Wall clock time and date at job start Tue Mar 31 2020 01:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47082 * 2 1 4 4 C 1.52999 * 109.47321 * 119.99926 * 2 1 3 5 5 H 1.09001 * 113.07664 * 43.79880 * 4 2 1 6 6 N 1.47744 * 113.81304 * 271.90816 * 4 2 1 7 7 C 1.34778 * 134.41798 * 89.74429 * 6 4 2 8 8 O 1.21283 * 119.99878 * 0.04837 * 7 6 4 9 9 C 1.50697 * 120.00012 * 180.02562 * 7 6 4 10 10 C 1.53000 * 109.46942 * 179.97438 * 9 7 6 11 11 C 1.50702 * 109.47241 * 179.97438 * 10 9 7 12 12 H 1.07994 * 119.99778 * 0.02562 * 11 10 9 13 13 C 1.37879 * 119.99973 * 179.97438 * 11 10 9 14 14 N 1.31509 * 119.99982 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99699 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.47246 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.47117 * 120.00108 * 15 13 11 18 18 H 1.48496 * 109.47196 * 240.00225 * 15 13 11 19 19 C 1.47749 * 91.16895 * 269.78062 * 6 4 2 20 20 C 1.53079 * 113.81390 * 175.69264 * 4 2 1 21 21 C 1.53680 * 115.32064 * 207.55421 * 20 4 2 22 22 C 1.55083 * 103.86105 * 153.30366 * 21 20 4 23 23 C 1.54974 * 103.03482 * 323.01231 * 22 21 20 24 24 C 1.53084 * 115.49582 * 334.12545 * 20 4 2 25 25 H 1.08997 * 109.47100 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46739 * 299.99566 * 1 2 3 27 27 H 1.08994 * 109.47480 * 59.99934 * 1 2 3 28 28 H 1.09004 * 109.46787 * 239.99936 * 2 1 3 29 29 H 1.08997 * 109.46708 * 188.37488 * 3 2 1 30 30 H 1.08995 * 109.46743 * 308.36777 * 3 2 1 31 31 H 1.08994 * 109.46742 * 68.36957 * 3 2 1 32 32 H 1.08997 * 109.47111 * 299.99722 * 9 7 6 33 33 H 1.08998 * 109.47578 * 60.00312 * 9 7 6 34 34 H 1.09004 * 109.47568 * 300.00156 * 10 9 7 35 35 H 1.09003 * 109.47128 * 60.00004 * 10 9 7 36 36 H 0.97007 * 119.99665 * 180.02562 * 14 13 11 37 37 H 1.08998 * 113.80974 * 221.75954 * 19 6 4 38 38 H 1.08995 * 113.92277 * 90.22930 * 19 6 4 39 39 H 1.08997 * 110.45054 * 34.77685 * 21 20 4 40 40 H 1.08996 * 110.69741 * 271.94868 * 21 20 4 41 41 H 1.08997 * 110.73762 * 204.57887 * 22 21 20 42 42 H 1.08998 * 110.73188 * 81.44139 * 22 21 20 43 43 H 1.08997 * 110.48017 * 156.10011 * 23 22 21 44 44 H 1.08998 * 110.47706 * 278.59529 * 23 22 21 45 45 H 1.09003 * 110.10101 * 110.81130 * 24 20 4 46 46 H 1.08990 * 110.10661 * 349.18834 * 24 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.5001 -1.6443 1.4600 6 7 2.1965 0.1600 2.4247 7 6 1.3879 0.5379 3.4346 8 8 0.2512 0.1186 3.4907 9 6 1.8964 1.4809 4.4944 10 6 0.7879 1.7463 5.5151 11 6 1.2965 2.6889 6.5754 12 1 2.3089 3.0616 6.5258 13 6 0.4690 3.0761 7.6080 14 7 -0.7639 2.6226 7.6680 15 14 1.0993 4.2451 8.9217 16 1 2.5091 4.6070 8.6272 17 1 0.2652 5.4737 8.9325 18 1 1.0244 3.5842 10.2494 19 6 3.5934 0.4623 2.0501 20 6 3.5627 -0.8709 1.2981 21 6 4.0791 -2.0796 2.0945 22 6 5.4512 -2.3944 1.4439 23 6 5.1992 -2.1097 -0.0585 24 6 4.2682 -0.8767 -0.0604 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 3.1197 1.4461 -0.1497 30 1 1.5597 1.9976 -0.8057 31 1 1.8040 1.9113 0.9553 32 1 2.7542 1.0342 4.9970 33 1 2.1957 2.4210 4.0311 34 1 -0.0697 2.1932 5.0123 35 1 0.4881 0.8064 5.9787 36 1 -1.3462 2.8954 8.3943 37 1 4.2824 0.4754 2.8946 38 1 3.6987 1.3314 1.4009 39 1 3.4009 -2.9258 1.9848 40 1 4.2047 -1.8228 3.1463 41 1 5.7211 -3.4391 1.5986 42 1 6.2250 -1.7351 1.8370 43 1 6.1365 -1.8807 -0.5657 44 1 4.7091 -2.9609 -0.5310 45 1 4.8539 0.0345 -0.1823 46 1 3.5355 -0.9619 -0.8628 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457150213.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:14 Heat of formation + Delta-G solvation = -46.133167 kcal Electronic energy + Delta-G solvation = -22986.099056 eV Core-core repulsion = 19875.001846 eV Total energy + Delta-G solvation = -3111.097210 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.43419 -39.63828 -36.90868 -35.59676 -34.93301 -33.02301 -30.50053 -29.67668 -28.45064 -27.70133 -26.89344 -25.47947 -23.32883 -21.89889 -21.04145 -20.07877 -18.93296 -18.73486 -17.53403 -17.21386 -17.06336 -16.48889 -16.10330 -15.90049 -15.46746 -14.97023 -14.49939 -14.31051 -14.14889 -14.00496 -13.94302 -13.57826 -13.28346 -12.96618 -12.87441 -12.85449 -12.60238 -12.46228 -12.17956 -12.03537 -11.99655 -11.87562 -11.71060 -11.68763 -11.57507 -11.53453 -11.31623 -11.28776 -11.03271 -10.61285 -10.51976 -9.53297 -8.21031 -6.36006 1.39618 1.41818 1.55179 1.69577 1.92161 2.40624 3.11632 3.20863 3.55052 3.65614 3.87570 3.92256 3.95696 4.06512 4.26403 4.37519 4.42715 4.44316 4.50741 4.54011 4.60357 4.68328 4.71303 4.77751 4.80762 4.87737 4.91253 4.95565 5.00773 5.04740 5.08654 5.15902 5.20132 5.21786 5.30602 5.32207 5.40923 5.43106 5.45689 5.56347 5.57034 5.59557 5.80256 6.13531 6.75174 6.84420 7.28662 7.34893 8.92095 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.022681 B = 0.004081 C = 0.003739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.190135 B = 6859.637828 C = 7487.260246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 C -0.149 4.149 4 C 0.137 3.863 5 H 0.063 0.937 6 N -0.638 5.638 7 C 0.528 3.472 8 O -0.593 6.593 9 C -0.110 4.110 10 C 0.046 3.954 11 C -0.543 4.543 12 H 0.075 0.925 13 C -0.007 4.007 14 N -0.938 5.938 15 Si 0.977 3.023 16 H -0.252 1.252 17 H -0.279 1.279 18 H -0.279 1.279 19 C 0.099 3.901 20 C -0.074 4.074 21 C -0.106 4.106 22 C -0.119 4.119 23 C -0.120 4.120 24 C -0.109 4.109 25 H 0.052 0.948 26 H 0.016 0.984 27 H 0.072 0.928 28 H 0.120 0.880 29 H 0.088 0.912 30 H 0.062 0.938 31 H 0.029 0.971 32 H 0.095 0.905 33 H 0.095 0.905 34 H -0.021 1.021 35 H -0.021 1.021 36 H 0.263 0.737 37 H 0.085 0.915 38 H 0.115 0.885 39 H 0.061 0.939 40 H 0.053 0.947 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.080 0.920 44 H 0.066 0.934 45 H 0.088 0.912 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.751 -7.454 -20.992 27.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 C -0.206 4.206 4 C 0.034 3.966 5 H 0.081 0.919 6 N -0.372 5.372 7 C 0.319 3.681 8 O -0.474 6.474 9 C -0.150 4.150 10 C 0.008 3.992 11 C -0.581 4.581 12 H 0.093 0.907 13 C -0.204 4.204 14 N -0.578 5.578 15 Si 0.800 3.200 16 H -0.176 1.176 17 H -0.204 1.204 18 H -0.204 1.204 19 C -0.022 4.022 20 C -0.075 4.075 21 C -0.144 4.144 22 C -0.156 4.156 23 C -0.157 4.157 24 C -0.147 4.147 25 H 0.071 0.929 26 H 0.036 0.964 27 H 0.091 0.909 28 H 0.137 0.863 29 H 0.107 0.893 30 H 0.081 0.919 31 H 0.049 0.951 32 H 0.113 0.887 33 H 0.114 0.886 34 H -0.002 1.002 35 H -0.002 1.002 36 H 0.072 0.928 37 H 0.104 0.896 38 H 0.133 0.867 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.099 0.901 44 H 0.085 0.915 45 H 0.106 0.894 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 15.880 -7.604 -20.691 27.168 hybrid contribution -0.963 0.416 1.358 1.716 sum 14.917 -7.188 -19.333 25.455 Atomic orbital electron populations 1.21806 0.96304 1.01420 1.00798 1.21364 0.94922 0.97378 0.97199 1.22073 1.02478 0.95028 1.01021 1.22918 0.96541 0.92071 0.85061 0.91869 1.50339 1.15159 1.48268 1.23454 1.20984 0.84067 0.80537 0.82485 1.90633 1.21044 1.57973 1.77757 1.21526 1.00504 0.98203 0.94732 1.18659 0.92859 0.94763 0.92878 1.21705 0.99462 1.27895 1.09048 0.90719 1.26174 0.94882 0.98412 1.00953 1.70197 1.08130 1.46059 1.33416 0.85231 0.79134 0.77828 0.77786 1.17550 1.20439 1.20446 1.23910 0.80766 0.98630 0.98932 1.22385 0.92593 0.94927 0.97567 1.22160 0.97778 0.96007 0.98446 1.22518 0.95600 1.01665 0.95856 1.22393 0.99834 0.97682 0.95795 1.22156 0.98582 0.99827 0.94131 0.92893 0.96449 0.90928 0.86276 0.89304 0.91895 0.95143 0.88718 0.88643 1.00221 1.00231 0.92787 0.89624 0.86719 0.91995 0.92790 0.91217 0.90828 0.90139 0.91486 0.89356 0.89676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.75 9.18 71.98 0.66 -3.09 16 2 C -0.09 -1.80 2.48 -10.79 -0.03 -1.83 16 3 C -0.15 -2.82 7.49 71.98 0.54 -2.28 16 4 C 0.14 3.36 3.86 44.78 0.17 3.53 16 5 H 0.06 1.82 8.03 -2.39 -0.02 1.80 16 6 N -0.64 -19.68 2.36 -825.63 -1.95 -21.63 16 7 C 0.53 22.90 8.05 87.66 0.71 23.61 16 8 O -0.59 -32.02 16.63 -3.04 -0.05 -32.07 16 9 C -0.11 -4.89 5.39 29.85 0.16 -4.73 16 10 C 0.05 2.72 4.26 29.85 0.13 2.85 16 11 C -0.54 -32.19 9.11 25.60 0.23 -31.96 16 12 H 0.07 4.05 7.74 -2.91 -0.02 4.02 16 13 C -0.01 -0.41 5.46 84.66 0.46 0.05 16 14 N -0.94 -61.17 13.29 21.45 0.28 -60.89 16 15 Si 0.98 45.32 29.54 68.60 2.03 47.35 16 16 H -0.25 -10.77 7.11 99.48 0.71 -10.06 16 17 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 18 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 19 C 0.10 2.01 6.77 86.17 0.58 2.59 16 20 C -0.07 -1.28 1.05 -51.82 -0.05 -1.33 16 21 C -0.11 -1.93 6.20 31.54 0.20 -1.73 16 22 C -0.12 -1.47 6.90 31.98 0.22 -1.25 16 23 C -0.12 -1.13 6.85 31.78 0.22 -0.92 16 24 C -0.11 -1.14 4.95 31.13 0.15 -0.98 16 25 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.02 0.59 8.06 -2.39 -0.02 0.57 16 27 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.12 1.60 6.16 -2.38 -0.01 1.59 16 29 H 0.09 1.15 5.13 -2.39 -0.01 1.14 16 30 H 0.06 1.08 8.13 -2.39 -0.02 1.06 16 31 H 0.03 0.78 6.69 -2.39 -0.02 0.77 16 32 H 0.09 3.80 8.14 -2.39 -0.02 3.78 16 33 H 0.10 3.82 8.14 -2.39 -0.02 3.80 16 34 H -0.02 -1.38 8.10 -2.39 -0.02 -1.40 16 35 H -0.02 -1.39 8.10 -2.39 -0.02 -1.40 16 36 H 0.26 15.97 8.31 -92.70 -0.77 15.20 16 37 H 0.09 1.66 8.00 -2.39 -0.02 1.64 16 38 H 0.12 1.87 5.00 -2.39 -0.01 1.86 16 39 H 0.06 1.22 8.04 -2.39 -0.02 1.20 16 40 H 0.05 1.16 7.87 -2.39 -0.02 1.14 16 41 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.07 0.84 8.14 -2.39 -0.02 0.83 16 43 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 44 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 45 H 0.09 0.68 7.59 -2.39 -0.02 0.66 16 46 H 0.08 0.76 5.67 -2.39 -0.01 0.75 16 Total: -1.00 -80.45 352.90 5.59 -74.85 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: 0.93 Total: 9.86 kcal Atomic # 6 Polarization: -21.82 SS G_CDS: 4.35 Total: -17.47 kcal Atomic # 7 Polarization: -80.85 SS G_CDS: -1.67 Total: -82.51 kcal Atomic # 8 Polarization: -32.02 SS G_CDS: -0.05 Total: -32.07 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -80.45 5.59 -74.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457150213.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.722 kcal (2) G-P(sol) polarization free energy of solvation -80.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds