Wall clock time and date at job start Tue Mar 31 2020 01:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46810 * 2 1 4 4 C 1.52995 * 109.47176 * 119.99998 * 2 1 3 5 5 H 1.09005 * 112.81723 * 282.81260 * 4 2 1 6 6 N 1.47244 * 113.50865 * 53.72674 * 4 2 1 7 7 C 1.34778 * 135.94771 * 268.43674 * 6 4 2 8 8 O 1.21281 * 119.99569 * 359.63146 * 7 6 4 9 9 C 1.50698 * 120.00146 * 179.63446 * 7 6 4 10 10 C 1.53005 * 109.47105 * 180.02562 * 9 7 6 11 11 C 1.50698 * 109.47105 * 180.02562 * 10 9 7 12 12 H 1.08002 * 120.00134 * 359.97438 * 11 10 9 13 13 C 1.37876 * 120.00006 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99765 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 120.00172 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.47321 * 59.99883 * 15 13 11 17 17 H 1.48503 * 109.47209 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.46972 * 299.99836 * 15 13 11 19 19 C 1.47257 * 88.10935 * 88.18327 * 6 4 2 20 20 C 1.52496 * 87.73635 * 26.53518 * 19 6 4 21 21 C 1.53343 * 115.83598 * 218.59561 * 20 19 6 22 22 C 1.55115 * 103.91813 * 205.24568 * 21 20 19 23 23 C 1.54968 * 102.89440 * 37.09111 * 22 21 20 24 24 C 1.52959 * 116.07783 * 90.86209 * 20 19 6 25 25 H 1.08999 * 109.47259 * 299.99974 * 1 2 3 26 26 H 1.08999 * 109.47367 * 59.99906 * 1 2 3 27 27 H 1.08994 * 109.47188 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46764 * 240.00124 * 2 1 3 29 29 H 1.09002 * 109.47053 * 173.33656 * 3 2 1 30 30 H 1.09004 * 109.46999 * 293.33442 * 3 2 1 31 31 H 1.08998 * 109.47479 * 53.33669 * 3 2 1 32 32 H 1.09000 * 109.47121 * 299.99524 * 9 7 6 33 33 H 1.08997 * 109.47508 * 60.00204 * 9 7 6 34 34 H 1.09000 * 109.46460 * 299.99583 * 10 9 7 35 35 H 1.08997 * 109.47052 * 59.99580 * 10 9 7 36 36 H 0.97004 * 119.99846 * 179.97438 * 14 13 11 37 37 H 1.09002 * 113.50758 * 141.25296 * 19 6 4 38 38 H 1.09002 * 113.50354 * 271.74968 * 19 6 4 39 39 H 1.09008 * 110.53962 * 323.84977 * 21 20 19 40 40 H 1.08997 * 110.54249 * 86.63212 * 21 20 19 41 41 H 1.09007 * 110.72775 * 278.74248 * 22 21 20 42 42 H 1.09002 * 110.88539 * 155.51547 * 22 21 20 43 43 H 1.09010 * 110.47886 * 203.87743 * 23 22 21 44 44 H 1.09000 * 110.58859 * 81.31469 * 23 22 21 45 45 H 1.08993 * 110.11581 * 250.54120 * 24 20 19 46 46 H 1.09001 * 110.11451 * 12.12984 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.9708 -0.1092 2.1485 6 7 1.4826 -2.0740 1.4151 7 6 0.4174 -2.6127 2.0409 8 8 -0.3443 -1.9021 2.6619 9 6 0.1730 -4.0980 1.9690 10 6 -1.0915 -4.4455 2.7573 11 6 -1.3356 -5.9308 2.6859 12 1 -0.6570 -6.5637 2.1332 13 6 -2.4253 -6.4819 3.3262 14 7 -3.2513 -5.7114 3.9996 15 14 -2.7283 -8.3230 3.2372 16 1 -1.5678 -9.0444 3.8187 17 1 -3.9555 -8.6603 4.0024 18 1 -2.9029 -8.7279 1.8191 19 6 2.5945 -2.5800 0.5928 20 6 3.4071 -1.3768 1.0590 21 6 4.3120 -0.7316 0.0024 22 6 5.4290 -0.0489 0.8344 23 6 5.6570 -1.0503 1.9948 24 6 4.2428 -1.5791 2.3241 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1234 1.4449 0.1192 30 1 1.7772 1.9208 -0.9437 31 1 1.5825 1.9897 0.8243 32 1 0.0449 -4.3952 0.9281 33 1 1.0246 -4.6275 2.3959 34 1 -0.9638 -4.1482 3.7982 35 1 -1.9430 -3.9159 2.3300 36 1 -4.0181 -6.0990 4.4498 37 1 2.9923 -3.5339 0.9392 38 1 2.3820 -2.5748 -0.4763 39 1 4.7349 -1.4917 -0.6546 40 1 3.7582 0.0088 -0.5748 41 1 5.0911 0.9144 1.2168 42 1 6.3369 0.0694 0.2428 43 1 6.0848 -0.5418 2.8589 44 1 6.3045 -1.8667 1.6749 45 1 3.8141 -1.0130 3.1510 46 1 4.2874 -2.6381 2.5785 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457150219.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:18 Heat of formation + Delta-G solvation = -29.984081 kcal Electronic energy + Delta-G solvation = -22871.344913 eV Core-core repulsion = 19760.947980 eV Total energy + Delta-G solvation = -3110.396933 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.40182 -38.13687 -35.95086 -34.37906 -33.40574 -31.01563 -29.44878 -28.88274 -27.04242 -26.17549 -25.45711 -24.39955 -21.76506 -21.08619 -20.10921 -18.85951 -17.86539 -16.92020 -16.27257 -15.97564 -15.57330 -15.07545 -14.70258 -14.38964 -14.11778 -14.07446 -13.66152 -13.22886 -13.00830 -12.53573 -12.25417 -12.20656 -12.08247 -11.90821 -11.59332 -11.35134 -11.26535 -11.20579 -11.07838 -11.01130 -10.94789 -10.89366 -10.73320 -10.60923 -10.58986 -10.03617 -9.92120 -9.61938 -9.13450 -8.91979 -8.34529 -8.26772 -5.93832 -3.98278 3.13223 3.32851 3.35703 3.40228 3.42228 4.05152 4.33076 4.45887 4.49803 4.75864 4.85349 4.93259 4.97536 5.09007 5.22387 5.26904 5.32995 5.40840 5.42321 5.46635 5.53052 5.55389 5.62554 5.69984 5.74061 5.77247 5.77942 5.88277 5.93332 5.94615 6.00986 6.06521 6.13745 6.18608 6.21209 6.26794 6.33398 6.41566 6.45312 6.95021 7.76280 7.89033 8.09067 8.17145 8.41330 8.83516 9.10016 9.64965 11.17117 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.024869 B = 0.003918 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.627772 B = 7145.235222 C = 7797.205438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.096 4.096 3 C -0.149 4.149 4 C 0.146 3.854 5 H 0.081 0.919 6 N -0.647 5.647 7 C 0.539 3.461 8 O -0.531 6.531 9 C -0.122 4.122 10 C 0.038 3.962 11 C -0.527 4.527 12 H 0.055 0.945 13 C 0.058 3.942 14 N -0.890 5.890 15 Si 0.893 3.107 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 C 0.111 3.889 20 C -0.094 4.094 21 C -0.119 4.119 22 C -0.123 4.123 23 C -0.123 4.123 24 C -0.097 4.097 25 H 0.057 0.943 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.023 0.977 35 H 0.023 0.977 36 H 0.261 0.739 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.083 0.917 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.065 0.935 45 H 0.068 0.932 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.923 12.601 -10.101 24.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.116 4.116 3 C -0.207 4.207 4 C 0.042 3.958 5 H 0.099 0.901 6 N -0.384 5.384 7 C 0.331 3.669 8 O -0.406 6.406 9 C -0.162 4.162 10 C 0.001 3.999 11 C -0.565 4.565 12 H 0.073 0.927 13 C -0.143 4.143 14 N -0.528 5.528 15 Si 0.721 3.279 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.203 1.203 19 C -0.012 4.012 20 C -0.095 4.095 21 C -0.157 4.157 22 C -0.161 4.161 23 C -0.161 4.161 24 C -0.135 4.135 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.093 0.907 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.041 0.959 35 H 0.041 0.959 36 H 0.071 0.929 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.101 0.899 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.086 0.914 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 18.093 12.847 -9.492 24.135 hybrid contribution -0.323 -1.132 -0.053 1.178 sum 17.770 11.715 -9.544 23.326 Atomic orbital electron populations 1.21718 0.94162 1.02487 1.01485 1.21309 0.96792 0.96072 0.97388 1.21942 1.01286 0.95409 1.02022 1.22447 0.89028 0.86562 0.97774 0.90125 1.50035 1.26725 1.09293 1.52315 1.21186 0.77065 0.91641 0.76972 1.90674 1.44368 1.63531 1.42014 1.21813 1.03134 0.88386 1.02861 1.18898 0.89966 0.95744 0.95334 1.21178 1.10003 0.92755 1.32596 0.92716 1.25018 0.96066 0.97922 0.95319 1.69993 1.14525 1.35065 1.33263 0.86653 0.77560 0.85639 0.78078 1.20245 1.21266 1.20257 1.22921 0.84688 0.97826 0.95795 1.22215 0.93591 0.96818 0.96897 1.22411 0.96236 0.99998 0.97067 1.22513 0.98261 0.98495 0.96805 1.22414 0.96709 0.98665 0.98293 1.21782 0.94063 1.01796 0.95830 0.92375 0.93018 0.92460 0.90699 0.91822 0.92476 0.92466 0.90564 0.90539 0.95854 0.95883 0.92908 0.90445 0.90223 0.91046 0.89888 0.91534 0.91712 0.91800 0.91619 0.91357 0.91140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 8.95 37.16 0.33 -1.58 16 2 C -0.10 -1.05 2.04 -90.62 -0.19 -1.23 16 3 C -0.15 -1.29 8.62 37.16 0.32 -0.97 16 4 C 0.15 1.84 3.30 -71.66 -0.24 1.60 16 5 H 0.08 1.14 7.91 -51.93 -0.41 0.73 16 6 N -0.65 -10.04 2.89 -177.22 -0.51 -10.56 16 7 C 0.54 11.13 7.30 -10.99 -0.08 11.05 16 8 O -0.53 -13.15 16.76 5.56 0.09 -13.06 16 9 C -0.12 -2.64 5.46 -27.88 -0.15 -2.79 16 10 C 0.04 1.06 4.26 -27.88 -0.12 0.94 16 11 C -0.53 -15.30 9.11 -34.44 -0.31 -15.61 16 12 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 13 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 14 N -0.89 -27.87 13.29 55.43 0.74 -27.13 16 15 Si 0.89 21.98 29.54 -169.99 -5.02 16.95 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 19 C 0.11 1.27 7.30 -7.92 -0.06 1.22 16 20 C -0.09 -0.94 1.16 -154.72 -0.18 -1.12 16 21 C -0.12 -0.89 5.31 -25.44 -0.14 -1.03 16 22 C -0.12 -0.85 6.84 -24.57 -0.17 -1.02 16 23 C -0.12 -0.95 6.85 -24.89 -0.17 -1.12 16 24 C -0.10 -0.96 6.33 -25.95 -0.16 -1.13 16 25 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.93 7.06 -51.93 -0.37 0.57 16 28 H 0.07 0.74 6.30 -51.93 -0.33 0.41 16 29 H 0.06 0.47 5.69 -51.93 -0.30 0.18 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 33 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 34 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 35 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 36 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 37 H 0.08 0.85 7.91 -51.93 -0.41 0.44 16 38 H 0.08 0.80 7.51 -51.93 -0.39 0.41 16 39 H 0.07 0.49 8.13 -51.92 -0.42 0.06 16 40 H 0.08 0.59 4.09 -51.93 -0.21 0.38 16 41 H 0.07 0.46 7.84 -51.92 -0.41 0.05 16 42 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.06 0.47 8.14 -51.92 -0.42 0.04 16 44 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.07 0.76 7.82 -51.93 -0.41 0.35 16 46 H 0.07 0.73 7.79 -51.93 -0.40 0.33 16 LS Contribution 355.68 15.07 5.36 5.36 Total: -1.00 -33.74 355.68 -8.99 -42.74 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -8.24 Total: -3.14 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: -1.41 Total: -11.17 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: 0.22 Total: -37.69 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: 0.09 Total: -13.06 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.74 -8.99 -42.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457150219.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.751 kcal (2) G-P(sol) polarization free energy of solvation -33.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds