Wall clock time and date at job start Tue Mar 31 2020 01:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47105 * 2 1 4 4 C 1.52999 * 109.47101 * 119.99618 * 2 1 3 5 5 C 1.53002 * 109.47137 * 175.60678 * 4 2 1 6 6 C 1.50694 * 115.55120 * 298.65387 * 5 4 2 7 7 O 1.21279 * 119.99770 * 99.81322 * 6 5 4 8 8 N 1.34778 * 120.00138 * 279.80792 * 6 5 4 9 9 C 1.46499 * 119.99819 * 174.97427 * 8 6 5 10 10 H 1.09001 * 110.05592 * 326.41091 * 9 8 6 11 11 C 1.53873 * 110.03801 * 87.83450 * 9 8 6 12 12 C 1.54257 * 106.59956 * 119.28111 * 11 9 8 13 13 C 1.54890 * 104.19717 * 23.61205 * 12 11 9 14 14 H 1.09000 * 110.91706 * 80.44511 * 13 12 11 15 15 C 1.50704 * 110.75386 * 203.74196 * 13 12 11 16 16 H 1.07996 * 120.00068 * 113.32807 * 15 13 12 17 17 C 1.37874 * 120.00047 * 293.32583 * 15 13 12 18 18 N 1.31524 * 120.00000 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 120.00122 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47314 * 179.97438 * 19 17 15 21 21 H 1.48497 * 109.47341 * 300.00065 * 19 17 15 22 22 H 1.48501 * 109.46926 * 60.00233 * 19 17 15 23 23 C 1.54269 * 110.02905 * 205.00034 * 9 8 6 24 24 C 1.53004 * 117.51608 * 84.36007 * 5 4 2 25 25 C 1.52994 * 60.00042 * 107.47691 * 24 5 4 26 26 H 1.08995 * 109.47351 * 299.99745 * 1 2 3 27 27 H 1.09003 * 109.47028 * 60.00101 * 1 2 3 28 28 H 1.09003 * 109.46768 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47488 * 239.99489 * 2 1 3 30 30 H 1.09002 * 109.47176 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.46590 * 299.99759 * 3 2 1 32 32 H 1.09003 * 109.46554 * 59.99711 * 3 2 1 33 33 H 1.09009 * 109.46927 * 55.60947 * 4 2 1 34 34 H 1.08998 * 109.47769 * 295.61200 * 4 2 1 35 35 H 0.96997 * 119.99764 * 354.96974 * 8 6 5 36 36 H 1.09003 * 110.02924 * 238.56856 * 11 9 8 37 37 H 1.09002 * 110.02779 * 359.94338 * 11 9 8 38 38 H 1.09004 * 110.48653 * 264.92966 * 12 11 9 39 39 H 1.09007 * 110.48824 * 142.29084 * 12 11 9 40 40 H 0.96995 * 119.99569 * 0.02562 * 18 17 15 41 41 H 1.09006 * 110.48855 * 98.42297 * 23 9 8 42 42 H 1.09002 * 110.60085 * 335.83940 * 23 9 8 43 43 H 1.08999 * 117.49371 * 214.97384 * 24 5 4 44 44 H 1.09003 * 117.49636 * 359.97438 * 24 5 4 45 45 H 1.09006 * 117.49827 * 252.50500 * 25 24 5 46 46 H 1.09004 * 117.51849 * 107.48580 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5660 -0.8176 1.1953 6 6 4.1275 -1.5926 0.0313 7 8 4.5545 -1.0042 -0.9395 8 7 4.1553 -2.9395 0.0690 9 6 4.5983 -3.6962 -1.1046 10 1 4.3067 -3.1757 -2.0169 11 6 6.1255 -3.8801 -1.0678 12 6 6.3856 -5.4000 -1.0261 13 6 5.1065 -6.0212 -1.6403 14 1 5.1363 -5.9765 -2.7289 15 6 4.9243 -7.4416 -1.1709 16 1 4.0910 -7.6969 -0.5331 17 6 5.8214 -8.4153 -1.5556 18 7 6.8366 -8.1043 -2.3319 19 14 5.5952 -10.1761 -0.9744 20 1 6.6848 -11.0225 -1.5236 21 1 5.6363 -10.2167 0.5095 22 1 4.2844 -10.6890 -1.4476 23 6 3.9835 -5.1110 -1.0841 24 6 4.3684 0.3849 1.6964 25 6 4.3162 -0.8994 2.5262 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6138 -1.7237 1.2895 34 1 1.7423 -0.1640 2.1375 35 1 3.8822 -3.4079 0.8733 36 1 6.5751 -3.4487 -1.9622 37 1 6.5373 -3.4054 -0.1772 38 1 6.5172 -5.7364 0.0023 39 1 7.2592 -5.6542 -1.6264 40 1 6.9542 -7.1899 -2.6334 41 1 3.1040 -5.1542 -1.7266 42 1 3.7255 -5.4023 -0.0659 43 1 5.3024 0.6155 1.1840 44 1 3.8091 1.2451 2.0643 45 1 3.7226 -0.8842 3.4404 46 1 5.2157 -1.5141 2.5601 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452558219.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:25 Heat of formation + Delta-G solvation = -52.800647 kcal Electronic energy + Delta-G solvation = -22569.031694 eV Core-core repulsion = 19457.645361 eV Total energy + Delta-G solvation = -3111.386333 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -40.31342 -38.06281 -36.74759 -35.03464 -33.83199 -31.91308 -28.20667 -28.05332 -27.29005 -26.93310 -23.92010 -23.03778 -22.54481 -20.57360 -20.05140 -19.47764 -18.96989 -16.91793 -16.71886 -15.96180 -15.63525 -15.06734 -14.64131 -14.36246 -13.95255 -13.74395 -13.65755 -13.38456 -12.95231 -12.52866 -12.42780 -12.35326 -12.05248 -11.96703 -11.72492 -11.62069 -11.23909 -11.20271 -10.94919 -10.79669 -10.72629 -10.65597 -10.31788 -10.13301 -10.07602 -10.03223 -9.78808 -9.54044 -9.37793 -8.69655 -8.46512 -8.33583 -6.32774 -4.05273 2.77573 3.27985 3.43220 3.44444 3.57196 3.63397 4.37234 4.53331 4.60169 4.67200 4.78162 4.87913 4.99965 5.16178 5.34214 5.41585 5.42789 5.46623 5.48311 5.56056 5.56674 5.61717 5.66735 5.71465 5.76282 5.79334 5.88267 5.93774 6.06146 6.17619 6.21570 6.24431 6.26542 6.42389 6.51556 6.58354 6.71729 6.77690 7.00397 7.12240 7.32409 7.63930 7.78965 8.23761 8.43766 8.45502 8.89143 9.66899 11.05350 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.027571 B = 0.003630 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.323308 B = 7712.477343 C = 7966.750122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 C -0.147 4.147 4 C -0.068 4.068 5 C -0.152 4.152 6 C 0.547 3.453 7 O -0.540 6.540 8 N -0.713 5.713 9 C 0.139 3.861 10 H 0.079 0.921 11 C -0.131 4.131 12 C -0.115 4.115 13 C 0.036 3.964 14 H 0.026 0.974 15 C -0.594 4.594 16 H 0.048 0.952 17 C 0.020 3.980 18 N -0.912 5.912 19 Si 1.066 2.934 20 H -0.283 1.283 21 H -0.289 1.289 22 H -0.289 1.289 23 C -0.113 4.113 24 C -0.146 4.146 25 C -0.167 4.167 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.049 0.951 32 H 0.048 0.952 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.398 0.602 36 H 0.056 0.944 37 H 0.052 0.948 38 H 0.054 0.946 39 H 0.055 0.945 40 H 0.272 0.728 41 H 0.054 0.946 42 H 0.062 0.938 43 H 0.099 0.901 44 H 0.102 0.898 45 H 0.102 0.898 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.223 16.220 9.511 20.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.115 4.115 3 C -0.204 4.204 4 C -0.106 4.106 5 C -0.156 4.156 6 C 0.332 3.668 7 O -0.417 6.417 8 N -0.363 5.363 9 C 0.035 3.965 10 H 0.097 0.903 11 C -0.170 4.170 12 C -0.154 4.154 13 C 0.017 3.983 14 H 0.044 0.956 15 C -0.632 4.632 16 H 0.067 0.933 17 C -0.185 4.185 18 N -0.549 5.549 19 Si 0.895 3.105 20 H -0.208 1.208 21 H -0.215 1.215 22 H -0.215 1.215 23 C -0.151 4.151 24 C -0.183 4.183 25 C -0.204 4.204 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.233 0.767 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.072 0.928 42 H 0.081 0.919 43 H 0.117 0.883 44 H 0.121 0.879 45 H 0.120 0.880 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -8.271 15.110 8.690 19.294 hybrid contribution -0.772 1.313 0.503 1.604 sum -9.043 16.424 9.193 20.881 Atomic orbital electron populations 1.21840 0.95265 1.01691 1.01589 1.21076 0.95258 0.96878 0.98303 1.21911 1.02262 0.95378 1.00894 1.21120 0.89781 1.01133 0.98541 1.21488 0.95637 1.03390 0.95045 1.19471 0.77871 0.82373 0.87078 1.90678 1.47070 1.69450 1.34492 1.46296 1.66823 1.05825 1.17393 1.21841 0.94775 0.92528 0.87370 0.90281 1.22581 0.94775 0.98960 1.00671 1.22568 1.00685 0.91184 1.00923 1.19707 0.89344 0.94037 0.95247 0.95624 1.21910 1.13785 0.93147 1.34407 0.93333 1.25771 0.93114 1.04782 0.94803 1.70794 1.29179 1.22786 1.32107 0.83583 0.75914 0.75165 0.75870 1.20842 1.21540 1.21524 1.22628 0.99279 0.92036 1.01150 1.22999 1.01683 0.91700 1.01910 1.23142 1.02264 1.01321 0.93681 0.92841 0.92696 0.92712 0.90961 0.91439 0.93166 0.93256 0.91117 0.90995 0.76746 0.92497 0.92966 0.92705 0.92598 0.91592 0.92751 0.91904 0.88259 0.87946 0.87972 0.88336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.19 37.16 0.34 -0.95 16 2 C -0.10 -1.01 2.82 -90.62 -0.26 -1.27 16 3 C -0.15 -1.46 8.41 37.16 0.31 -1.14 16 4 C -0.07 -0.66 4.62 -26.73 -0.12 -0.78 16 5 C -0.15 -1.70 1.57 -155.66 -0.24 -1.95 16 6 C 0.55 8.29 6.12 -10.99 -0.07 8.22 16 7 O -0.54 -10.20 16.69 5.56 0.09 -10.10 16 8 N -0.71 -10.79 4.98 -52.72 -0.26 -11.05 16 9 C 0.14 2.51 3.21 -66.81 -0.21 2.30 16 10 H 0.08 1.52 7.64 -51.93 -0.40 1.12 16 11 C -0.13 -2.54 6.59 -25.62 -0.17 -2.71 16 12 C -0.12 -2.60 5.69 -25.08 -0.14 -2.75 16 13 C 0.04 0.86 2.37 -89.78 -0.21 0.65 16 14 H 0.03 0.67 7.91 -51.93 -0.41 0.26 16 15 C -0.59 -16.18 8.49 -34.44 -0.29 -16.48 16 16 H 0.05 1.31 7.77 -52.49 -0.41 0.90 16 17 C 0.02 0.55 5.36 -17.82 -0.10 0.46 16 18 N -0.91 -27.08 13.49 55.43 0.75 -26.33 16 19 Si 1.07 24.74 29.90 -169.99 -5.08 19.66 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 23 C -0.11 -2.24 5.94 -25.07 -0.15 -2.39 16 24 C -0.15 -1.45 7.84 -26.73 -0.21 -1.66 16 25 C -0.17 -1.55 9.94 -26.73 -0.27 -1.82 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.96 7.44 -51.93 -0.39 0.58 16 30 H 0.07 0.75 5.81 -51.93 -0.30 0.45 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.68 8.14 -51.92 -0.42 0.25 16 34 H 0.07 0.57 8.11 -51.93 -0.42 0.15 16 35 H 0.40 5.23 8.37 -40.82 -0.34 4.89 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.05 0.96 7.92 -51.93 -0.41 0.55 16 38 H 0.05 1.28 8.04 -51.93 -0.42 0.86 16 39 H 0.06 1.35 6.66 -51.92 -0.35 1.00 16 40 H 0.27 8.00 5.55 -40.82 -0.23 7.77 16 41 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 42 H 0.06 1.21 7.63 -51.93 -0.40 0.81 16 43 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.10 0.84 7.65 -51.93 -0.40 0.44 16 45 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 46 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 360.62 15.07 5.43 5.43 Total: -1.00 -30.66 360.62 -9.17 -39.83 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -8.31 Total: 4.82 kcal Atomic # 6 Polarization: -20.47 SS G_CDS: -1.79 Total: -22.26 kcal Atomic # 7 Polarization: -37.87 SS G_CDS: 0.49 Total: -37.38 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.09 Total: -10.10 kcal Atomic # 14 Polarization: 24.74 SS G_CDS: -5.08 Total: 19.66 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.66 -9.17 -39.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452558219.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.972 kcal (2) G-P(sol) polarization free energy of solvation -30.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds