Wall clock time and date at job start Tue Mar 31 2020 01:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46901 * 2 1 4 4 C 1.53000 * 109.47528 * 240.00294 * 2 1 3 5 5 C 1.50701 * 109.46983 * 59.99456 * 4 2 1 6 6 H 1.07998 * 120.00145 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00161 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99703 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00027 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47140 * 60.00723 * 9 7 5 11 11 H 1.48510 * 109.46754 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47297 * 300.00159 * 9 7 5 13 13 C 1.52997 * 109.47337 * 119.99728 * 2 1 3 14 14 N 1.46499 * 109.47555 * 300.00682 * 13 2 1 15 15 C 1.34777 * 120.00199 * 180.02562 * 14 13 2 16 16 O 1.21283 * 119.99750 * 359.97438 * 15 14 13 17 17 C 1.50702 * 119.99928 * 180.27479 * 15 14 13 18 18 C 1.52996 * 109.47159 * 179.72352 * 17 15 14 19 19 H 1.09002 * 110.43701 * 54.29360 * 18 17 15 20 20 C 1.54892 * 110.48720 * 291.75848 * 18 17 15 21 21 C 1.54882 * 102.75243 * 203.38047 * 20 18 17 22 22 C 1.54268 * 104.19614 * 37.93753 * 21 20 18 23 23 H 1.09001 * 117.41269 * 116.36890 * 22 21 20 24 24 C 1.52999 * 118.20198 * 272.21505 * 22 21 20 25 25 C 1.52860 * 60.50142 * 93.59062 * 24 22 21 26 26 H 1.08995 * 119.73055 * 111.15214 * 25 24 22 27 27 H 1.08993 * 109.47298 * 299.99321 * 1 2 3 28 28 H 1.09001 * 109.47411 * 60.00254 * 1 2 3 29 29 H 1.09002 * 109.46412 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47503 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47703 * 300.00482 * 3 2 1 32 32 H 1.09007 * 109.46685 * 60.00055 * 3 2 1 33 33 H 1.08992 * 109.47143 * 179.97438 * 4 2 1 34 34 H 1.08997 * 109.46799 * 299.99705 * 4 2 1 35 35 H 0.97003 * 120.00173 * 179.97438 * 8 7 5 36 36 H 1.08998 * 109.47382 * 180.02562 * 13 2 1 37 37 H 1.09002 * 109.47216 * 60.00680 * 13 2 1 38 38 H 0.97000 * 119.99484 * 359.97438 * 14 13 2 39 39 H 1.09004 * 109.46965 * 299.72211 * 17 15 14 40 40 H 1.08994 * 109.46990 * 59.72065 * 17 15 14 41 41 H 1.09007 * 110.74863 * 321.69546 * 20 18 17 42 42 H 1.08998 * 110.76201 * 85.05924 * 20 18 17 43 43 H 1.08997 * 110.49054 * 156.61368 * 21 20 18 44 44 H 1.08999 * 110.48695 * 279.26540 * 21 20 18 45 45 H 1.08994 * 117.46591 * 201.21430 * 24 22 21 46 46 H 1.09006 * 117.45600 * 346.01710 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8704 -0.4820 -3.7320 8 7 2.6258 -1.5518 -3.8527 9 14 1.2482 0.3990 -5.2571 10 1 1.7442 1.7987 -5.2572 11 1 1.7422 -0.3018 -6.4697 12 1 -0.2368 0.4000 -5.2570 13 6 2.0400 -0.7212 1.2492 14 7 1.5517 -0.0307 2.4454 15 6 1.8777 -0.4908 3.6695 16 8 2.5751 -1.4769 3.7807 17 6 1.3702 0.2159 4.9000 18 6 1.8762 -0.5082 6.1492 19 1 2.9615 -0.6051 6.1196 20 6 1.2109 -1.9013 6.2752 21 6 1.3308 -2.2017 7.7898 22 6 1.0859 -0.8373 8.4667 23 1 0.2082 -0.7448 9.1064 24 6 2.2853 0.0873 8.6848 25 6 1.4356 0.2414 7.4235 26 1 0.8151 1.1282 7.2947 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9565 -0.8899 32 1 1.6765 1.9563 0.8901 33 1 3.1300 -0.7207 -1.2494 34 1 1.6768 -1.7488 -1.2492 35 1 2.8596 -1.8836 -4.7337 36 1 3.1300 -0.7208 1.2495 37 1 1.6768 -1.7489 1.2493 38 1 0.9942 0.7581 2.3564 39 1 1.7326 1.2439 4.9041 40 1 0.2803 0.2149 4.8959 41 1 0.1649 -1.8586 5.9714 42 1 1.7542 -2.6432 5.6900 43 1 0.5724 -2.9216 8.0972 44 1 2.3281 -2.5718 8.0276 45 1 2.1931 0.8582 9.4498 46 1 3.2798 -0.3440 8.5702 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451774863.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:36 Heat of formation + Delta-G solvation = -45.835646 kcal Electronic energy + Delta-G solvation = -21928.493438 eV Core-core repulsion = 18817.409130 eV Total energy + Delta-G solvation = -3111.084308 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.21236 -39.04024 -37.06675 -33.56648 -32.78311 -32.05521 -30.55293 -27.25658 -26.68166 -26.51845 -24.92488 -23.00163 -22.59521 -20.60833 -20.07755 -19.63338 -18.26581 -16.71149 -16.35827 -16.10169 -15.56961 -15.11573 -14.81364 -14.50326 -13.97621 -13.50177 -13.35132 -13.15628 -13.00533 -12.92989 -12.73300 -12.29746 -12.06102 -11.88646 -11.39986 -11.24450 -11.15079 -11.00840 -10.87844 -10.84250 -10.75623 -10.63334 -10.40287 -10.33499 -10.26963 -9.87685 -9.79688 -9.66270 -9.14337 -8.93285 -8.67956 -8.36122 -6.00205 -4.01668 2.88082 3.31520 3.36995 3.37691 3.41315 3.48207 4.31397 4.44832 4.48560 4.56348 4.87020 4.96395 5.08933 5.13663 5.29887 5.32911 5.35126 5.40480 5.46441 5.55080 5.58949 5.62891 5.68729 5.74807 5.77244 5.85518 5.99069 6.05653 6.16760 6.19599 6.22763 6.30518 6.35400 6.39573 6.58748 6.62315 6.78792 7.06020 7.06874 7.12863 7.63459 7.76156 7.79675 7.98409 8.39859 8.49583 9.02955 9.61385 11.11243 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.048742 B = 0.002804 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.321196 B = 9983.695415 C =10177.151093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.073 4.073 3 C -0.127 4.127 4 C 0.036 3.964 5 C -0.512 4.512 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.128 3.872 14 N -0.724 5.724 15 C 0.506 3.494 16 O -0.544 6.544 17 C -0.133 4.133 18 C -0.045 4.045 19 H 0.083 0.917 20 C -0.116 4.116 21 C -0.097 4.097 22 C -0.169 4.169 23 H 0.107 0.893 24 C -0.154 4.154 25 C -0.163 4.163 26 H 0.109 0.891 27 H 0.028 0.972 28 H 0.066 0.934 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.066 0.934 32 H 0.028 0.972 33 H 0.018 0.982 34 H 0.018 0.982 35 H 0.261 0.739 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.397 0.603 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.063 0.937 42 H 0.082 0.918 43 H 0.067 0.933 44 H 0.066 0.934 45 H 0.095 0.905 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.294 4.738 22.067 22.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.073 4.073 3 C -0.184 4.184 4 C -0.001 4.001 5 C -0.550 4.550 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.005 3.995 14 N -0.375 5.375 15 C 0.292 3.708 16 O -0.422 6.422 17 C -0.173 4.173 18 C -0.064 4.064 19 H 0.101 0.899 20 C -0.153 4.153 21 C -0.135 4.135 22 C -0.187 4.187 23 H 0.125 0.875 24 C -0.190 4.190 25 C -0.182 4.182 26 H 0.127 0.873 27 H 0.047 0.953 28 H 0.085 0.915 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.047 0.953 33 H 0.036 0.964 34 H 0.036 0.964 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.232 0.768 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.082 0.918 42 H 0.100 0.900 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.114 0.886 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.714 3.893 21.982 22.630 hybrid contribution -0.639 0.908 -1.021 1.509 sum -4.353 4.801 20.960 21.939 Atomic orbital electron populations 1.21755 0.95309 1.01123 1.00192 1.20900 0.95438 0.95837 0.95131 1.21758 1.00519 0.95921 1.00195 1.19084 0.96337 0.95215 0.89499 1.21147 1.31258 1.12065 0.90544 0.92327 1.25016 0.95317 0.95085 0.99083 1.69956 1.36920 1.22976 1.23556 0.86708 0.79133 0.79765 0.82668 1.20328 1.21389 1.20334 1.21597 0.98822 0.95978 0.83069 1.46247 1.53295 1.31992 1.06013 1.20619 0.80600 0.84832 0.84777 1.90676 1.38200 1.26446 1.86906 1.21696 1.02350 1.00529 0.92747 1.21296 1.00796 0.93870 0.90419 0.89912 1.22750 1.00533 0.96716 0.95290 1.21969 1.01623 0.94865 0.95001 1.23298 1.00028 0.92566 1.02803 0.87536 1.23022 0.95827 1.01601 0.98594 1.23307 1.04586 1.00291 0.89970 0.87265 0.95256 0.91468 0.93410 0.93404 0.91467 0.95255 0.96373 0.96369 0.92973 0.91955 0.91944 0.76766 0.89071 0.89076 0.91780 0.89967 0.91428 0.91523 0.88628 0.88980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 2 C -0.07 -1.37 0.54 -154.51 -0.08 -1.45 16 3 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 4 C 0.04 0.89 4.04 -27.88 -0.11 0.77 16 5 C -0.51 -13.56 7.65 -34.44 -0.26 -13.83 16 6 H 0.06 1.49 5.68 -52.49 -0.30 1.19 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.89 -26.46 13.29 55.43 0.74 -25.72 16 9 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 C 0.13 2.26 4.56 -4.04 -0.02 2.24 16 14 N -0.72 -10.24 4.96 -60.29 -0.30 -10.54 16 15 C 0.51 7.19 7.63 -10.98 -0.08 7.11 16 16 O -0.54 -9.80 14.61 5.55 0.08 -9.72 16 17 C -0.13 -1.34 5.18 -27.88 -0.14 -1.48 16 18 C -0.05 -0.47 2.25 -88.96 -0.20 -0.67 16 19 H 0.08 1.01 7.96 -51.93 -0.41 0.59 16 20 C -0.12 -1.25 5.69 -24.74 -0.14 -1.40 16 21 C -0.10 -0.89 6.63 -25.08 -0.17 -1.06 16 22 C -0.17 -1.42 6.95 -89.39 -0.62 -2.04 16 23 H 0.11 0.80 8.14 -51.93 -0.42 0.37 16 24 C -0.15 -1.22 10.06 -26.80 -0.27 -1.49 16 25 C -0.16 -1.41 6.37 -89.46 -0.57 -1.98 16 26 H 0.11 0.83 8.05 -51.93 -0.42 0.41 16 27 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 28 H 0.07 1.26 6.62 -51.93 -0.34 0.91 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 32 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 33 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.40 4.71 6.16 -40.82 -0.25 4.46 16 39 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.09 0.77 8.06 -51.93 -0.42 0.36 16 41 H 0.06 0.67 8.00 -51.93 -0.42 0.26 16 42 H 0.08 1.08 7.17 -51.93 -0.37 0.70 16 43 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 356.85 15.07 5.38 5.38 Total: -1.00 -30.24 356.85 -9.49 -39.73 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -8.19 Total: 2.33 kcal Atomic # 6 Polarization: -15.44 SS G_CDS: -2.17 Total: -17.61 kcal Atomic # 7 Polarization: -36.69 SS G_CDS: 0.44 Total: -36.25 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.08 Total: -9.72 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.24 -9.49 -39.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451774863.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.106 kcal (2) G-P(sol) polarization free energy of solvation -30.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds