Wall clock time and date at job start Tue Mar 31 2020 01:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46810 * 2 1 4 4 C 1.52995 * 109.47176 * 119.99998 * 2 1 3 5 5 H 1.09005 * 112.81723 * 282.81260 * 4 2 1 6 6 N 1.47244 * 113.50865 * 53.72674 * 4 2 1 7 7 C 1.34778 * 135.94771 * 268.43674 * 6 4 2 8 8 O 1.21281 * 119.99569 * 359.63146 * 7 6 4 9 9 C 1.50698 * 120.00146 * 179.63446 * 7 6 4 10 10 C 1.53005 * 109.47105 * 180.02562 * 9 7 6 11 11 C 1.50698 * 109.47105 * 180.02562 * 10 9 7 12 12 H 1.08002 * 120.00134 * 359.97438 * 11 10 9 13 13 C 1.37876 * 120.00006 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99765 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 120.00172 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.47321 * 59.99883 * 15 13 11 17 17 H 1.48503 * 109.47209 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.46972 * 299.99836 * 15 13 11 19 19 C 1.47257 * 88.10935 * 88.18327 * 6 4 2 20 20 C 1.52496 * 87.73635 * 26.53518 * 19 6 4 21 21 C 1.53343 * 115.83598 * 218.59561 * 20 19 6 22 22 C 1.55115 * 103.91813 * 205.24568 * 21 20 19 23 23 C 1.54968 * 102.89440 * 37.09111 * 22 21 20 24 24 C 1.52959 * 116.07783 * 90.86209 * 20 19 6 25 25 H 1.08999 * 109.47259 * 299.99974 * 1 2 3 26 26 H 1.08999 * 109.47367 * 59.99906 * 1 2 3 27 27 H 1.08994 * 109.47188 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46764 * 240.00124 * 2 1 3 29 29 H 1.09002 * 109.47053 * 173.33656 * 3 2 1 30 30 H 1.09004 * 109.46999 * 293.33442 * 3 2 1 31 31 H 1.08998 * 109.47479 * 53.33669 * 3 2 1 32 32 H 1.09000 * 109.47121 * 299.99524 * 9 7 6 33 33 H 1.08997 * 109.47508 * 60.00204 * 9 7 6 34 34 H 1.09000 * 109.46460 * 299.99583 * 10 9 7 35 35 H 1.08997 * 109.47052 * 59.99580 * 10 9 7 36 36 H 0.97004 * 119.99846 * 179.97438 * 14 13 11 37 37 H 1.09002 * 113.50758 * 141.25296 * 19 6 4 38 38 H 1.09002 * 113.50354 * 271.74968 * 19 6 4 39 39 H 1.09008 * 110.53962 * 323.84977 * 21 20 19 40 40 H 1.08997 * 110.54249 * 86.63212 * 21 20 19 41 41 H 1.09007 * 110.72775 * 278.74248 * 22 21 20 42 42 H 1.09002 * 110.88539 * 155.51547 * 22 21 20 43 43 H 1.09010 * 110.47886 * 203.87743 * 23 22 21 44 44 H 1.09000 * 110.58859 * 81.31469 * 23 22 21 45 45 H 1.08993 * 110.11581 * 250.54120 * 24 20 19 46 46 H 1.09001 * 110.11451 * 12.12984 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.9708 -0.1092 2.1485 6 7 1.4826 -2.0740 1.4151 7 6 0.4174 -2.6127 2.0409 8 8 -0.3443 -1.9021 2.6619 9 6 0.1730 -4.0980 1.9690 10 6 -1.0915 -4.4455 2.7573 11 6 -1.3356 -5.9308 2.6859 12 1 -0.6570 -6.5637 2.1332 13 6 -2.4253 -6.4819 3.3262 14 7 -3.2513 -5.7114 3.9996 15 14 -2.7283 -8.3230 3.2372 16 1 -1.5678 -9.0444 3.8187 17 1 -3.9555 -8.6603 4.0024 18 1 -2.9029 -8.7279 1.8191 19 6 2.5945 -2.5800 0.5928 20 6 3.4071 -1.3768 1.0590 21 6 4.3120 -0.7316 0.0024 22 6 5.4290 -0.0489 0.8344 23 6 5.6570 -1.0503 1.9948 24 6 4.2428 -1.5791 2.3241 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1234 1.4449 0.1192 30 1 1.7772 1.9208 -0.9437 31 1 1.5825 1.9897 0.8243 32 1 0.0449 -4.3952 0.9281 33 1 1.0246 -4.6275 2.3959 34 1 -0.9638 -4.1482 3.7982 35 1 -1.9430 -3.9159 2.3300 36 1 -4.0181 -6.0990 4.4498 37 1 2.9923 -3.5339 0.9392 38 1 2.3820 -2.5748 -0.4763 39 1 4.7349 -1.4917 -0.6546 40 1 3.7582 0.0088 -0.5748 41 1 5.0911 0.9144 1.2168 42 1 6.3369 0.0694 0.2428 43 1 6.0848 -0.5418 2.8589 44 1 6.3045 -1.8667 1.6749 45 1 3.8141 -1.0130 3.1510 46 1 4.2874 -2.6381 2.5785 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457150219.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:17 Heat of formation + Delta-G solvation = -49.940836 kcal Electronic energy + Delta-G solvation = -22872.210303 eV Core-core repulsion = 19760.947980 eV Total energy + Delta-G solvation = -3111.262323 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.43910 -39.69019 -36.81812 -35.60618 -35.37704 -33.05033 -30.63040 -29.65536 -28.07193 -27.70100 -26.65409 -25.64383 -23.37078 -22.20700 -20.91372 -20.21943 -18.85511 -18.76670 -17.67756 -17.11995 -16.85542 -16.48931 -16.44223 -15.73109 -15.32891 -14.94287 -14.75586 -14.43045 -14.20075 -14.01404 -13.90692 -13.38070 -13.30846 -13.07178 -12.80586 -12.78202 -12.52730 -12.49925 -12.26347 -12.04007 -11.98102 -11.94621 -11.88328 -11.69007 -11.67889 -11.50892 -11.35821 -11.31166 -10.93108 -10.59484 -10.58802 -9.59552 -8.20702 -6.35935 1.39592 1.44923 1.52756 1.66515 1.91226 2.40969 3.11730 3.13408 3.49997 3.68451 3.87996 3.93294 3.97619 4.00928 4.29722 4.34555 4.41119 4.43953 4.46264 4.56846 4.60046 4.63419 4.65285 4.76460 4.80258 4.86981 4.88510 4.94185 5.00399 5.06727 5.09563 5.15599 5.16192 5.19581 5.32002 5.33048 5.36902 5.39109 5.44460 5.55686 5.56663 5.60129 5.79929 6.13259 6.75461 6.84421 7.26012 7.34725 8.91999 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.024869 B = 0.003918 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.627772 B = 7145.235222 C = 7797.205438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.089 4.089 3 C -0.144 4.144 4 C 0.138 3.862 5 H 0.056 0.944 6 N -0.647 5.647 7 C 0.536 3.464 8 O -0.591 6.591 9 C -0.109 4.109 10 C 0.046 3.954 11 C -0.546 4.546 12 H 0.075 0.925 13 C -0.006 4.006 14 N -0.938 5.938 15 Si 0.977 3.023 16 H -0.261 1.261 17 H -0.286 1.286 18 H -0.261 1.261 19 C 0.106 3.894 20 C -0.077 4.077 21 C -0.113 4.113 22 C -0.120 4.120 23 C -0.118 4.118 24 C -0.104 4.104 25 H 0.029 0.971 26 H 0.074 0.926 27 H 0.023 0.977 28 H 0.099 0.901 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.043 0.957 32 H 0.096 0.904 33 H 0.096 0.904 34 H -0.020 1.020 35 H -0.020 1.020 36 H 0.264 0.736 37 H 0.087 0.913 38 H 0.106 0.894 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.065 0.935 42 H 0.084 0.916 43 H 0.065 0.935 44 H 0.076 0.924 45 H 0.046 0.954 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.090 11.755 -12.893 28.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.108 4.108 3 C -0.201 4.201 4 C 0.034 3.966 5 H 0.074 0.926 6 N -0.381 5.381 7 C 0.328 3.672 8 O -0.471 6.471 9 C -0.149 4.149 10 C 0.009 3.991 11 C -0.584 4.584 12 H 0.093 0.907 13 C -0.204 4.204 14 N -0.578 5.578 15 Si 0.800 3.200 16 H -0.186 1.186 17 H -0.211 1.211 18 H -0.186 1.186 19 C -0.016 4.016 20 C -0.077 4.077 21 C -0.150 4.150 22 C -0.158 4.158 23 C -0.156 4.156 24 C -0.142 4.142 25 H 0.048 0.952 26 H 0.093 0.907 27 H 0.042 0.958 28 H 0.117 0.883 29 H 0.102 0.898 30 H 0.094 0.906 31 H 0.062 0.938 32 H 0.115 0.885 33 H 0.114 0.886 34 H -0.002 1.002 35 H -0.001 1.001 36 H 0.072 0.928 37 H 0.105 0.895 38 H 0.124 0.876 39 H 0.109 0.891 40 H 0.111 0.889 41 H 0.084 0.916 42 H 0.103 0.897 43 H 0.084 0.916 44 H 0.095 0.905 45 H 0.065 0.935 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 21.343 12.013 -12.334 27.422 hybrid contribution -1.280 -0.793 0.838 1.723 sum 20.063 11.221 -11.496 25.702 Atomic orbital electron populations 1.21698 0.96556 1.00180 1.01215 1.21326 0.94555 0.97836 0.97054 1.21918 1.02309 0.93351 1.02537 1.22796 0.90709 0.85169 0.97882 0.92619 1.49976 1.25394 1.11674 1.51051 1.20867 0.77937 0.91076 0.77368 1.90640 1.47021 1.64448 1.45039 1.21533 1.00582 0.89881 1.02898 1.18655 0.91603 0.95430 0.93440 1.21647 1.10620 0.93291 1.32813 0.90708 1.26172 0.95580 1.04114 0.94496 1.70184 1.15271 1.37950 1.34357 0.85332 0.77740 0.78066 0.78854 1.18586 1.21131 1.18577 1.23336 0.82748 0.98960 0.96551 1.22129 0.92435 0.95280 0.97898 1.22436 0.95710 1.00551 0.96329 1.22526 0.98858 0.97985 0.96388 1.22399 0.94970 0.99278 0.98951 1.21840 0.95806 1.01225 0.95289 0.95154 0.90748 0.95754 0.88280 0.89850 0.90629 0.93796 0.88548 0.88620 1.00187 1.00148 0.92768 0.89493 0.87634 0.89094 0.88933 0.91633 0.89740 0.91631 0.90505 0.93473 0.91796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.86 8.95 71.98 0.64 -3.21 16 2 C -0.09 -1.79 2.04 -10.79 -0.02 -1.82 16 3 C -0.14 -2.15 8.62 71.98 0.62 -1.53 16 4 C 0.14 3.43 3.30 42.17 0.14 3.57 16 5 H 0.06 1.66 7.91 -2.38 -0.02 1.65 16 6 N -0.65 -20.29 2.89 -833.00 -2.41 -22.70 16 7 C 0.54 23.32 7.30 87.66 0.64 23.96 16 8 O -0.59 -31.91 16.76 -3.03 -0.05 -31.96 16 9 C -0.11 -4.86 5.46 29.85 0.16 -4.69 16 10 C 0.05 2.74 4.26 29.85 0.13 2.86 16 11 C -0.55 -32.32 9.11 25.60 0.23 -32.08 16 12 H 0.07 4.03 7.74 -2.91 -0.02 4.01 16 13 C -0.01 -0.36 5.46 84.65 0.46 0.10 16 14 N -0.94 -61.12 13.29 21.45 0.28 -60.83 16 15 Si 0.98 45.23 29.54 68.60 2.03 47.26 16 16 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 17 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 18 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 19 C 0.11 2.17 7.30 83.45 0.61 2.78 16 20 C -0.08 -1.35 1.16 -52.31 -0.06 -1.41 16 21 C -0.11 -1.19 5.31 31.43 0.17 -1.02 16 22 C -0.12 -1.18 6.84 31.99 0.22 -0.96 16 23 C -0.12 -1.49 6.85 31.79 0.22 -1.28 16 24 C -0.10 -1.94 6.33 31.10 0.20 -1.74 16 25 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.02 0.81 7.06 -2.39 -0.02 0.79 16 28 H 0.10 1.58 6.30 -2.39 -0.02 1.57 16 29 H 0.08 0.93 5.69 -2.39 -0.01 0.92 16 30 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 31 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.10 3.85 8.14 -2.39 -0.02 3.83 16 33 H 0.10 3.84 8.14 -2.39 -0.02 3.82 16 34 H -0.02 -1.35 8.10 -2.39 -0.02 -1.37 16 35 H -0.02 -1.32 8.10 -2.39 -0.02 -1.34 16 36 H 0.26 16.05 8.31 -92.70 -0.77 15.28 16 37 H 0.09 1.67 7.91 -2.39 -0.02 1.65 16 38 H 0.11 1.70 7.51 -2.39 -0.02 1.69 16 39 H 0.09 0.72 8.13 -2.38 -0.02 0.70 16 40 H 0.09 0.85 4.09 -2.39 -0.01 0.84 16 41 H 0.06 0.68 7.84 -2.38 -0.02 0.66 16 42 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 43 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 44 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.05 1.07 7.82 -2.39 -0.02 1.05 16 46 H 0.06 1.27 7.79 -2.39 -0.02 1.25 16 Total: -1.00 -80.16 355.68 5.13 -75.03 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: 0.93 Total: 9.69 kcal Atomic # 6 Polarization: -20.84 SS G_CDS: 4.36 Total: -16.48 kcal Atomic # 7 Polarization: -81.41 SS G_CDS: -2.13 Total: -83.53 kcal Atomic # 8 Polarization: -31.91 SS G_CDS: -0.05 Total: -31.96 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -80.16 5.13 -75.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457150219.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.087 kcal (2) G-P(sol) polarization free energy of solvation -80.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds