Wall clock time and date at job start Tue Mar 31 2020 02:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52993 * 109.46771 * 2 1 4 4 C 1.53000 * 109.47073 * 180.02562 * 3 2 1 5 5 H 1.08995 * 110.01868 * 304.62946 * 4 3 2 6 6 C 1.54267 * 110.07340 * 66.04712 * 4 3 2 7 7 C 1.54893 * 104.19520 * 142.91864 * 6 4 3 8 8 C 1.54888 * 102.74865 * 322.05554 * 7 6 4 9 9 C 1.53879 * 110.03541 * 183.23810 * 4 3 2 10 10 H 1.09001 * 110.03264 * 121.33479 * 9 4 3 11 11 C 1.50702 * 110.02715 * 359.95256 * 9 4 3 12 12 O 1.21283 * 119.99883 * 274.17118 * 11 9 4 13 13 N 1.34778 * 120.00028 * 94.18414 * 11 9 4 14 14 C 1.46496 * 120.00056 * 185.10438 * 13 11 9 15 15 C 1.53001 * 109.47334 * 175.70681 * 14 13 11 16 16 C 1.50692 * 115.55177 * 294.54552 * 15 14 13 17 17 H 1.08002 * 120.00428 * 274.18942 * 16 15 14 18 18 C 1.37881 * 120.00332 * 94.46248 * 16 15 14 19 19 N 1.31513 * 120.00475 * 187.70083 * 18 16 15 20 20 Si 1.86810 * 119.99393 * 7.70301 * 18 16 15 21 21 H 1.48499 * 109.46966 * 94.51272 * 20 18 16 22 22 H 1.48504 * 109.46424 * 214.51016 * 20 18 16 23 23 H 1.48492 * 109.47217 * 334.51021 * 20 18 16 24 24 C 1.53005 * 117.51422 * 80.24352 * 15 14 13 25 25 C 1.53003 * 117.49868 * 148.87066 * 15 14 13 26 26 H 1.09001 * 109.46662 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46599 * 299.99418 * 1 2 3 28 28 H 1.08991 * 109.47669 * 59.99954 * 1 2 3 29 29 H 1.08999 * 109.46599 * 240.00582 * 2 1 3 30 30 H 1.08998 * 109.47346 * 120.00653 * 2 1 3 31 31 H 1.08994 * 109.47516 * 60.00688 * 3 2 1 32 32 H 1.08998 * 109.47719 * 300.00424 * 3 2 1 33 33 H 1.08996 * 110.48763 * 261.59413 * 6 4 3 34 34 H 1.09003 * 110.48724 * 24.11055 * 6 4 3 35 35 H 1.08995 * 110.75758 * 80.37422 * 7 6 4 36 36 H 1.09003 * 110.75254 * 203.56281 * 7 6 4 37 37 H 1.08993 * 110.48939 * 279.26626 * 8 7 6 38 38 H 1.08997 * 110.48248 * 156.61977 * 8 7 6 39 39 H 0.97005 * 119.99843 * 5.10396 * 13 11 9 40 40 H 1.09005 * 109.47305 * 55.70811 * 14 13 11 41 41 H 1.08997 * 109.47096 * 295.71322 * 14 13 11 42 42 H 0.97003 * 119.99822 * 179.97438 * 19 18 16 43 43 H 1.08996 * 117.49675 * 214.97143 * 24 15 14 44 44 H 1.08996 * 117.49959 * 359.97438 * 24 15 14 45 45 H 1.08997 * 117.49557 * 359.97438 * 25 15 14 46 46 H 1.08998 * 117.49731 * 144.97440 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9435 0.8605 0.8418 6 6 4.0989 0.8545 -1.3251 7 6 5.3543 1.7042 -1.6434 8 6 4.9279 3.1246 -1.1967 9 6 4.0971 2.8859 0.0810 10 1 4.7257 3.0045 0.9636 11 6 2.9437 3.8543 0.1353 12 8 2.4308 4.2446 -0.8921 13 7 2.4823 4.2868 1.3255 14 6 1.2921 5.1389 1.3839 15 6 0.9214 5.3978 2.8456 16 6 0.4822 4.1877 3.6289 17 1 -0.5505 3.8726 3.6021 18 6 1.3976 3.4859 4.3843 19 7 1.0526 2.3474 4.9450 20 14 3.1278 4.1525 4.6116 21 1 3.1970 4.9294 5.8752 22 1 4.0895 3.0226 4.6719 23 1 3.4723 5.0353 3.4683 24 6 1.7073 6.4766 3.5937 25 6 0.2571 6.7350 3.1798 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3632 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.6768 1.9563 0.8900 32 1 1.6766 1.9564 -0.8899 33 1 4.3701 -0.1932 -1.1960 34 1 3.3541 0.9604 -2.1140 35 1 6.2114 1.3585 -1.0655 36 1 5.5754 1.6819 -2.7105 37 1 4.3179 3.5992 -1.9652 38 1 5.8041 3.7334 -0.9738 39 1 2.9384 4.0339 2.1434 40 1 0.4631 4.6401 0.8817 41 1 1.4995 6.0872 0.8881 42 1 1.6968 1.8535 5.4761 43 1 1.9065 6.3110 4.6524 44 1 2.4888 7.0018 3.0447 45 1 0.0846 7.4304 2.3584 46 1 -0.4979 6.7393 3.9659 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451386554.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:25 Heat of formation + Delta-G solvation = -39.444070 kcal Electronic energy + Delta-G solvation = -23600.763176 eV Core-core repulsion = 20489.956028 eV Total energy + Delta-G solvation = -3110.807149 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.10415 -37.73930 -36.68753 -34.16050 -33.33825 -32.21622 -29.72501 -29.13742 -26.51642 -25.34199 -24.71556 -22.04029 -21.45820 -21.05657 -20.27169 -19.35232 -18.64735 -16.82218 -16.30017 -15.68977 -15.29491 -14.98923 -14.74238 -14.40826 -14.30072 -13.68550 -13.40369 -13.08143 -12.85358 -12.67212 -12.55910 -12.22016 -11.90522 -11.66644 -11.51837 -11.27685 -11.08051 -11.00688 -10.95028 -10.64604 -10.53264 -10.46146 -10.42429 -10.34154 -10.15719 -10.05572 -9.52578 -9.35205 -9.12233 -8.67770 -8.59323 -8.20151 -6.24053 -4.25048 3.06405 3.17339 3.19407 3.22825 3.84724 4.22174 4.62390 4.72395 4.80094 4.94488 5.04394 5.24969 5.36308 5.43237 5.49497 5.59168 5.64931 5.66618 5.68888 5.74058 5.76465 5.92305 5.95452 5.96868 6.04971 6.08619 6.14108 6.15697 6.24922 6.28760 6.35199 6.36947 6.39399 6.47492 6.50200 6.57910 6.63633 6.70716 6.79350 6.98304 6.98990 7.19085 7.61990 8.21472 8.37855 8.80941 8.83175 9.37864 10.87991 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.015676 B = 0.006887 C = 0.006237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.764941 B = 4064.913643 C = 4488.374432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.130 4.130 4 C -0.075 4.075 5 H 0.077 0.923 6 C -0.115 4.115 7 C -0.123 4.123 8 C -0.111 4.111 9 C -0.115 4.115 10 H 0.082 0.918 11 C 0.520 3.480 12 O -0.557 6.557 13 N -0.708 5.708 14 C 0.159 3.841 15 C -0.018 4.018 16 C -0.486 4.486 17 H 0.081 0.919 18 C 0.079 3.921 19 N -0.888 5.888 20 Si 0.858 3.142 21 H -0.278 1.278 22 H -0.291 1.291 23 H -0.248 1.248 24 C -0.200 4.200 25 C -0.172 4.172 26 H 0.047 0.953 27 H 0.062 0.938 28 H 0.049 0.951 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.086 0.914 38 H 0.063 0.937 39 H 0.398 0.602 40 H 0.066 0.934 41 H 0.043 0.957 42 H 0.265 0.735 43 H 0.084 0.916 44 H 0.075 0.925 45 H 0.075 0.925 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.144 -1.745 -9.085 11.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.167 4.167 4 C -0.094 4.094 5 H 0.095 0.905 6 C -0.153 4.153 7 C -0.161 4.161 8 C -0.149 4.149 9 C -0.137 4.137 10 H 0.101 0.899 11 C 0.306 3.694 12 O -0.436 6.436 13 N -0.361 5.361 14 C 0.036 3.964 15 C -0.019 4.019 16 C -0.523 4.523 17 H 0.099 0.901 18 C -0.124 4.124 19 N -0.525 5.525 20 Si 0.687 3.313 21 H -0.204 1.204 22 H -0.218 1.218 23 H -0.173 1.173 24 C -0.237 4.237 25 C -0.210 4.210 26 H 0.067 0.933 27 H 0.081 0.919 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.097 0.903 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.104 0.896 38 H 0.082 0.918 39 H 0.236 0.764 40 H 0.084 0.916 41 H 0.061 0.939 42 H 0.075 0.925 43 H 0.102 0.898 44 H 0.094 0.906 45 H 0.093 0.907 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.804 -1.639 -9.652 11.922 hybrid contribution 1.167 0.213 0.982 1.540 sum 7.971 -1.425 -8.670 11.863 Atomic orbital electron populations 1.21760 0.95939 1.00957 1.02333 1.21453 0.95996 0.96750 1.01191 1.21961 0.93623 0.97332 1.03789 1.21678 0.96377 0.92956 0.98392 0.90456 1.22437 0.97137 0.98653 0.97059 1.22474 0.97697 0.95193 1.00695 1.22337 0.98746 0.97266 0.96547 1.22049 0.95898 0.95355 1.00370 0.89941 1.20318 0.84591 0.80783 0.83691 1.90602 1.60531 1.58752 1.33756 1.46406 1.30160 1.51187 1.08336 1.20974 0.86552 0.92294 0.96608 1.19708 0.99844 0.90213 0.92127 1.20264 0.97373 1.08100 1.26612 0.90105 1.24994 0.97874 0.94269 0.95239 1.69886 1.35554 1.13557 1.33507 0.87390 0.85456 0.78557 0.79866 1.20398 1.21848 1.17324 1.22967 0.94192 1.06135 1.00425 1.22885 0.95215 1.00366 1.02569 0.93347 0.91879 0.93151 0.92662 0.92248 0.90270 0.91087 0.91751 0.91202 0.91710 0.91570 0.89577 0.91822 0.76395 0.91587 0.93868 0.92452 0.89789 0.90612 0.90678 0.89185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 9.91 37.16 0.37 -1.91 16 2 C -0.12 -1.72 5.77 -26.73 -0.15 -1.87 16 3 C -0.13 -2.18 3.39 -26.73 -0.09 -2.27 16 4 C -0.08 -1.11 2.95 -89.50 -0.26 -1.38 16 5 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 6 C -0.12 -1.42 5.45 -25.07 -0.14 -1.55 16 7 C -0.12 -1.39 6.91 -24.74 -0.17 -1.56 16 8 C -0.11 -1.51 6.31 -25.07 -0.16 -1.67 16 9 C -0.12 -1.82 3.30 -90.65 -0.30 -2.12 16 10 H 0.08 1.23 8.13 -51.93 -0.42 0.81 16 11 C 0.52 9.99 4.69 -10.98 -0.05 9.94 16 12 O -0.56 -11.85 14.96 5.55 0.08 -11.76 16 13 N -0.71 -14.55 4.90 -60.29 -0.30 -14.85 16 14 C 0.16 3.37 5.51 -4.04 -0.02 3.34 16 15 C -0.02 -0.39 1.38 -155.66 -0.21 -0.61 16 16 C -0.49 -12.74 9.38 -34.44 -0.32 -13.07 16 17 H 0.08 2.35 8.06 -52.49 -0.42 1.92 16 18 C 0.08 2.10 5.44 -17.82 -0.10 2.00 16 19 N -0.89 -25.31 13.96 55.43 0.77 -24.54 16 20 Si 0.86 19.57 22.43 -169.99 -3.81 15.76 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.25 -5.20 4.64 56.52 0.26 -4.93 16 24 C -0.20 -4.09 6.77 -26.73 -0.18 -4.27 16 25 C -0.17 -3.37 9.92 -26.73 -0.27 -3.63 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.05 0.71 7.45 -51.93 -0.39 0.33 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.08 1.59 6.96 -51.93 -0.36 1.23 16 32 H 0.07 1.28 7.01 -51.93 -0.36 0.91 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.89 7.79 -51.93 -0.40 0.49 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.09 1.31 6.89 -51.93 -0.36 0.96 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.40 8.31 3.91 -40.82 -0.16 8.15 16 40 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 41 H 0.04 0.87 8.09 -51.93 -0.42 0.45 16 42 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 43 H 0.08 1.79 5.82 -51.93 -0.30 1.49 16 44 H 0.08 1.43 8.12 -51.93 -0.42 1.01 16 45 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 46 H 0.09 1.76 8.14 -51.93 -0.42 1.33 16 LS Contribution 346.41 15.07 5.22 5.22 Total: -1.00 -28.31 346.41 -8.46 -36.78 By element: Atomic # 1 Polarization: 22.39 SS G_CDS: -8.37 Total: 14.02 kcal Atomic # 6 Polarization: -18.57 SS G_CDS: -2.06 Total: -20.63 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: 0.48 Total: -39.38 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.08 Total: -11.76 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -3.81 Total: 15.76 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -28.31 -8.46 -36.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451386554.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.669 kcal (2) G-P(sol) polarization free energy of solvation -28.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds