Wall clock time and date at job start Tue Mar 31 2020 01:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47082 * 2 1 4 4 C 1.52999 * 109.47321 * 119.99926 * 2 1 3 5 5 H 1.09001 * 113.07664 * 43.79880 * 4 2 1 6 6 N 1.47744 * 113.81304 * 271.90816 * 4 2 1 7 7 C 1.34778 * 134.41798 * 89.74429 * 6 4 2 8 8 O 1.21283 * 119.99878 * 0.04837 * 7 6 4 9 9 C 1.50697 * 120.00012 * 180.02562 * 7 6 4 10 10 C 1.53000 * 109.46942 * 179.97438 * 9 7 6 11 11 C 1.50702 * 109.47241 * 179.97438 * 10 9 7 12 12 H 1.07994 * 119.99778 * 0.02562 * 11 10 9 13 13 C 1.37879 * 119.99973 * 179.97438 * 11 10 9 14 14 N 1.31509 * 119.99982 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99699 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.47246 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.47117 * 120.00108 * 15 13 11 18 18 H 1.48496 * 109.47196 * 240.00225 * 15 13 11 19 19 C 1.47749 * 91.16895 * 269.78062 * 6 4 2 20 20 C 1.53079 * 113.81390 * 175.69264 * 4 2 1 21 21 C 1.53680 * 115.32064 * 207.55421 * 20 4 2 22 22 C 1.55083 * 103.86105 * 153.30366 * 21 20 4 23 23 C 1.54974 * 103.03482 * 323.01231 * 22 21 20 24 24 C 1.53084 * 115.49582 * 334.12545 * 20 4 2 25 25 H 1.08997 * 109.47100 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46739 * 299.99566 * 1 2 3 27 27 H 1.08994 * 109.47480 * 59.99934 * 1 2 3 28 28 H 1.09004 * 109.46787 * 239.99936 * 2 1 3 29 29 H 1.08997 * 109.46708 * 188.37488 * 3 2 1 30 30 H 1.08995 * 109.46743 * 308.36777 * 3 2 1 31 31 H 1.08994 * 109.46742 * 68.36957 * 3 2 1 32 32 H 1.08997 * 109.47111 * 299.99722 * 9 7 6 33 33 H 1.08998 * 109.47578 * 60.00312 * 9 7 6 34 34 H 1.09004 * 109.47568 * 300.00156 * 10 9 7 35 35 H 1.09003 * 109.47128 * 60.00004 * 10 9 7 36 36 H 0.97007 * 119.99665 * 180.02562 * 14 13 11 37 37 H 1.08998 * 113.80974 * 221.75954 * 19 6 4 38 38 H 1.08995 * 113.92277 * 90.22930 * 19 6 4 39 39 H 1.08997 * 110.45054 * 34.77685 * 21 20 4 40 40 H 1.08996 * 110.69741 * 271.94868 * 21 20 4 41 41 H 1.08997 * 110.73762 * 204.57887 * 22 21 20 42 42 H 1.08998 * 110.73188 * 81.44139 * 22 21 20 43 43 H 1.08997 * 110.48017 * 156.10011 * 23 22 21 44 44 H 1.08998 * 110.47706 * 278.59529 * 23 22 21 45 45 H 1.09003 * 110.10101 * 110.81130 * 24 20 4 46 46 H 1.08990 * 110.10661 * 349.18834 * 24 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.5001 -1.6443 1.4600 6 7 2.1965 0.1600 2.4247 7 6 1.3879 0.5379 3.4346 8 8 0.2512 0.1186 3.4907 9 6 1.8964 1.4809 4.4944 10 6 0.7879 1.7463 5.5151 11 6 1.2965 2.6889 6.5754 12 1 2.3089 3.0616 6.5258 13 6 0.4690 3.0761 7.6080 14 7 -0.7639 2.6226 7.6680 15 14 1.0993 4.2451 8.9217 16 1 2.5091 4.6070 8.6272 17 1 0.2652 5.4737 8.9325 18 1 1.0244 3.5842 10.2494 19 6 3.5934 0.4623 2.0501 20 6 3.5627 -0.8709 1.2981 21 6 4.0791 -2.0796 2.0945 22 6 5.4512 -2.3944 1.4439 23 6 5.1992 -2.1097 -0.0585 24 6 4.2682 -0.8767 -0.0604 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 3.1197 1.4461 -0.1497 30 1 1.5597 1.9976 -0.8057 31 1 1.8040 1.9113 0.9553 32 1 2.7542 1.0342 4.9970 33 1 2.1957 2.4210 4.0311 34 1 -0.0697 2.1932 5.0123 35 1 0.4881 0.8064 5.9787 36 1 -1.3462 2.8954 8.3943 37 1 4.2824 0.4754 2.8946 38 1 3.6987 1.3314 1.4009 39 1 3.4009 -2.9258 1.9848 40 1 4.2047 -1.8228 3.1463 41 1 5.7211 -3.4391 1.5986 42 1 6.2250 -1.7351 1.8370 43 1 6.1365 -1.8807 -0.5657 44 1 4.7091 -2.9609 -0.5310 45 1 4.8539 0.0345 -0.1823 46 1 3.5355 -0.9619 -0.8628 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457150213.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:14 Heat of formation + Delta-G solvation = -26.447651 kcal Electronic energy + Delta-G solvation = -22985.245428 eV Core-core repulsion = 19875.001846 eV Total energy + Delta-G solvation = -3110.243582 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.40399 -38.09250 -36.06156 -33.88602 -33.39754 -30.99634 -29.34173 -28.90615 -27.52428 -26.07535 -25.67835 -24.22529 -21.63515 -20.92118 -20.16445 -18.75385 -17.92850 -16.82732 -16.18833 -16.13223 -15.82824 -14.80823 -14.73046 -14.40444 -14.16163 -14.05674 -13.62146 -13.14594 -12.84776 -12.69503 -12.25778 -12.16190 -12.00955 -11.88595 -11.68384 -11.36572 -11.31208 -11.21484 -11.02337 -10.93406 -10.89279 -10.78204 -10.66016 -10.59209 -10.51079 -10.18198 -9.92436 -9.61311 -9.10348 -8.87912 -8.32922 -8.24530 -5.94051 -3.98234 3.12598 3.33359 3.34109 3.40689 3.44196 4.10307 4.35493 4.46418 4.50690 4.75567 4.86498 4.91866 4.94422 5.13681 5.21317 5.28215 5.33493 5.40892 5.45104 5.48153 5.52453 5.63375 5.68758 5.71393 5.74862 5.76591 5.80976 5.91274 5.92787 5.98602 6.02599 6.09982 6.13072 6.18975 6.21519 6.28117 6.31276 6.41119 6.50494 6.96137 7.77170 7.89482 8.09178 8.15679 8.41672 8.85367 9.10621 9.65147 11.16970 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.022681 B = 0.004081 C = 0.003739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.190135 B = 6859.637828 C = 7487.260246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.096 4.096 3 C -0.151 4.151 4 C 0.146 3.854 5 H 0.084 0.916 6 N -0.641 5.641 7 C 0.532 3.468 8 O -0.533 6.533 9 C -0.123 4.123 10 C 0.037 3.963 11 C -0.525 4.525 12 H 0.056 0.944 13 C 0.058 3.942 14 N -0.890 5.890 15 Si 0.892 3.108 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 C 0.103 3.897 20 C -0.092 4.092 21 C -0.099 4.099 22 C -0.124 4.124 23 C -0.124 4.124 24 C -0.114 4.114 25 H 0.052 0.948 26 H 0.064 0.936 27 H 0.052 0.948 28 H 0.082 0.918 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.022 0.978 35 H 0.023 0.977 36 H 0.260 0.740 37 H 0.078 0.922 38 H 0.092 0.908 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.067 0.933 43 H 0.063 0.937 44 H 0.064 0.936 45 H 0.069 0.931 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.007 -8.214 -19.061 24.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.115 4.115 3 C -0.209 4.209 4 C 0.043 3.957 5 H 0.102 0.898 6 N -0.379 5.379 7 C 0.324 3.676 8 O -0.408 6.408 9 C -0.163 4.163 10 C 0.000 4.000 11 C -0.564 4.564 12 H 0.074 0.926 13 C -0.144 4.144 14 N -0.528 5.528 15 Si 0.720 3.280 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.210 1.210 19 C -0.020 4.020 20 C -0.093 4.093 21 C -0.137 4.137 22 C -0.161 4.161 23 C -0.161 4.161 24 C -0.152 4.152 25 H 0.072 0.928 26 H 0.083 0.917 27 H 0.071 0.929 28 H 0.100 0.900 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.041 0.959 35 H 0.041 0.959 36 H 0.070 0.930 37 H 0.096 0.904 38 H 0.110 0.890 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.088 0.912 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 12.061 -8.354 -18.704 23.772 hybrid contribution 0.224 0.731 0.814 1.117 sum 12.285 -7.623 -17.891 23.002 Atomic orbital electron populations 1.21807 0.94489 1.01858 1.02234 1.21321 0.96509 0.96725 0.96937 1.22086 1.00550 0.95806 1.02411 1.22580 0.94273 0.93221 0.85659 0.89757 1.50349 1.14008 1.49285 1.24213 1.21280 0.84416 0.80676 0.81225 1.90666 1.18480 1.55633 1.76033 1.21804 1.02504 0.96547 0.95397 1.18904 0.92111 0.97297 0.91693 1.21255 0.98567 1.27804 1.08727 0.92620 1.25023 0.94878 0.96445 0.98028 1.70013 1.06294 1.44313 1.32221 0.86545 0.78893 0.80830 0.81755 1.19754 1.21018 1.21008 1.23502 0.83539 0.96842 0.98092 1.22504 0.94956 0.95917 0.95884 1.22114 0.96210 0.96219 0.99132 1.22536 0.97204 1.01130 0.95281 1.22398 0.99197 0.97940 0.96608 1.22132 0.98308 0.98518 0.96228 0.92846 0.91720 0.92939 0.89964 0.92161 0.92995 0.91835 0.90595 0.90623 0.95910 0.95879 0.93033 0.90404 0.89040 0.91198 0.91040 0.91711 0.91432 0.91836 0.91761 0.91224 0.90734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.18 37.16 0.34 -1.51 16 2 C -0.10 -1.04 2.48 -90.62 -0.23 -1.27 16 3 C -0.15 -1.62 7.49 37.16 0.28 -1.34 16 4 C 0.15 1.83 3.86 -67.21 -0.26 1.57 16 5 H 0.08 1.17 8.03 -51.93 -0.42 0.75 16 6 N -0.64 -9.78 2.36 -174.89 -0.41 -10.19 16 7 C 0.53 10.91 8.05 -10.99 -0.09 10.82 16 8 O -0.53 -13.17 16.63 5.55 0.09 -13.08 16 9 C -0.12 -2.64 5.39 -27.88 -0.15 -2.79 16 10 C 0.04 1.04 4.26 -27.88 -0.12 0.92 16 11 C -0.53 -15.23 9.11 -34.44 -0.31 -15.54 16 12 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 13 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 14 N -0.89 -27.86 13.29 55.43 0.74 -27.13 16 15 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 16 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 18 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 19 C 0.10 1.16 6.77 -3.31 -0.02 1.14 16 20 C -0.09 -0.90 1.05 -154.16 -0.16 -1.06 16 21 C -0.10 -0.97 6.20 -25.28 -0.16 -1.12 16 22 C -0.12 -0.95 6.90 -24.59 -0.17 -1.12 16 23 C -0.12 -0.85 6.85 -24.90 -0.17 -1.02 16 24 C -0.11 -0.85 4.95 -25.90 -0.13 -0.98 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.06 1.06 8.06 -51.93 -0.42 0.64 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.08 0.72 6.16 -51.93 -0.32 0.40 16 29 H 0.06 0.53 5.13 -51.93 -0.27 0.26 16 30 H 0.05 0.52 8.13 -51.93 -0.42 0.09 16 31 H 0.06 0.85 6.69 -51.93 -0.35 0.51 16 32 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 33 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 34 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 35 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 36 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 37 H 0.08 0.85 8.00 -51.93 -0.42 0.44 16 38 H 0.09 0.91 5.00 -51.93 -0.26 0.65 16 39 H 0.07 0.70 8.04 -51.93 -0.42 0.28 16 40 H 0.07 0.78 7.87 -51.93 -0.41 0.37 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.07 0.48 7.59 -51.93 -0.39 0.08 16 46 H 0.07 0.53 5.67 -51.93 -0.29 0.24 16 LS Contribution 352.90 15.07 5.32 5.32 Total: -1.00 -33.77 352.90 -8.88 -42.65 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -8.15 Total: -2.81 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: -1.44 Total: -11.70 kcal Atomic # 7 Polarization: -37.64 SS G_CDS: 0.32 Total: -37.32 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: 0.09 Total: -13.08 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.77 -8.88 -42.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457150213.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.204 kcal (2) G-P(sol) polarization free energy of solvation -33.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds