Wall clock time and date at job start Tue Mar 31 2020 01:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47105 * 2 1 4 4 C 1.52999 * 109.47101 * 119.99618 * 2 1 3 5 5 C 1.53002 * 109.47137 * 175.60678 * 4 2 1 6 6 C 1.50694 * 115.55120 * 298.65387 * 5 4 2 7 7 O 1.21279 * 119.99770 * 99.81322 * 6 5 4 8 8 N 1.34778 * 120.00138 * 279.80792 * 6 5 4 9 9 C 1.46499 * 119.99819 * 174.97427 * 8 6 5 10 10 H 1.09001 * 110.05592 * 326.41091 * 9 8 6 11 11 C 1.53873 * 110.03801 * 87.83450 * 9 8 6 12 12 C 1.54257 * 106.59956 * 119.28111 * 11 9 8 13 13 C 1.54890 * 104.19717 * 23.61205 * 12 11 9 14 14 H 1.09000 * 110.91706 * 80.44511 * 13 12 11 15 15 C 1.50704 * 110.75386 * 203.74196 * 13 12 11 16 16 H 1.07996 * 120.00068 * 113.32807 * 15 13 12 17 17 C 1.37874 * 120.00047 * 293.32583 * 15 13 12 18 18 N 1.31524 * 120.00000 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 120.00122 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47314 * 179.97438 * 19 17 15 21 21 H 1.48497 * 109.47341 * 300.00065 * 19 17 15 22 22 H 1.48501 * 109.46926 * 60.00233 * 19 17 15 23 23 C 1.54269 * 110.02905 * 205.00034 * 9 8 6 24 24 C 1.53004 * 117.51608 * 84.36007 * 5 4 2 25 25 C 1.52994 * 60.00042 * 107.47691 * 24 5 4 26 26 H 1.08995 * 109.47351 * 299.99745 * 1 2 3 27 27 H 1.09003 * 109.47028 * 60.00101 * 1 2 3 28 28 H 1.09003 * 109.46768 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47488 * 239.99489 * 2 1 3 30 30 H 1.09002 * 109.47176 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.46590 * 299.99759 * 3 2 1 32 32 H 1.09003 * 109.46554 * 59.99711 * 3 2 1 33 33 H 1.09009 * 109.46927 * 55.60947 * 4 2 1 34 34 H 1.08998 * 109.47769 * 295.61200 * 4 2 1 35 35 H 0.96997 * 119.99764 * 354.96974 * 8 6 5 36 36 H 1.09003 * 110.02924 * 238.56856 * 11 9 8 37 37 H 1.09002 * 110.02779 * 359.94338 * 11 9 8 38 38 H 1.09004 * 110.48653 * 264.92966 * 12 11 9 39 39 H 1.09007 * 110.48824 * 142.29084 * 12 11 9 40 40 H 0.96995 * 119.99569 * 0.02562 * 18 17 15 41 41 H 1.09006 * 110.48855 * 98.42297 * 23 9 8 42 42 H 1.09002 * 110.60085 * 335.83940 * 23 9 8 43 43 H 1.08999 * 117.49371 * 214.97384 * 24 5 4 44 44 H 1.09003 * 117.49636 * 359.97438 * 24 5 4 45 45 H 1.09006 * 117.49827 * 252.50500 * 25 24 5 46 46 H 1.09004 * 117.51849 * 107.48580 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5660 -0.8176 1.1953 6 6 4.1275 -1.5926 0.0313 7 8 4.5545 -1.0042 -0.9395 8 7 4.1553 -2.9395 0.0690 9 6 4.5983 -3.6962 -1.1046 10 1 4.3067 -3.1757 -2.0169 11 6 6.1255 -3.8801 -1.0678 12 6 6.3856 -5.4000 -1.0261 13 6 5.1065 -6.0212 -1.6403 14 1 5.1363 -5.9765 -2.7289 15 6 4.9243 -7.4416 -1.1709 16 1 4.0910 -7.6969 -0.5331 17 6 5.8214 -8.4153 -1.5556 18 7 6.8366 -8.1043 -2.3319 19 14 5.5952 -10.1761 -0.9744 20 1 6.6848 -11.0225 -1.5236 21 1 5.6363 -10.2167 0.5095 22 1 4.2844 -10.6890 -1.4476 23 6 3.9835 -5.1110 -1.0841 24 6 4.3684 0.3849 1.6964 25 6 4.3162 -0.8994 2.5262 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6138 -1.7237 1.2895 34 1 1.7423 -0.1640 2.1375 35 1 3.8822 -3.4079 0.8733 36 1 6.5751 -3.4487 -1.9622 37 1 6.5373 -3.4054 -0.1772 38 1 6.5172 -5.7364 0.0023 39 1 7.2592 -5.6542 -1.6264 40 1 6.9542 -7.1899 -2.6334 41 1 3.1040 -5.1542 -1.7266 42 1 3.7255 -5.4023 -0.0659 43 1 5.3024 0.6155 1.1840 44 1 3.8091 1.2451 2.0643 45 1 3.7226 -0.8842 3.4404 46 1 5.2157 -1.5141 2.5601 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452558219.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:23 Heat of formation + Delta-G solvation = -69.515745 kcal Electronic energy + Delta-G solvation = -22569.756516 eV Core-core repulsion = 19457.645361 eV Total energy + Delta-G solvation = -3112.111155 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.45786 -39.44199 -38.05167 -35.82338 -35.53552 -33.71116 -30.00553 -29.11055 -28.33510 -28.00392 -25.86403 -24.27209 -23.29532 -21.79004 -21.34902 -21.03868 -20.29730 -18.91339 -17.76235 -17.37041 -16.62686 -16.40894 -15.94109 -15.62861 -15.45017 -14.94849 -14.71748 -14.69060 -14.30170 -14.14331 -13.93446 -13.25300 -13.08176 -12.94657 -12.75451 -12.72019 -12.54557 -12.52320 -12.38232 -12.34182 -11.96371 -11.92810 -11.81663 -11.64420 -11.58702 -11.35350 -11.11169 -10.85811 -10.63749 -10.53270 -10.45304 -10.07941 -8.55128 -6.28575 1.55580 1.59000 1.63171 1.81782 2.13526 2.60928 2.71822 3.23473 3.55998 3.66241 3.81630 3.83742 3.90512 3.93476 4.01020 4.10554 4.23200 4.38509 4.51420 4.58034 4.68910 4.72006 4.76604 4.79345 4.80378 4.84465 4.88902 4.90234 4.93977 4.98811 5.02907 5.05833 5.08999 5.14354 5.18049 5.20964 5.34172 5.41733 5.47551 5.49156 5.56437 5.68296 6.12648 6.27011 6.57930 6.67994 7.24941 7.52421 8.83260 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.027571 B = 0.003630 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.323308 B = 7712.477343 C = 7966.750122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.099 4.099 3 C -0.144 4.144 4 C -0.063 4.063 5 C -0.163 4.163 6 C 0.545 3.455 7 O -0.582 6.582 8 N -0.706 5.706 9 C 0.152 3.848 10 H 0.067 0.933 11 C -0.120 4.120 12 C -0.103 4.103 13 C 0.022 3.978 14 H -0.004 1.004 15 C -0.604 4.604 16 H 0.051 0.949 17 C -0.032 4.032 18 N -0.941 5.941 19 Si 1.112 2.888 20 H -0.289 1.289 21 H -0.269 1.269 22 H -0.272 1.272 23 C -0.099 4.099 24 C -0.145 4.145 25 C -0.148 4.148 26 H 0.072 0.928 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.034 0.966 30 H 0.051 0.949 31 H 0.044 0.956 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.101 0.899 35 H 0.411 0.589 36 H 0.052 0.948 37 H 0.064 0.936 38 H 0.047 0.953 39 H 0.031 0.969 40 H 0.261 0.739 41 H 0.059 0.941 42 H 0.075 0.925 43 H 0.079 0.921 44 H 0.126 0.874 45 H 0.132 0.868 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.038 16.960 12.393 23.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.117 4.117 3 C -0.202 4.202 4 C -0.100 4.100 5 C -0.166 4.166 6 C 0.333 3.667 7 O -0.462 6.462 8 N -0.357 5.357 9 C 0.047 3.953 10 H 0.085 0.915 11 C -0.159 4.159 12 C -0.142 4.142 13 C 0.003 3.997 14 H 0.014 0.986 15 C -0.642 4.642 16 H 0.070 0.930 17 C -0.231 4.231 18 N -0.579 5.579 19 Si 0.935 3.065 20 H -0.215 1.215 21 H -0.194 1.194 22 H -0.197 1.197 23 C -0.137 4.137 24 C -0.182 4.182 25 C -0.185 4.185 26 H 0.091 0.909 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.052 0.948 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.119 0.881 35 H 0.248 0.752 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.066 0.934 39 H 0.050 0.950 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.093 0.907 43 H 0.097 0.903 44 H 0.144 0.856 45 H 0.150 0.850 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -10.113 15.865 11.604 22.105 hybrid contribution -0.196 1.127 -0.448 1.229 sum -10.310 16.993 11.156 22.792 Atomic orbital electron populations 1.21805 0.93883 1.01884 1.02417 1.21065 0.96415 0.96924 0.97326 1.21882 1.01214 0.95230 1.01835 1.21152 0.88244 1.01612 0.99019 1.21422 0.96717 1.03982 0.94449 1.20213 0.76740 0.82080 0.87705 1.90658 1.48859 1.70152 1.36532 1.46136 1.66660 1.06035 1.16843 1.21430 0.93578 0.91913 0.88400 0.91478 1.22467 0.95940 0.96437 1.01077 1.22340 0.98931 0.93337 0.99584 1.19720 0.92058 0.94211 0.93685 0.98618 1.22303 1.13447 0.94592 1.33829 0.93023 1.27199 0.92608 1.08880 0.94375 1.70908 1.30747 1.22207 1.34042 0.82987 0.76301 0.70663 0.76574 1.21496 1.19412 1.19729 1.22440 0.97870 0.91825 1.01544 1.23070 1.00855 0.92597 1.01676 1.23265 1.01680 1.00007 0.93556 0.90919 0.92972 0.92848 0.94775 0.93009 0.93664 0.90891 0.90926 0.88085 0.75211 0.92959 0.91694 0.93401 0.95020 0.92852 0.92225 0.90669 0.90254 0.85582 0.84953 0.89085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.19 71.98 0.66 -1.55 16 2 C -0.10 -1.92 2.82 -10.79 -0.03 -1.95 16 3 C -0.14 -2.61 8.41 71.98 0.61 -2.00 16 4 C -0.06 -1.02 4.62 30.59 0.14 -0.88 16 5 C -0.16 -3.28 1.57 -52.93 -0.08 -3.36 16 6 C 0.55 16.14 6.12 87.65 0.54 16.68 16 7 O -0.58 -22.32 16.69 -3.03 -0.05 -22.37 16 8 N -0.71 -20.58 4.98 -439.10 -2.19 -22.77 16 9 C 0.15 5.50 3.21 45.72 0.15 5.64 16 10 H 0.07 2.63 7.64 -2.39 -0.02 2.61 16 11 C -0.12 -4.71 6.59 31.31 0.21 -4.50 16 12 C -0.10 -4.80 5.69 31.67 0.18 -4.62 16 13 C 0.02 1.10 2.37 -10.25 -0.02 1.07 16 14 H 0.00 -0.24 7.91 -2.39 -0.02 -0.26 16 15 C -0.60 -33.05 8.49 25.60 0.22 -32.83 16 16 H 0.05 2.74 7.77 -2.91 -0.02 2.71 16 17 C -0.03 -1.83 5.36 84.65 0.45 -1.38 16 18 N -0.94 -57.34 13.49 21.45 0.29 -57.05 16 19 Si 1.11 49.43 29.90 68.60 2.05 51.48 16 20 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 21 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 22 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 23 C -0.10 -3.88 5.94 31.67 0.19 -3.69 16 24 C -0.14 -2.54 7.84 30.59 0.24 -2.30 16 25 C -0.15 -2.25 9.94 30.59 0.30 -1.95 16 26 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.03 0.91 7.44 -2.39 -0.02 0.90 16 30 H 0.05 1.10 5.81 -2.39 -0.01 1.09 16 31 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 34 H 0.10 1.11 8.11 -2.39 -0.02 1.09 16 35 H 0.41 9.92 8.37 -92.71 -0.78 9.14 16 36 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.06 2.36 7.92 -2.39 -0.02 2.35 16 38 H 0.05 2.25 8.04 -2.38 -0.02 2.23 16 39 H 0.03 1.59 6.66 -2.38 -0.02 1.57 16 40 H 0.26 16.02 5.55 -92.71 -0.51 15.50 16 41 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 42 H 0.07 2.76 7.63 -2.39 -0.02 2.74 16 43 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.13 1.61 7.65 -2.39 -0.02 1.59 16 45 H 0.13 1.27 8.14 -2.38 -0.02 1.25 16 46 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -68.37 360.62 4.26 -64.11 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: 0.42 Total: 24.21 kcal Atomic # 6 Polarization: -41.36 SS G_CDS: 3.74 Total: -37.62 kcal Atomic # 7 Polarization: -77.92 SS G_CDS: -1.90 Total: -79.82 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: -0.05 Total: -22.37 kcal Atomic # 14 Polarization: 49.43 SS G_CDS: 2.05 Total: 51.48 kcal Total: -68.37 4.26 -64.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452558219.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.404 kcal (2) G-P(sol) polarization free energy of solvation -68.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds