5 5 H 1.09007 * 110.05433 * 54.42684 * 4 3 2 6 6 C 1.54261 * 110.03468 * 293.01660 * 4 3 2 7 7 C 1.54893 * 104.19802 * 217.10545 * 6 4 3 8 8 C 1.54963 * 102.77490 * 37.91115 * 7 6 4 9 9 C 1.53869 * 110.03573 * 175.84410 * 4 3 2 10 10 H 1.08996 * 110.03560 * 238.62041 * 9 4 3 11 11 C 1.50705 * 110.03170 * 0.02562 * 9 4 3 12 12 O 1.21281 * 119.99877 * 92.43208 * 11 9 4 13 13 N 1.34774 * 119.99866 * 272.44060 * 11 9 4 14 14 C 1.46498 * 119.99938 * 185.28961 * 13 11 9 15 15 C 1.53004 * 109.47211 * 184.69970 * 14 13 11 16 16 C 1.50697 * 115.54971 * 304.10717 * 15 14 13 17 17 H 1.08004 * 119.99725 * 95.24436 * 16 15 14 18 18 C 1.37875 * 120.00124 * 275.25720 * 16 15 14 19 19 N 1.31514 * 120.00377 * 5.41687 * 18 16 15 20 20 Si 1.86805 * 119.99750 * 185.42996 * 18 16 15 21 21 H 1.48502 * 109.46744 * 269.98967 * 20 18 16 22 22 H 1.48492 * 109.47454 * 29.99462 * 20 18 16 23 23 H 1.48504 * 109.46926 * 149.99612 * 20 18 16 24 24 C 1.52999 * 117.49796 * 89.78101 * 15 14 13 25 25 C 1.52999 * 117.49787 * 158.43777 * 15 14 13 26 26 H 1.08997 * 109.47134 * 300.00205 * 1 2 3 27 27 H 1.09005 * 109.46664 * 60.00488 * 1 2 3 28 28 H 1.09004 * 109.47144 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47349 * 239.99419 * 2 1 3 30 30 H 1.09005 * 109.46664 * 119.99512 * 2 1 3 31 31 H 1.08997 * 109.47307 * 59.99901 * 3 2 1 32 32 H 1.08994 * 109.47336 * 299.99577 * 3 2 1 33 33 H 1.09000 * 110.48802 * 335.78041 * 6 4 3 34 34 H 1.09000 * 110.49245 * 98.41980 * 6 4 3 35 35 H 1.08997 * 110.75878 * 156.25574 * 7 6 4 36 36 H 1.09005 * 110.75009 * 279.43987 * 7 6 4 37 37 H 1.09007 * 110.52748 * 203.43707 * 8 7 6 38 38 H 1.08997 * 110.47620 * 80.76885 * 8 7 6 39 39 H 0.96995 * 120.00024 * 5.28426 * 13 11 9 40 40 H 1.08996 * 109.47722 * 64.69471 * 14 13 11 41 41 H 1.09002 * 109.47323 * 304.69754 * 14 13 11 42 42 H 0.96997 * 120.00689 * 174.99557 * 19 18 16 43 43 H 1.09004 * 117.49357 * 215.00328 * 24 15 14 44 44 H 1.08994 * 117.50150 * 0.02562 * 24 15 14 45 45 H 1.08996 * 117.50077 * 359.97438 * 25 15 14 46 46 H 1.09006 * 117.49575 * 144.96945 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9442 0.8467 -0.8320 6 6 4.0979 0.8761 1.3348 7 6 5.3531 1.7308 1.6403 8 6 4.9277 3.1446 1.1696 9 6 4.0972 2.8843 -0.1041 10 1 4.7264 2.9885 -0.9880 11 6 2.9439 3.8518 -0.1744 12 8 2.5085 4.3512 0.8415 13 7 2.3962 4.1620 -1.3662 14 6 1.3538 5.1881 -1.4484 15 6 0.8242 5.2632 -2.8819 16 6 1.8615 5.5148 -3.9457 17 1 2.2979 4.6847 -4.4814 18 6 2.2536 6.8046 -4.2350 19 7 1.8032 7.8066 -3.5120 20 14 3.4243 7.1288 -5.6541 21 1 4.8245 7.0782 -5.1620 22 1 3.2301 6.0949 -6.7021 23 1 3.1489 8.4713 -6.2261 24 6 -0.3577 4.3626 -3.2464 25 6 -0.5641 5.8713 -3.0910 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6767 1.9563 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 3.3535 0.9968 2.1218 34 1 4.3692 -0.1737 1.2230 35 1 5.5715 1.7284 2.7082 36 1 6.2114 1.3736 1.0712 37 1 5.8041 3.7495 0.9365 38 1 4.3176 3.6321 1.9299 39 1 2.6923 3.7059 -2.1694 40 1 1.7714 6.1539 -1.1643 41 1 0.5378 4.9321 -0.7726 42 1 2.1344 8.7048 -3.6682 43 1 -0.3849 3.9520 -4.2558 44 1 -0.7582 3.7168 -2.4651 45 1 -1.1003 6.2174 -2.2075 46 1 -0.7270 6.4537 -3.9980 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451386553.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:20 Heat of formation + Delta-G solvation = -65.698620 kcal Electronic energy + Delta-G solvation = -23029.929393 eV Core-core repulsion = 19917.983761 eV Total energy + Delta-G solvation = -3111.945632 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.39004 -38.94134 -38.03376 -35.35301 -34.83171 -33.98856 -30.85143 -30.21767 -27.95775 -27.02975 -25.92097 -23.02043 -22.56902 -22.34915 -21.39250 -21.24230 -19.90085 -18.16170 -17.68970 -16.95933 -16.71355 -16.49865 -16.06355 -15.83517 -15.46171 -15.09045 -14.72094 -14.47625 -14.24648 -13.93237 -13.66838 -13.50794 -13.29288 -12.92637 -12.85153 -12.83863 -12.57469 -12.34749 -12.20167 -12.05464 -11.90799 -11.71863 -11.63658 -11.50644 -11.41054 -11.28931 -11.25526 -10.87222 -10.68298 -10.46185 -10.03686 -9.73373 -8.10230 -6.24176 1.42118 1.45290 1.53456 1.80842 2.40582 2.48709 3.18424 3.46337 3.57798 3.67056 3.78296 4.09577 4.18037 4.23984 4.35779 4.40733 4.51684 4.53378 4.58810 4.65071 4.65717 4.69319 4.72588 4.76302 4.81411 4.96889 4.97426 5.02911 5.04735 5.08555 5.11279 5.23805 5.24641 5.27056 5.29416 5.37297 5.47863 5.50764 5.53431 5.58920 5.60052 5.73461 5.77912 6.36272 6.81663 6.87994 7.45098 7.47062 8.97542 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.016797 B = 0.005337 C = 0.004600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.547264 B = 5245.186076 C = 6085.006452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.113 4.113 3 C -0.124 4.124 4 C -0.072 4.072 5 H 0.102 0.898 6 C -0.113 4.113 7 C -0.114 4.114 8 C -0.117 4.117 9 C -0.111 4.111 10 H 0.105 0.895 11 C 0.516 3.484 12 O -0.599 6.599 13 N -0.699 5.699 14 C 0.182 3.818 15 C 0.008 3.992 16 C -0.503 4.503 17 H 0.066 0.934 18 C 0.026 3.974 19 N -0.909 5.909 20 Si 0.950 3.050 21 H -0.277 1.277 22 H -0.263 1.263 23 H -0.292 1.292 24 C -0.177 4.177 25 C -0.161 4.161 26 H 0.041 0.959 27 H 0.044 0.956 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.038 0.962 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.091 0.909 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.070 0.930 38 H 0.056 0.944 39 H 0.408 0.592 40 H 0.024 0.976 41 H 0.031 0.969 42 H 0.258 0.742 43 H 0.086 0.914 44 H 0.084 0.916 45 H 0.067 0.933 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.110 -16.543 5.682 18.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.150 4.150 3 C -0.162 4.162 4 C -0.091 4.091 5 H 0.120 0.880 6 C -0.150 4.150 7 C -0.151 4.151 8 C -0.155 4.155 9 C -0.132 4.132 10 H 0.124 0.876 11 C 0.304 3.696 12 O -0.481 6.481 13 N -0.348 5.348 14 C 0.057 3.943 15 C 0.007 3.993 16 C -0.541 4.541 17 H 0.084 0.916 18 C -0.175 4.175 19 N -0.547 5.547 20 Si 0.776 3.224 21 H -0.203 1.203 22 H -0.187 1.187 23 H -0.218 1.218 24 C -0.214 4.214 25 C -0.199 4.199 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.109 0.891 35 H 0.093 0.907 36 H 0.105 0.895 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.244 0.756 40 H 0.042 0.958 41 H 0.049 0.951 42 H 0.067 0.933 43 H 0.105 0.895 44 H 0.102 0.898 45 H 0.085 0.915 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.751 -15.954 6.337 17.812 hybrid contribution 0.235 1.184 -1.007 1.572 sum 4.986 -14.770 5.330 16.475 Atomic orbital electron populations 1.21788 0.96419 1.01941 1.01047 1.21472 0.95456 0.95270 1.02846 1.21881 0.95337 0.98060 1.00931 1.21759 0.94642 0.92348 1.00305 0.87969 1.22434 0.96951 1.00133 0.95496 1.22478 0.98088 0.92927 1.01624 1.22373 0.98515 0.99085 0.95503 1.22168 0.94341 0.94867 1.01860 0.87640 1.21092 0.84296 0.81612 0.82584 1.90592 1.64927 1.56649 1.35972 1.45945 1.39561 1.39698 1.09574 1.20444 0.88724 0.89076 0.96022 1.19074 0.88135 1.00065 0.91994 1.20627 1.22732 0.92114 1.18592 0.91599 1.25708 0.97478 0.96162 0.98119 1.70110 1.43425 1.00139 1.40984 0.85679 0.79170 0.77332 0.80223 1.20313 1.18699 1.21785 1.23000 1.04848 0.92143 1.01409 1.22416 1.02026 0.94981 1.00525 0.93958 0.93667 0.91279 0.90763 0.90935 0.94362 0.92868 0.92677 0.89067 0.90730 0.89531 0.91106 0.92559 0.75575 0.95766 0.95092 0.93252 0.89521 0.89765 0.91464 0.91731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.24 9.91 71.98 0.71 -2.52 16 2 C -0.11 -2.25 5.78 30.59 0.18 -2.07 16 3 C -0.12 -3.21 3.39 30.59 0.10 -3.11 16 4 C -0.07 -1.57 2.94 -10.07 -0.03 -1.60 16 5 H 0.10 1.78 8.14 -2.38 -0.02 1.76 16 6 C -0.11 -2.08 5.49 31.67 0.17 -1.90 16 7 C -0.11 -2.07 6.91 31.91 0.22 -1.85 16 8 C -0.12 -3.01 6.31 31.69 0.20 -2.81 16 9 C -0.11 -3.04 3.30 -10.82 -0.04 -3.07 16 10 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 11 C 0.52 19.47 4.78 87.66 0.42 19.89 16 12 O -0.60 -27.43 15.20 -3.03 -0.05 -27.47 16 13 N -0.70 -27.58 4.49 -463.06 -2.08 -29.66 16 14 C 0.18 8.52 5.58 86.38 0.48 9.00 16 15 C 0.01 0.38 1.52 -52.93 -0.08 0.30 16 16 C -0.50 -25.33 8.14 25.60 0.21 -25.12 16 17 H 0.07 3.17 7.82 -2.91 -0.02 3.15 16 18 C 0.03 1.37 5.40 84.65 0.46 1.83 16 19 N -0.91 -51.42 12.91 21.45 0.28 -51.14 16 20 Si 0.95 41.62 29.54 68.60 2.03 43.65 16 21 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 22 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 23 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 24 C -0.18 -7.17 9.93 30.62 0.30 -6.87 16 25 C -0.16 -7.47 9.46 30.62 0.29 -7.18 16 26 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.04 1.03 8.14 -2.38 -0.02 1.01 16 28 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 29 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.07 1.26 7.48 -2.38 -0.02 1.24 16 31 H 0.04 1.22 7.32 -2.39 -0.02 1.20 16 32 H 0.05 1.57 6.59 -2.39 -0.02 1.56 16 33 H 0.05 1.17 7.77 -2.39 -0.02 1.15 16 34 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 37 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 38 H 0.06 1.80 6.81 -2.39 -0.02 1.78 16 39 H 0.41 14.76 8.00 -92.71 -0.74 14.02 16 40 H 0.02 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.03 1.45 8.06 -2.39 -0.02 1.43 16 42 H 0.26 14.14 8.32 -92.71 -0.77 13.37 16 43 H 0.09 3.37 8.14 -2.39 -0.02 3.35 16 44 H 0.08 3.09 8.14 -2.39 -0.02 3.08 16 45 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 46 H 0.06 3.20 8.14 -2.38 -0.02 3.18 16 Total: -1.00 -62.66 362.59 3.97 -58.69 By element: Atomic # 1 Polarization: 32.86 SS G_CDS: 0.19 Total: 33.05 kcal Atomic # 6 Polarization: -30.71 SS G_CDS: 3.60 Total: -27.10 kcal Atomic # 7 Polarization: -79.01 SS G_CDS: -1.80 Total: -80.81 kcal Atomic # 8 Polarization: -27.43 SS G_CDS: -0.05 Total: -27.47 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal Total: -62.66 3.97 -58.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451386553.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.011 kcal (2) G-P(sol) polarization free energy of solvation -62.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds