Wall clock time and date at job start Tue Mar 31 2020 02:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47207 * 2 1 4 4 C 1.53003 * 109.47207 * 180.02562 * 3 2 1 5 5 H 1.08993 * 110.01507 * 305.70767 * 4 3 2 6 6 C 1.53876 * 110.02564 * 67.09495 * 4 3 2 7 7 C 1.54271 * 106.59496 * 119.28875 * 6 4 3 8 8 C 1.54881 * 104.19708 * 23.60428 * 7 6 4 9 9 C 1.54257 * 110.03379 * 184.31267 * 4 3 2 10 10 H 1.09000 * 110.48809 * 335.78328 * 9 4 3 11 11 C 1.50702 * 110.48850 * 98.43088 * 9 4 3 12 12 O 1.21277 * 119.99539 * 35.66794 * 11 9 4 13 13 N 1.34779 * 120.00051 * 215.67246 * 11 9 4 14 14 C 1.46497 * 119.99625 * 185.54625 * 13 11 9 15 15 C 1.53002 * 109.46621 * 185.46191 * 14 13 11 16 16 C 1.50701 * 115.55079 * 64.81562 * 15 14 13 17 17 H 1.08001 * 119.99879 * 267.62085 * 16 15 14 18 18 C 1.37877 * 120.00512 * 87.62341 * 16 15 14 19 19 N 1.31507 * 120.00301 * 181.32157 * 18 16 15 20 20 Si 1.86801 * 119.99680 * 1.31681 * 18 16 15 21 21 H 1.48497 * 109.47187 * 87.23697 * 20 18 16 22 22 H 1.48502 * 109.47106 * 207.23886 * 20 18 16 23 23 H 1.48507 * 109.47381 * 327.23512 * 20 18 16 24 24 C 1.53000 * 117.50189 * 279.13707 * 15 14 13 25 25 C 1.53001 * 117.49692 * 210.47920 * 15 14 13 26 26 H 1.09004 * 109.46924 * 299.99650 * 1 2 3 27 27 H 1.08993 * 109.47347 * 59.99155 * 1 2 3 28 28 H 1.08997 * 109.47068 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46508 * 240.00433 * 2 1 3 30 30 H 1.08993 * 109.47347 * 120.00845 * 2 1 3 31 31 H 1.08993 * 109.47657 * 300.00655 * 3 2 1 32 32 H 1.09004 * 109.46893 * 60.00331 * 3 2 1 33 33 H 1.09004 * 110.03089 * 238.56322 * 6 4 3 34 34 H 1.08991 * 110.03724 * 359.95432 * 6 4 3 35 35 H 1.09000 * 110.48472 * 142.29094 * 7 6 4 36 36 H 1.09004 * 110.48062 * 264.79420 * 7 6 4 37 37 H 1.09001 * 110.75540 * 80.37666 * 8 7 6 38 38 H 1.08997 * 110.75566 * 203.56035 * 8 7 6 39 39 H 0.96998 * 119.99813 * 5.54374 * 13 11 9 40 40 H 1.09000 * 109.47313 * 305.45837 * 14 13 11 41 41 H 1.09000 * 109.47197 * 65.46635 * 14 13 11 42 42 H 0.96999 * 120.00346 * 179.97438 * 19 18 16 43 43 H 1.08997 * 117.49626 * 0.02562 * 24 15 14 44 44 H 1.09000 * 117.49582 * 145.01880 * 24 15 14 45 45 H 1.08999 * 117.50214 * 214.98164 * 25 15 14 46 46 H 1.08999 * 117.50169 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 1 3.9435 0.8446 0.8307 6 6 4.0965 0.8800 -1.3327 7 6 4.9266 2.0032 -1.9879 8 6 5.3533 2.9019 -0.8009 9 6 4.0986 2.8876 0.1083 10 1 3.3543 3.5947 -0.2579 11 6 4.4743 3.2058 1.5326 12 8 4.9620 2.3476 2.2372 13 7 4.2683 4.4441 2.0234 14 6 4.7434 4.7883 3.3657 15 6 4.2666 6.1958 3.7300 16 6 2.7743 6.3642 3.8561 17 1 2.1924 6.6792 3.0025 18 6 2.1518 6.1161 5.0610 19 7 0.8465 6.2379 5.1642 20 14 3.1627 5.6069 6.5471 21 1 3.6405 6.8190 7.2597 22 1 2.3224 4.7935 7.4623 23 1 4.3290 4.8032 6.1006 24 6 5.0668 7.3776 3.1788 25 6 5.1522 7.0217 4.6651 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8898 28 1 -0.3633 -1.0276 0.0005 29 1 1.8932 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8898 31 1 1.6767 1.9564 -0.8898 32 1 1.6767 1.9563 0.8901 33 1 4.7262 0.0097 -1.1476 34 1 3.2620 0.6063 -1.9782 35 1 5.8026 1.5886 -2.4868 36 1 4.3165 2.5655 -2.6948 37 1 6.2109 2.4744 -0.2814 38 1 5.5752 3.9130 -1.1423 39 1 3.8055 5.1072 1.4877 40 1 4.3472 4.0727 4.0861 41 1 5.8328 4.7576 3.3845 42 1 0.4085 6.0630 6.0118 43 1 5.9328 7.1525 2.5564 44 1 4.5139 8.2770 2.9076 45 1 4.6555 7.6872 5.3712 46 1 6.0742 6.5623 5.0212 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451386555.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:29 Heat of formation + Delta-G solvation = -51.196630 kcal Electronic energy + Delta-G solvation = -22572.037386 eV Core-core repulsion = 19460.720607 eV Total energy + Delta-G solvation = -3111.316778 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.90494 -37.85403 -36.79559 -34.38797 -33.37941 -32.13153 -29.77378 -29.37351 -26.57935 -25.34990 -24.83623 -21.85670 -21.72814 -21.26397 -19.77295 -19.44357 -18.89130 -17.11723 -16.37230 -15.47357 -15.39783 -15.04181 -14.70507 -14.39846 -14.27398 -13.82688 -13.51697 -13.01882 -12.84277 -12.75494 -12.57707 -12.40741 -12.29359 -12.07604 -11.56113 -11.35573 -11.17350 -11.09072 -10.92722 -10.80596 -10.70801 -10.49026 -10.40745 -10.33901 -10.26696 -10.17943 -9.70013 -9.28767 -9.18646 -8.66343 -8.56223 -8.26342 -6.16150 -4.20644 3.12362 3.28290 3.38693 3.43705 3.77391 4.39720 4.49560 4.67727 4.72519 4.91616 5.04288 5.07617 5.12794 5.20719 5.39490 5.44684 5.47733 5.56475 5.59939 5.64382 5.68226 5.70236 5.84274 5.87000 5.89315 5.93322 6.00538 6.05293 6.07835 6.14295 6.15489 6.22756 6.26242 6.32456 6.40051 6.42863 6.52800 6.57138 6.69137 6.99154 7.07208 7.17239 7.67162 8.21418 8.40387 8.82221 8.83685 9.47049 10.95198 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.016815 B = 0.005017 C = 0.004240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.821734 B = 5579.376044 C = 6601.664732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.116 4.116 4 C -0.080 4.080 5 H 0.089 0.911 6 C -0.118 4.118 7 C -0.122 4.122 8 C -0.108 4.108 9 C -0.108 4.108 10 H 0.091 0.909 11 C 0.514 3.486 12 O -0.557 6.557 13 N -0.701 5.701 14 C 0.155 3.845 15 C -0.015 4.015 16 C -0.489 4.489 17 H 0.078 0.922 18 C 0.080 3.920 19 N -0.895 5.895 20 Si 0.880 3.120 21 H -0.277 1.277 22 H -0.294 1.294 23 H -0.259 1.259 24 C -0.179 4.179 25 C -0.195 4.195 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.403 0.597 40 H 0.066 0.934 41 H 0.040 0.960 42 H 0.265 0.735 43 H 0.072 0.928 44 H 0.087 0.913 45 H 0.090 0.910 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.280 -7.897 -13.322 16.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.153 4.153 4 C -0.099 4.099 5 H 0.107 0.893 6 C -0.156 4.156 7 C -0.159 4.159 8 C -0.146 4.146 9 C -0.130 4.130 10 H 0.110 0.890 11 C 0.299 3.701 12 O -0.436 6.436 13 N -0.350 5.350 14 C 0.031 3.969 15 C -0.016 4.016 16 C -0.527 4.527 17 H 0.096 0.904 18 C -0.123 4.123 19 N -0.532 5.532 20 Si 0.708 3.292 21 H -0.203 1.203 22 H -0.221 1.221 23 H -0.183 1.183 24 C -0.216 4.216 25 C -0.233 4.233 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.237 0.763 40 H 0.084 0.916 41 H 0.058 0.942 42 H 0.075 0.925 43 H 0.091 0.909 44 H 0.106 0.894 45 H 0.109 0.891 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.468 -8.506 -12.672 16.212 hybrid contribution 0.138 0.212 0.802 0.840 sum 5.606 -8.295 -11.871 15.529 Atomic orbital electron populations 1.21784 0.96067 1.01244 1.01977 1.21536 0.95632 0.97033 1.01847 1.21742 0.94419 0.96834 1.02308 1.21747 0.95149 0.94284 0.98687 0.89268 1.22228 0.99260 0.98052 0.96022 1.22337 0.99513 0.96837 0.97231 1.22416 0.96620 1.00203 0.95393 1.22178 0.99013 0.98920 0.92880 0.89024 1.20427 0.78528 0.82225 0.88877 1.90627 1.45892 1.46806 1.60317 1.45900 1.58200 1.12865 1.18029 1.21121 0.95604 0.97062 0.83063 1.19640 0.94513 0.87557 0.99937 1.20166 0.87413 1.46930 0.98145 0.90408 1.24960 0.94646 0.93922 0.98759 1.69877 1.08573 1.48577 1.26136 0.86855 0.80674 0.79007 0.82663 1.20340 1.22137 1.18330 1.22845 1.01929 1.01404 0.95410 1.22958 1.01241 1.05619 0.93462 0.92516 0.92899 0.93098 0.92160 0.92064 0.91958 0.91536 0.91928 0.91550 0.91704 0.91540 0.90907 0.91122 0.76288 0.91601 0.94188 0.92480 0.90915 0.89401 0.89129 0.90759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.91 37.16 0.37 -1.23 16 2 C -0.12 -1.36 5.76 -26.73 -0.15 -1.51 16 3 C -0.12 -1.42 4.35 -26.73 -0.12 -1.54 16 4 C -0.08 -1.03 2.47 -89.50 -0.22 -1.25 16 5 H 0.09 1.38 6.96 -51.93 -0.36 1.02 16 6 C -0.12 -1.22 5.95 -25.61 -0.15 -1.37 16 7 C -0.12 -1.16 6.83 -25.07 -0.17 -1.33 16 8 C -0.11 -1.25 6.32 -24.70 -0.16 -1.41 16 9 C -0.11 -1.48 2.79 -90.08 -0.25 -1.73 16 10 H 0.09 1.14 7.80 -51.93 -0.41 0.73 16 11 C 0.51 9.30 6.87 -10.98 -0.08 9.22 16 12 O -0.56 -12.05 15.84 5.56 0.09 -11.96 16 13 N -0.70 -13.14 5.45 -60.29 -0.33 -13.47 16 14 C 0.16 3.30 5.23 -4.04 -0.02 3.28 16 15 C -0.02 -0.34 0.84 -155.66 -0.13 -0.47 16 16 C -0.49 -12.89 9.31 -34.44 -0.32 -13.21 16 17 H 0.08 2.20 8.06 -52.49 -0.42 1.78 16 18 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 19 N -0.89 -26.56 13.96 55.43 0.77 -25.79 16 20 Si 0.88 21.67 24.70 -169.99 -4.20 17.47 16 21 H -0.28 -6.63 7.06 56.52 0.40 -6.23 16 22 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 23 H -0.26 -6.19 6.02 56.52 0.34 -5.85 16 24 C -0.18 -3.40 9.96 -26.69 -0.27 -3.66 16 25 C -0.19 -4.01 7.53 -26.69 -0.20 -4.21 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.59 6.94 -51.93 -0.36 0.23 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.61 6.82 -51.93 -0.35 0.26 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.94 8.05 -51.93 -0.42 0.52 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.40 6.94 8.42 -40.82 -0.34 6.60 16 40 H 0.07 1.59 6.90 -51.93 -0.36 1.23 16 41 H 0.04 0.81 8.09 -51.93 -0.42 0.39 16 42 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 43 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 44 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 45 H 0.09 1.96 7.00 -51.93 -0.36 1.59 16 46 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 358.92 15.07 5.41 5.41 Total: -1.00 -30.16 358.92 -8.73 -38.88 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -8.50 Total: 7.73 kcal Atomic # 6 Polarization: -16.31 SS G_CDS: -1.97 Total: -18.28 kcal Atomic # 7 Polarization: -39.70 SS G_CDS: 0.44 Total: -39.25 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: 0.09 Total: -11.96 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.20 Total: 17.47 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.16 -8.73 -38.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451386555.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.314 kcal (2) G-P(sol) polarization free energy of solvation -30.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds