Wall clock time and date at job start Tue Mar 31 2020 02:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50694 * 120.00061 * 2 1 4 4 C 1.53007 * 109.47063 * 122.76918 * 3 2 1 5 5 C 1.50704 * 110.01409 * 55.06839 * 4 3 2 6 6 O 1.21281 * 119.99484 * 244.81315 * 5 4 3 7 7 N 1.34773 * 120.00224 * 64.81705 * 5 4 3 8 8 C 1.46503 * 119.99740 * 175.28823 * 7 5 4 9 9 C 1.53006 * 109.46669 * 179.97438 * 8 7 5 10 10 C 1.52996 * 109.47389 * 300.00039 * 9 8 7 11 11 C 1.52997 * 109.46990 * 60.00192 * 9 8 7 12 12 C 1.50700 * 109.46665 * 180.02562 * 9 8 7 13 13 H 1.07997 * 120.00513 * 0.02562 * 12 9 8 14 14 C 1.37878 * 119.99725 * 180.02562 * 12 9 8 15 15 N 1.31524 * 120.00207 * 359.97438 * 14 12 9 16 16 Si 1.86798 * 120.00194 * 180.02562 * 14 12 9 17 17 H 1.48496 * 109.47412 * 59.99678 * 16 14 12 18 18 H 1.48498 * 109.47521 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.46805 * 299.99916 * 16 14 12 20 20 C 1.54263 * 110.03191 * 293.62459 * 4 3 2 21 21 C 1.54894 * 104.19249 * 217.10359 * 20 4 3 22 22 C 1.54877 * 102.75009 * 37.94427 * 21 20 4 23 23 C 1.53880 * 110.03306 * 176.45494 * 4 3 2 24 24 H 1.08002 * 119.99819 * 179.97438 * 1 2 3 25 25 H 1.07999 * 119.99854 * 0.02562 * 1 2 3 26 26 H 1.08003 * 119.99946 * 180.02562 * 2 1 3 27 27 H 1.08996 * 109.47205 * 2.77172 * 3 2 1 28 28 H 1.08997 * 109.47672 * 242.76947 * 3 2 1 29 29 H 0.97005 * 119.99957 * 355.29283 * 7 5 4 30 30 H 1.08998 * 109.47390 * 299.99841 * 8 7 5 31 31 H 1.08992 * 109.47084 * 60.00518 * 8 7 5 32 32 H 1.09007 * 109.46855 * 59.99880 * 10 9 8 33 33 H 1.08998 * 109.47258 * 180.02562 * 10 9 8 34 34 H 1.09002 * 109.47077 * 300.00522 * 10 9 8 35 35 H 1.08998 * 109.47318 * 59.99978 * 11 9 8 36 36 H 1.09004 * 109.47467 * 179.97438 * 11 9 8 37 37 H 1.08998 * 109.47824 * 299.99688 * 11 9 8 38 38 H 0.96996 * 120.00364 * 180.02562 * 15 14 12 39 39 H 1.08999 * 110.48668 * 335.78248 * 20 4 3 40 40 H 1.08999 * 110.48386 * 98.42784 * 20 4 3 41 41 H 1.08997 * 110.75520 * 279.62659 * 21 20 4 42 42 H 1.09005 * 110.75014 * 156.25777 * 21 20 4 43 43 H 1.09000 * 110.49060 * 203.37910 * 22 21 20 44 44 H 1.09001 * 110.48835 * 80.73150 * 22 21 20 45 45 H 1.08993 * 110.03444 * 238.57407 * 23 4 3 46 46 H 1.09001 * 110.03108 * 0.02562 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.9947 1.3563 1.2130 5 6 3.8984 0.1503 1.2208 6 8 3.8120 -0.6663 2.1132 7 7 4.8027 -0.0206 0.2362 8 6 5.7503 -1.1362 0.2975 9 6 6.6586 -1.1019 -0.9333 10 6 5.8077 -1.2245 -2.1988 11 6 7.4283 0.2201 -0.9624 12 6 7.6330 -2.2498 -0.8705 13 1 7.6068 -2.9355 -0.0366 14 6 8.5580 -2.4247 -1.8779 15 7 8.5897 -1.5900 -2.8939 16 14 9.7653 -3.8480 -1.8006 17 1 9.0175 -5.1306 -1.7736 18 1 10.6479 -3.8140 -2.9944 19 1 10.5910 -3.7304 -0.5719 20 6 2.1663 1.4057 2.5134 21 6 2.9699 2.3517 3.4399 22 6 3.4884 3.4320 2.4586 23 6 3.8354 2.6447 1.1781 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3563 2.1329 0.0497 28 1 2.6524 1.3847 -0.9137 29 1 4.8261 0.5952 -0.5131 30 1 6.3563 -1.0490 1.1993 31 1 5.2020 -2.0779 0.3177 32 1 5.1025 -0.3945 -2.2444 33 1 6.4548 -1.2005 -3.0756 34 1 5.2592 -2.1663 -2.1780 35 1 8.0346 0.3075 -0.0608 36 1 8.0758 0.2444 -1.8390 37 1 6.7234 1.0502 -1.0080 38 1 9.2402 -1.7132 -3.6027 39 1 1.1746 1.8140 2.3187 40 1 2.0908 0.4122 2.9555 41 1 3.8009 1.8221 3.9057 42 1 2.3212 2.7954 4.1952 43 1 4.3778 3.9173 2.8606 44 1 2.7103 4.1676 2.2550 45 1 4.8969 2.3977 1.1677 46 1 3.5796 3.2336 0.2972 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458013624.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:12:25 Heat of formation + Delta-G solvation = -47.416489 kcal Electronic energy + Delta-G solvation = -23189.443294 eV Core-core repulsion = 20078.290435 eV Total energy + Delta-G solvation = -3111.152859 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.34961 -37.45356 -36.12723 -34.56805 -33.26511 -31.04067 -29.90809 -28.61158 -25.75823 -25.71971 -25.26623 -24.73725 -21.75498 -20.71077 -19.87402 -18.96345 -18.65461 -16.73418 -15.88973 -15.82498 -15.04768 -14.92670 -14.62815 -14.53942 -14.19139 -13.54744 -13.39352 -13.15123 -12.90567 -12.52936 -12.19240 -12.16423 -11.52873 -11.37767 -11.35658 -11.20378 -11.14069 -11.00047 -10.93265 -10.84173 -10.73202 -10.61220 -10.50226 -10.37608 -10.19508 -9.62842 -9.44464 -9.28361 -9.09774 -8.78281 -8.42781 -8.27094 -6.01671 -4.11757 2.30800 3.12704 3.30155 3.34444 3.37946 3.77755 4.40306 4.45198 4.60179 4.74615 4.96154 5.14254 5.24919 5.27595 5.32329 5.38731 5.47578 5.58416 5.65816 5.73550 5.83082 5.87712 5.92336 5.99774 6.06611 6.19026 6.26308 6.32292 6.34307 6.41837 6.52228 6.66509 6.78151 6.79997 6.82832 6.94914 7.02244 7.08494 7.36405 7.55911 7.69564 8.01241 8.09495 8.18880 8.39288 8.77130 8.89102 9.53963 10.99614 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.024188 B = 0.004426 C = 0.004199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.328009 B = 6325.390533 C = 6667.354586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.144 4.144 3 C -0.079 4.079 4 C -0.078 4.078 5 C 0.519 3.481 6 O -0.551 6.551 7 N -0.716 5.716 8 C 0.132 3.868 9 C 0.056 3.944 10 C -0.130 4.130 11 C -0.130 4.130 12 C -0.506 4.506 13 H 0.056 0.944 14 C 0.067 3.933 15 N -0.886 5.886 16 Si 0.893 3.107 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.277 1.277 20 C -0.104 4.104 21 C -0.125 4.125 22 C -0.122 4.122 23 C -0.118 4.118 24 H 0.095 0.905 25 H 0.094 0.906 26 H 0.109 0.891 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.397 0.603 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.006 0.994 33 H 0.085 0.915 34 H 0.026 0.974 35 H 0.026 0.974 36 H 0.085 0.915 37 H 0.006 0.994 38 H 0.260 0.740 39 H 0.067 0.933 40 H 0.085 0.915 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.073 0.927 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.350 10.080 5.077 16.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.162 4.162 3 C -0.116 4.116 4 C -0.081 4.081 5 C 0.304 3.696 6 O -0.429 6.429 7 N -0.366 5.366 8 C 0.010 3.990 9 C 0.056 3.944 10 C -0.187 4.187 11 C -0.188 4.188 12 C -0.544 4.544 13 H 0.074 0.926 14 C -0.135 4.135 15 N -0.525 5.525 16 Si 0.721 3.279 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.142 4.142 21 C -0.163 4.163 22 C -0.159 4.159 23 C -0.156 4.156 24 H 0.113 0.887 25 H 0.112 0.888 26 H 0.127 0.873 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.232 0.768 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.025 0.975 33 H 0.104 0.896 34 H 0.045 0.955 35 H 0.045 0.955 36 H 0.104 0.896 37 H 0.025 0.975 38 H 0.070 0.930 39 H 0.086 0.914 40 H 0.104 0.896 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.091 0.909 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.261 9.512 5.530 16.474 hybrid contribution 0.757 -0.574 -0.431 1.043 sum -11.504 8.938 5.099 15.435 Atomic orbital electron populations 1.23741 0.95725 1.01500 1.02542 1.22976 0.96165 0.98561 0.98466 1.20887 0.97839 0.96009 0.96861 1.21432 0.95251 0.94179 0.97256 1.20280 0.80682 0.86633 0.81959 1.90629 1.70089 1.45056 1.37125 1.46283 1.34539 1.31798 1.24003 1.21688 0.89795 0.87120 1.00417 1.18342 0.91821 0.94938 0.89323 1.21819 0.97835 0.96588 1.02498 1.21821 0.99451 0.95136 1.02357 1.20948 1.15526 1.11003 1.06974 0.92565 1.24874 0.97170 0.96179 0.95239 1.69794 1.35956 1.36466 1.10252 0.86640 0.81017 0.82859 0.77380 1.20299 1.21328 1.20303 1.22334 0.97220 1.01422 0.93232 1.22498 0.99845 0.96479 0.97438 1.22341 1.00738 0.97611 0.95259 1.22302 1.00105 0.94378 0.98812 0.88683 0.88807 0.87273 0.90532 0.90445 0.76813 0.92950 0.92865 0.97545 0.89633 0.95506 0.95509 0.89624 0.97531 0.92973 0.91432 0.89640 0.91312 0.91700 0.91645 0.91653 0.90866 0.90861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.16 14.32 29.01 0.42 -1.74 16 2 C -0.14 -1.82 8.43 -36.03 -0.30 -2.13 16 3 C -0.08 -0.90 4.37 -27.88 -0.12 -1.02 16 4 C -0.08 -1.01 0.53 -154.54 -0.08 -1.09 16 5 C 0.52 8.91 5.13 -10.98 -0.06 8.86 16 6 O -0.55 -11.44 15.38 5.56 0.09 -11.35 16 7 N -0.72 -12.68 4.59 -60.29 -0.28 -12.96 16 8 C 0.13 2.82 4.51 -4.04 -0.02 2.80 16 9 C 0.06 1.30 0.50 -155.66 -0.08 1.23 16 10 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16 11 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 12 C -0.51 -13.25 8.01 -34.44 -0.28 -13.53 16 13 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 14 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 15 N -0.89 -23.54 9.35 55.43 0.52 -23.02 16 16 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 C -0.10 -1.30 5.28 -25.07 -0.13 -1.43 16 21 C -0.13 -1.41 6.91 -24.74 -0.17 -1.58 16 22 C -0.12 -1.23 6.83 -25.08 -0.17 -1.40 16 23 C -0.12 -1.34 5.92 -25.61 -0.15 -1.50 16 24 H 0.09 0.98 8.06 -52.49 -0.42 0.55 16 25 H 0.09 0.86 7.84 -52.49 -0.41 0.45 16 26 H 0.11 1.65 7.55 -52.48 -0.40 1.25 16 27 H 0.08 0.73 7.68 -51.93 -0.40 0.33 16 28 H 0.08 0.86 7.94 -51.93 -0.41 0.45 16 29 H 0.40 6.44 5.85 -40.82 -0.24 6.21 16 30 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 31 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 33 H 0.09 2.13 6.07 -51.93 -0.32 1.81 16 34 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.09 2.12 6.07 -51.93 -0.32 1.81 16 37 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 38 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 39 H 0.07 0.72 7.78 -51.93 -0.40 0.32 16 40 H 0.09 1.27 6.77 -51.93 -0.35 0.92 16 41 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.07 0.94 7.47 -51.93 -0.39 0.56 16 46 H 0.07 0.70 7.67 -51.93 -0.40 0.30 16 LS Contribution 353.88 15.07 5.33 5.33 Total: -1.00 -27.81 353.88 -8.09 -35.90 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -8.09 Total: 6.48 kcal Atomic # 6 Polarization: -15.47 SS G_CDS: -0.64 Total: -16.11 kcal Atomic # 7 Polarization: -36.22 SS G_CDS: 0.24 Total: -35.98 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.09 Total: -11.35 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -27.81 -8.09 -35.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458013624.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.519 kcal (2) G-P(sol) polarization free energy of solvation -27.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds