Wall clock time and date at job start Tue Mar 31 2020 02:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52993 * 109.46771 * 2 1 4 4 C 1.53000 * 109.47073 * 180.02562 * 3 2 1 5 5 H 1.08995 * 110.01868 * 304.62946 * 4 3 2 6 6 C 1.54267 * 110.07340 * 66.04712 * 4 3 2 7 7 C 1.54893 * 104.19520 * 142.91864 * 6 4 3 8 8 C 1.54888 * 102.74865 * 322.05554 * 7 6 4 9 9 C 1.53879 * 110.03541 * 183.23810 * 4 3 2 10 10 H 1.09001 * 110.03264 * 121.33479 * 9 4 3 11 11 C 1.50702 * 110.02715 * 359.95256 * 9 4 3 12 12 O 1.21283 * 119.99883 * 274.17118 * 11 9 4 13 13 N 1.34778 * 120.00028 * 94.18414 * 11 9 4 14 14 C 1.46496 * 120.00056 * 185.10438 * 13 11 9 15 15 C 1.53001 * 109.47334 * 175.70681 * 14 13 11 16 16 C 1.50692 * 115.55177 * 294.54552 * 15 14 13 17 17 H 1.08002 * 120.00428 * 274.18942 * 16 15 14 18 18 C 1.37881 * 120.00332 * 94.46248 * 16 15 14 19 19 N 1.31513 * 120.00475 * 187.70083 * 18 16 15 20 20 Si 1.86810 * 119.99393 * 7.70301 * 18 16 15 21 21 H 1.48499 * 109.46966 * 94.51272 * 20 18 16 22 22 H 1.48504 * 109.46424 * 214.51016 * 20 18 16 23 23 H 1.48492 * 109.47217 * 334.51021 * 20 18 16 24 24 C 1.53005 * 117.51422 * 80.24352 * 15 14 13 25 25 C 1.53003 * 117.49868 * 148.87066 * 15 14 13 26 26 H 1.09001 * 109.46662 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46599 * 299.99418 * 1 2 3 28 28 H 1.08991 * 109.47669 * 59.99954 * 1 2 3 29 29 H 1.08999 * 109.46599 * 240.00582 * 2 1 3 30 30 H 1.08998 * 109.47346 * 120.00653 * 2 1 3 31 31 H 1.08994 * 109.47516 * 60.00688 * 3 2 1 32 32 H 1.08998 * 109.47719 * 300.00424 * 3 2 1 33 33 H 1.08996 * 110.48763 * 261.59413 * 6 4 3 34 34 H 1.09003 * 110.48724 * 24.11055 * 6 4 3 35 35 H 1.08995 * 110.75758 * 80.37422 * 7 6 4 36 36 H 1.09003 * 110.75254 * 203.56281 * 7 6 4 37 37 H 1.08993 * 110.48939 * 279.26626 * 8 7 6 38 38 H 1.08997 * 110.48248 * 156.61977 * 8 7 6 39 39 H 0.97005 * 119.99843 * 5.10396 * 13 11 9 40 40 H 1.09005 * 109.47305 * 55.70811 * 14 13 11 41 41 H 1.08997 * 109.47096 * 295.71322 * 14 13 11 42 42 H 0.97003 * 119.99822 * 179.97438 * 19 18 16 43 43 H 1.08996 * 117.49675 * 214.97143 * 24 15 14 44 44 H 1.08996 * 117.49959 * 359.97438 * 24 15 14 45 45 H 1.08997 * 117.49557 * 359.97438 * 25 15 14 46 46 H 1.08998 * 117.49731 * 144.97440 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9435 0.8605 0.8418 6 6 4.0989 0.8545 -1.3251 7 6 5.3543 1.7042 -1.6434 8 6 4.9279 3.1246 -1.1967 9 6 4.0971 2.8859 0.0810 10 1 4.7257 3.0045 0.9636 11 6 2.9437 3.8543 0.1353 12 8 2.4308 4.2446 -0.8921 13 7 2.4823 4.2868 1.3255 14 6 1.2921 5.1389 1.3839 15 6 0.9214 5.3978 2.8456 16 6 0.4822 4.1877 3.6289 17 1 -0.5505 3.8726 3.6021 18 6 1.3976 3.4859 4.3843 19 7 1.0526 2.3474 4.9450 20 14 3.1278 4.1525 4.6116 21 1 3.1970 4.9294 5.8752 22 1 4.0895 3.0226 4.6719 23 1 3.4723 5.0353 3.4683 24 6 1.7073 6.4766 3.5937 25 6 0.2571 6.7350 3.1798 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3632 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.6768 1.9563 0.8900 32 1 1.6766 1.9564 -0.8899 33 1 4.3701 -0.1932 -1.1960 34 1 3.3541 0.9604 -2.1140 35 1 6.2114 1.3585 -1.0655 36 1 5.5754 1.6819 -2.7105 37 1 4.3179 3.5992 -1.9652 38 1 5.8041 3.7334 -0.9738 39 1 2.9384 4.0339 2.1434 40 1 0.4631 4.6401 0.8817 41 1 1.4995 6.0872 0.8881 42 1 1.6968 1.8535 5.4761 43 1 1.9065 6.3110 4.6524 44 1 2.4888 7.0018 3.0447 45 1 0.0846 7.4304 2.3584 46 1 -0.4979 6.7393 3.9659 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451386554.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:24 Heat of formation + Delta-G solvation = -55.715356 kcal Electronic energy + Delta-G solvation = -23601.468752 eV Core-core repulsion = 20489.956028 eV Total energy + Delta-G solvation = -3111.512725 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.50582 -39.27297 -38.17408 -35.38367 -34.95668 -34.27398 -30.90200 -30.32526 -28.23943 -27.16579 -25.97726 -23.64333 -22.66014 -22.44984 -21.38272 -21.08514 -20.19865 -18.53507 -17.77633 -17.17162 -16.83982 -16.61805 -16.11372 -15.81504 -15.69091 -15.15464 -14.76928 -14.58571 -14.50520 -14.29863 -13.93501 -13.74499 -13.32572 -13.01708 -12.94114 -12.88104 -12.68795 -12.26093 -12.11050 -12.07125 -11.95374 -11.77403 -11.69731 -11.47774 -11.43905 -11.36549 -11.31311 -11.06330 -10.87678 -10.49088 -10.33968 -9.87922 -8.31823 -6.38280 1.24489 1.30199 1.41101 1.68215 2.27154 2.33772 3.00874 3.19717 3.49781 3.62586 3.68698 3.94498 4.03536 4.10556 4.26154 4.29249 4.33434 4.39979 4.44791 4.48648 4.51989 4.58111 4.62263 4.68886 4.77090 4.79170 4.81131 4.90402 4.96818 5.01915 5.03474 5.07667 5.18023 5.23212 5.25511 5.26589 5.30446 5.39228 5.42424 5.44754 5.52833 5.56991 5.68418 6.26852 6.61066 6.69582 7.27029 7.29284 8.84006 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.015676 B = 0.006887 C = 0.006237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.764941 B = 4064.913643 C = 4488.374432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C -0.123 4.123 4 C -0.077 4.077 5 H 0.084 0.916 6 C -0.111 4.111 7 C -0.114 4.114 8 C -0.109 4.109 9 C -0.119 4.119 10 H 0.094 0.906 11 C 0.518 3.482 12 O -0.581 6.581 13 N -0.716 5.716 14 C 0.168 3.832 15 C -0.044 4.044 16 C -0.490 4.490 17 H 0.030 0.970 18 C 0.030 3.970 19 N -0.937 5.937 20 Si 0.918 3.082 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.219 1.219 24 C -0.189 4.189 25 C -0.157 4.157 26 H 0.070 0.930 27 H 0.028 0.972 28 H 0.052 0.948 29 H 0.083 0.917 30 H 0.058 0.942 31 H 0.035 0.965 32 H 0.052 0.948 33 H 0.087 0.913 34 H 0.062 0.938 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.065 0.935 38 H 0.081 0.919 39 H 0.396 0.604 40 H 0.042 0.958 41 H 0.060 0.940 42 H 0.267 0.733 43 H 0.076 0.924 44 H 0.102 0.898 45 H 0.106 0.894 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.153 -1.297 -10.348 14.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.150 4.150 3 C -0.161 4.161 4 C -0.096 4.096 5 H 0.102 0.898 6 C -0.148 4.148 7 C -0.151 4.151 8 C -0.147 4.147 9 C -0.141 4.141 10 H 0.113 0.887 11 C 0.306 3.694 12 O -0.463 6.463 13 N -0.368 5.368 14 C 0.044 3.956 15 C -0.045 4.045 16 C -0.528 4.528 17 H 0.048 0.952 18 C -0.168 4.168 19 N -0.576 5.576 20 Si 0.743 3.257 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.143 1.143 24 C -0.226 4.226 25 C -0.195 4.195 26 H 0.089 0.911 27 H 0.047 0.953 28 H 0.071 0.929 29 H 0.102 0.898 30 H 0.076 0.924 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.105 0.895 34 H 0.081 0.919 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.084 0.916 38 H 0.100 0.900 39 H 0.233 0.767 40 H 0.060 0.940 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.094 0.906 44 H 0.120 0.880 45 H 0.124 0.876 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 9.807 -1.173 -10.932 14.733 hybrid contribution 0.044 0.056 1.371 1.373 sum 9.851 -1.117 -9.561 13.773 Atomic orbital electron populations 1.21753 0.96507 1.01921 1.00737 1.21451 0.95519 0.95586 1.02429 1.21833 0.95570 0.97967 1.00684 1.21756 0.94517 0.92823 1.00496 0.89769 1.22425 0.97441 1.00027 0.94947 1.22473 0.97551 0.92955 1.02115 1.22349 0.98567 0.99155 0.94635 1.22221 0.94850 0.94692 1.02293 0.88734 1.20966 0.85072 0.80576 0.82764 1.90581 1.61616 1.59645 1.34414 1.46496 1.29979 1.51550 1.08780 1.20785 0.86342 0.92840 0.95666 1.19540 1.02923 0.89751 0.92293 1.20331 0.95269 1.09924 1.27274 0.95157 1.25763 1.02281 0.94114 0.94689 1.70043 1.37338 1.15297 1.34916 0.86417 0.80125 0.78490 0.80621 1.20217 1.21402 1.14260 1.23008 0.95329 1.04350 0.99881 1.22964 0.94822 0.98602 1.03077 0.91076 0.95305 0.92898 0.89799 0.92357 0.94580 0.92883 0.89483 0.91940 0.89785 0.89826 0.91643 0.90044 0.76657 0.94010 0.92164 0.92429 0.90589 0.87989 0.87567 0.89690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.66 9.91 71.98 0.71 -3.95 16 2 C -0.11 -3.29 5.77 30.59 0.18 -3.11 16 3 C -0.12 -4.21 3.39 30.59 0.10 -4.11 16 4 C -0.08 -2.17 2.95 -10.07 -0.03 -2.20 16 5 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 6 C -0.11 -2.39 5.45 31.67 0.17 -2.22 16 7 C -0.11 -2.12 6.91 31.89 0.22 -1.90 16 8 C -0.11 -2.68 6.31 31.67 0.20 -2.48 16 9 C -0.12 -3.57 3.30 -10.81 -0.04 -3.60 16 10 H 0.09 2.59 8.13 -2.39 -0.02 2.57 16 11 C 0.52 19.76 4.69 87.66 0.41 20.17 16 12 O -0.58 -24.89 14.96 -3.04 -0.05 -24.94 16 13 N -0.72 -29.24 4.90 -463.06 -2.27 -31.51 16 14 C 0.17 7.10 5.51 86.38 0.48 7.58 16 15 C -0.04 -1.94 1.38 -52.93 -0.07 -2.02 16 16 C -0.49 -26.88 9.38 25.60 0.24 -26.64 16 17 H 0.03 1.90 8.06 -2.91 -0.02 1.88 16 18 C 0.03 1.64 5.44 84.66 0.46 2.10 16 19 N -0.94 -55.75 13.96 21.45 0.30 -55.45 16 20 Si 0.92 40.22 22.43 68.60 1.54 41.75 16 21 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 22 H -0.29 -12.34 7.11 99.48 0.71 -11.64 16 23 H -0.22 -8.44 4.64 99.48 0.46 -7.98 16 24 C -0.19 -7.25 6.77 30.60 0.21 -7.04 16 25 C -0.16 -5.88 9.92 30.60 0.30 -5.57 16 26 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.08 1.99 7.45 -2.39 -0.02 1.97 16 30 H 0.06 1.71 8.14 -2.39 -0.02 1.70 16 31 H 0.04 1.53 6.96 -2.39 -0.02 1.51 16 32 H 0.05 1.97 7.01 -2.39 -0.02 1.95 16 33 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.06 1.45 7.79 -2.39 -0.02 1.43 16 35 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.06 1.89 6.89 -2.39 -0.02 1.88 16 38 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.40 16.20 3.91 -92.70 -0.36 15.83 16 40 H 0.04 1.93 8.14 -2.38 -0.02 1.91 16 41 H 0.06 2.34 8.09 -2.39 -0.02 2.32 16 42 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 43 H 0.08 3.07 5.82 -2.39 -0.01 3.05 16 44 H 0.10 3.42 8.12 -2.39 -0.02 3.40 16 45 H 0.11 3.33 8.14 -2.39 -0.02 3.31 16 46 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16 Total: -1.00 -65.06 346.41 3.40 -61.66 By element: Atomic # 1 Polarization: 43.16 SS G_CDS: 0.33 Total: 43.48 kcal Atomic # 6 Polarization: -38.54 SS G_CDS: 3.55 Total: -35.00 kcal Atomic # 7 Polarization: -85.00 SS G_CDS: -1.97 Total: -86.97 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: -0.05 Total: -24.94 kcal Atomic # 14 Polarization: 40.22 SS G_CDS: 1.54 Total: 41.75 kcal Total: -65.06 3.40 -61.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451386554.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.948 kcal (2) G-P(sol) polarization free energy of solvation -65.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds