Wall clock time and date at job start Tue Mar 31 2020 01:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46978 * 2 1 4 4 C 1.52993 * 109.47024 * 239.99817 * 2 1 3 5 5 C 1.50696 * 109.47429 * 60.00131 * 4 2 1 6 6 H 1.07999 * 119.99822 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00339 * 179.97438 * 5 4 2 8 8 N 1.31523 * 119.99981 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00300 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47086 * 59.99960 * 9 7 5 11 11 H 1.48503 * 109.47151 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46879 * 299.99904 * 9 7 5 13 13 C 1.52996 * 109.46975 * 119.99538 * 2 1 3 14 14 N 1.46500 * 109.47368 * 300.00161 * 13 2 1 15 15 C 1.34779 * 120.00165 * 179.97438 * 14 13 2 16 16 O 1.21282 * 119.99927 * 0.02562 * 15 14 13 17 17 C 1.50699 * 120.00033 * 179.97438 * 15 14 13 18 18 C 1.53006 * 109.46866 * 180.02562 * 17 15 14 19 19 H 1.08996 * 110.43608 * 56.08950 * 18 17 15 20 20 C 1.54888 * 110.48695 * 293.54553 * 18 17 15 21 21 C 1.54886 * 102.74881 * 203.38439 * 20 18 17 22 22 C 1.54265 * 104.19720 * 37.93956 * 21 20 18 23 23 H 1.09001 * 117.41271 * 195.19861 * 22 21 20 24 24 C 1.52994 * 118.19966 * 40.57254 * 22 21 20 25 25 C 1.52995 * 60.37817 * 266.38135 * 24 22 21 26 26 H 1.08997 * 119.75768 * 248.87130 * 25 24 22 27 27 H 1.09001 * 109.47375 * 300.00092 * 1 2 3 28 28 H 1.09002 * 109.47045 * 60.00167 * 1 2 3 29 29 H 1.09000 * 109.47140 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47006 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47097 * 299.99801 * 3 2 1 32 32 H 1.09001 * 109.47142 * 59.99766 * 3 2 1 33 33 H 1.09004 * 109.46862 * 180.02562 * 4 2 1 34 34 H 1.09000 * 109.47250 * 300.00041 * 4 2 1 35 35 H 0.96996 * 119.99943 * 179.97438 * 8 7 5 36 36 H 1.08996 * 109.47261 * 179.97438 * 13 2 1 37 37 H 1.09004 * 109.47368 * 60.00217 * 13 2 1 38 38 H 0.96996 * 119.99985 * 0.02562 * 14 13 2 39 39 H 1.08993 * 109.47512 * 60.00410 * 17 15 14 40 40 H 1.09000 * 109.47247 * 300.00119 * 17 15 14 41 41 H 1.09003 * 110.75769 * 321.69667 * 20 18 17 42 42 H 1.09001 * 110.75413 * 84.88207 * 20 18 17 43 43 H 1.08996 * 110.49010 * 156.62516 * 21 20 18 44 44 H 1.09009 * 110.48223 * 279.26345 * 21 20 18 45 45 H 1.09003 * 117.46156 * 13.98133 * 24 22 21 46 46 H 1.09002 * 117.46395 * 158.80676 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9171 0.8674 -2.3806 7 6 1.8711 -0.4817 -3.7319 8 7 2.6273 -1.5511 -3.8526 9 14 1.2491 0.3992 -5.2572 10 1 1.7442 1.7993 -5.2567 11 1 1.7440 -0.3010 -6.4697 12 1 -0.2359 0.3993 -5.2577 13 6 2.0399 -0.7211 1.2493 14 7 1.5516 -0.0305 2.4454 15 6 1.8767 -0.4912 3.6696 16 8 2.5740 -1.4773 3.7809 17 6 1.3748 0.2196 4.9000 18 6 1.8847 -0.5017 6.1493 19 1 2.9723 -0.5720 6.1309 20 6 1.2521 -1.9113 6.2575 21 6 1.3629 -2.2204 7.7712 22 6 1.0776 -0.8675 8.4554 23 1 1.3448 -0.7712 9.5078 24 6 -0.0349 0.0124 7.8819 25 6 1.4094 0.2253 7.4242 26 1 1.9396 1.1333 7.7113 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 3.1300 -0.7216 -1.2489 34 1 1.6766 -1.7489 -1.2492 35 1 2.8616 -1.8825 -4.7335 36 1 3.1299 -0.7216 1.2491 37 1 1.6766 -1.7488 1.2494 38 1 0.9936 0.7579 2.3564 39 1 0.2849 0.2204 4.9000 40 1 1.7389 1.2470 4.9000 41 1 0.2087 -1.8917 5.9427 42 1 1.8177 -2.6347 5.6703 43 1 0.6189 -2.9608 8.0649 44 1 2.3663 -2.5681 8.0171 45 1 -0.7242 -0.4470 7.1734 46 1 -0.4697 0.7653 8.5394 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451774860.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:31 Heat of formation + Delta-G solvation = -61.529742 kcal Electronic energy + Delta-G solvation = -22014.517067 eV Core-core repulsion = 18902.752211 eV Total energy + Delta-G solvation = -3111.764855 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.29067 -40.14961 -38.55971 -35.20593 -33.95187 -33.22136 -31.24807 -29.14110 -27.99260 -27.95456 -26.12973 -24.62735 -24.28981 -21.46952 -20.58298 -20.08298 -19.59616 -18.37254 -18.04344 -17.17397 -16.78930 -16.50675 -16.39528 -15.46441 -15.32717 -14.95688 -14.56135 -14.43760 -14.23792 -14.12884 -13.93302 -13.67409 -13.38063 -12.85847 -12.75704 -12.68487 -12.53561 -12.32366 -12.23994 -12.21979 -11.99846 -11.92934 -11.78326 -11.57061 -11.52450 -11.10995 -10.90056 -10.88629 -10.70897 -10.51007 -10.36308 -9.99193 -8.14152 -6.22354 1.42365 1.44614 1.51841 1.75349 2.30091 2.45598 2.85591 3.20092 3.51430 3.73582 3.90777 3.98303 4.05781 4.08811 4.19419 4.23697 4.31481 4.40316 4.50636 4.61838 4.69334 4.71884 4.73575 4.79242 4.84113 4.93948 4.97337 4.98880 5.06915 5.12372 5.12935 5.13408 5.32935 5.38186 5.41705 5.43141 5.48107 5.50145 5.50570 5.54464 5.60132 5.80531 5.89709 6.30078 6.67970 6.92984 7.37577 7.45591 8.98297 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.046187 B = 0.002872 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.090070 B = 9745.546130 C = 9980.342930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.065 4.065 3 C -0.121 4.121 4 C 0.040 3.960 5 C -0.514 4.514 6 H 0.074 0.926 7 C -0.006 4.006 8 N -0.940 5.940 9 Si 0.959 3.041 10 H -0.266 1.266 11 H -0.291 1.291 12 H -0.266 1.266 13 C 0.142 3.858 14 N -0.713 5.713 15 C 0.502 3.498 16 O -0.588 6.588 17 C -0.122 4.122 18 C -0.046 4.046 19 H 0.066 0.934 20 C -0.125 4.125 21 C -0.097 4.097 22 C -0.174 4.174 23 H 0.119 0.881 24 C -0.144 4.144 25 C -0.162 4.162 26 H 0.122 0.878 27 H 0.072 0.928 28 H 0.055 0.945 29 H 0.034 0.966 30 H 0.035 0.965 31 H 0.055 0.945 32 H 0.072 0.928 33 H -0.016 1.016 34 H -0.016 1.016 35 H 0.260 0.740 36 H 0.041 0.959 37 H 0.041 0.959 38 H 0.413 0.587 39 H 0.114 0.886 40 H 0.118 0.882 41 H 0.066 0.934 42 H 0.051 0.949 43 H 0.070 0.930 44 H 0.066 0.934 45 H 0.091 0.909 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.930 7.656 23.589 25.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.065 4.065 3 C -0.178 4.178 4 C 0.002 3.998 5 C -0.552 4.552 6 H 0.092 0.908 7 C -0.203 4.203 8 N -0.581 5.581 9 Si 0.784 3.216 10 H -0.191 1.191 11 H -0.217 1.217 12 H -0.191 1.191 13 C 0.018 3.982 14 N -0.366 5.366 15 C 0.290 3.710 16 O -0.468 6.468 17 C -0.161 4.161 18 C -0.064 4.064 19 H 0.085 0.915 20 C -0.163 4.163 21 C -0.134 4.134 22 C -0.192 4.192 23 H 0.137 0.863 24 C -0.181 4.181 25 C -0.180 4.180 26 H 0.140 0.860 27 H 0.091 0.909 28 H 0.074 0.926 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.002 0.998 34 H 0.002 0.998 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.251 0.749 39 H 0.132 0.868 40 H 0.136 0.864 41 H 0.085 0.915 42 H 0.070 0.930 43 H 0.088 0.912 44 H 0.085 0.915 45 H 0.109 0.891 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -6.354 6.854 23.532 25.320 hybrid contribution 0.159 -0.099 -1.472 1.484 sum -6.195 6.755 22.060 23.888 Atomic orbital electron populations 1.21688 0.93518 1.00870 1.01734 1.20701 0.96745 0.96317 0.92746 1.21691 0.99803 0.94589 1.01743 1.18971 0.94159 0.94144 0.92523 1.21570 1.30480 1.12118 0.91058 0.90844 1.25974 0.95652 0.95871 1.02800 1.70124 1.38787 1.25025 1.24166 0.85584 0.78982 0.78760 0.78229 1.19066 1.21742 1.19080 1.21139 0.97502 0.95244 0.84339 1.46047 1.53392 1.32202 1.04912 1.21503 0.79538 0.84294 0.85672 1.90671 1.40093 1.28595 1.87467 1.21697 1.03653 1.01036 0.89735 1.21246 0.99507 0.93815 0.91882 0.91541 1.22542 1.00296 0.96973 0.96444 1.21916 1.01426 0.96239 0.93861 1.23185 1.05357 0.92329 0.98318 0.86329 1.22983 0.90677 1.01696 1.02729 1.23112 0.99616 1.00136 0.95106 0.86033 0.90935 0.92584 0.94631 0.94616 0.92586 0.90918 0.99786 0.99794 0.93174 0.94043 0.94066 0.74878 0.86798 0.86395 0.91527 0.92970 0.91165 0.91483 0.89097 0.86677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.00 8.05 71.98 0.58 -3.42 16 2 C -0.06 -2.43 0.54 -52.19 -0.03 -2.46 16 3 C -0.12 -4.01 8.05 71.98 0.58 -3.43 16 4 C 0.04 2.03 4.04 29.84 0.12 2.15 16 5 C -0.51 -27.61 7.65 25.60 0.20 -27.42 16 6 H 0.07 3.66 5.68 -2.91 -0.02 3.64 16 7 C -0.01 -0.35 5.46 84.65 0.46 0.11 16 8 N -0.94 -57.58 13.29 21.45 0.28 -57.30 16 9 Si 0.96 43.57 29.54 68.60 2.03 45.59 16 10 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 11 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 12 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 13 C 0.14 5.11 4.56 86.38 0.39 5.50 16 14 N -0.71 -18.94 4.96 -463.06 -2.30 -21.24 16 15 C 0.50 13.71 7.61 87.66 0.67 14.38 16 16 O -0.59 -21.65 14.50 -3.04 -0.04 -21.69 16 17 C -0.12 -2.12 5.24 29.85 0.16 -1.96 16 18 C -0.05 -0.88 2.41 -9.72 -0.02 -0.90 16 19 H 0.07 1.57 8.02 -2.39 -0.02 1.55 16 20 C -0.13 -2.69 5.16 31.88 0.16 -2.52 16 21 C -0.10 -1.70 6.77 31.67 0.21 -1.49 16 22 C -0.17 -2.49 7.06 -10.07 -0.07 -2.56 16 23 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 24 C -0.14 -1.72 9.83 30.59 0.30 -1.42 16 25 C -0.16 -2.29 6.42 -10.07 -0.06 -2.35 16 26 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.07 1.77 6.86 -2.39 -0.02 1.75 16 28 H 0.06 1.99 6.62 -2.39 -0.02 1.97 16 29 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 31 H 0.06 1.99 6.62 -2.39 -0.02 1.97 16 32 H 0.07 1.77 6.86 -2.39 -0.02 1.75 16 33 H -0.02 -0.93 8.14 -2.38 -0.02 -0.95 16 34 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 35 H 0.26 15.13 8.31 -92.71 -0.77 14.35 16 36 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.41 8.23 6.16 -92.71 -0.57 7.66 16 39 H 0.11 1.51 8.10 -2.39 -0.02 1.50 16 40 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.07 1.35 7.26 -2.39 -0.02 1.33 16 42 H 0.05 1.46 7.05 -2.39 -0.02 1.44 16 43 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 45 H 0.09 1.14 7.21 -2.39 -0.02 1.13 16 46 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -69.18 354.90 3.99 -65.19 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: 0.38 Total: 17.24 kcal Atomic # 6 Polarization: -31.44 SS G_CDS: 3.65 Total: -27.80 kcal Atomic # 7 Polarization: -76.52 SS G_CDS: -2.01 Total: -78.53 kcal Atomic # 8 Polarization: -21.65 SS G_CDS: -0.04 Total: -21.69 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Total: -69.18 3.99 -65.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451774860.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.658 kcal (2) G-P(sol) polarization free energy of solvation -69.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds