Wall clock time and date at job start Tue Mar 31 2020 02:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50694 * 120.00061 * 2 1 4 4 C 1.53007 * 109.47063 * 122.76918 * 3 2 1 5 5 C 1.50704 * 110.01409 * 55.06839 * 4 3 2 6 6 O 1.21281 * 119.99484 * 244.81315 * 5 4 3 7 7 N 1.34773 * 120.00224 * 64.81705 * 5 4 3 8 8 C 1.46503 * 119.99740 * 175.28823 * 7 5 4 9 9 C 1.53006 * 109.46669 * 179.97438 * 8 7 5 10 10 C 1.52996 * 109.47389 * 300.00039 * 9 8 7 11 11 C 1.52997 * 109.46990 * 60.00192 * 9 8 7 12 12 C 1.50700 * 109.46665 * 180.02562 * 9 8 7 13 13 H 1.07997 * 120.00513 * 0.02562 * 12 9 8 14 14 C 1.37878 * 119.99725 * 180.02562 * 12 9 8 15 15 N 1.31524 * 120.00207 * 359.97438 * 14 12 9 16 16 Si 1.86798 * 120.00194 * 180.02562 * 14 12 9 17 17 H 1.48496 * 109.47412 * 59.99678 * 16 14 12 18 18 H 1.48498 * 109.47521 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.46805 * 299.99916 * 16 14 12 20 20 C 1.54263 * 110.03191 * 293.62459 * 4 3 2 21 21 C 1.54894 * 104.19249 * 217.10359 * 20 4 3 22 22 C 1.54877 * 102.75009 * 37.94427 * 21 20 4 23 23 C 1.53880 * 110.03306 * 176.45494 * 4 3 2 24 24 H 1.08002 * 119.99819 * 179.97438 * 1 2 3 25 25 H 1.07999 * 119.99854 * 0.02562 * 1 2 3 26 26 H 1.08003 * 119.99946 * 180.02562 * 2 1 3 27 27 H 1.08996 * 109.47205 * 2.77172 * 3 2 1 28 28 H 1.08997 * 109.47672 * 242.76947 * 3 2 1 29 29 H 0.97005 * 119.99957 * 355.29283 * 7 5 4 30 30 H 1.08998 * 109.47390 * 299.99841 * 8 7 5 31 31 H 1.08992 * 109.47084 * 60.00518 * 8 7 5 32 32 H 1.09007 * 109.46855 * 59.99880 * 10 9 8 33 33 H 1.08998 * 109.47258 * 180.02562 * 10 9 8 34 34 H 1.09002 * 109.47077 * 300.00522 * 10 9 8 35 35 H 1.08998 * 109.47318 * 59.99978 * 11 9 8 36 36 H 1.09004 * 109.47467 * 179.97438 * 11 9 8 37 37 H 1.08998 * 109.47824 * 299.99688 * 11 9 8 38 38 H 0.96996 * 120.00364 * 180.02562 * 15 14 12 39 39 H 1.08999 * 110.48668 * 335.78248 * 20 4 3 40 40 H 1.08999 * 110.48386 * 98.42784 * 20 4 3 41 41 H 1.08997 * 110.75520 * 279.62659 * 21 20 4 42 42 H 1.09005 * 110.75014 * 156.25777 * 21 20 4 43 43 H 1.09000 * 110.49060 * 203.37910 * 22 21 20 44 44 H 1.09001 * 110.48835 * 80.73150 * 22 21 20 45 45 H 1.08993 * 110.03444 * 238.57407 * 23 4 3 46 46 H 1.09001 * 110.03108 * 0.02562 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.9947 1.3563 1.2130 5 6 3.8984 0.1503 1.2208 6 8 3.8120 -0.6663 2.1132 7 7 4.8027 -0.0206 0.2362 8 6 5.7503 -1.1362 0.2975 9 6 6.6586 -1.1019 -0.9333 10 6 5.8077 -1.2245 -2.1988 11 6 7.4283 0.2201 -0.9624 12 6 7.6330 -2.2498 -0.8705 13 1 7.6068 -2.9355 -0.0366 14 6 8.5580 -2.4247 -1.8779 15 7 8.5897 -1.5900 -2.8939 16 14 9.7653 -3.8480 -1.8006 17 1 9.0175 -5.1306 -1.7736 18 1 10.6479 -3.8140 -2.9944 19 1 10.5910 -3.7304 -0.5719 20 6 2.1663 1.4057 2.5134 21 6 2.9699 2.3517 3.4399 22 6 3.4884 3.4320 2.4586 23 6 3.8354 2.6447 1.1781 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3563 2.1329 0.0497 28 1 2.6524 1.3847 -0.9137 29 1 4.8261 0.5952 -0.5131 30 1 6.3563 -1.0490 1.1993 31 1 5.2020 -2.0779 0.3177 32 1 5.1025 -0.3945 -2.2444 33 1 6.4548 -1.2005 -3.0756 34 1 5.2592 -2.1663 -2.1780 35 1 8.0346 0.3075 -0.0608 36 1 8.0758 0.2444 -1.8390 37 1 6.7234 1.0502 -1.0080 38 1 9.2402 -1.7132 -3.6027 39 1 1.1746 1.8140 2.3187 40 1 2.0908 0.4122 2.9555 41 1 3.8009 1.8221 3.9057 42 1 2.3212 2.7954 4.1952 43 1 4.3778 3.9173 2.8606 44 1 2.7103 4.1676 2.2550 45 1 4.8969 2.3977 1.1677 46 1 3.5796 3.2336 0.2972 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458013624.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:12:24 Heat of formation + Delta-G solvation = -61.591999 kcal Electronic energy + Delta-G solvation = -23190.057990 eV Core-core repulsion = 20078.290435 eV Total energy + Delta-G solvation = -3111.767555 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.59217 -38.83824 -37.75074 -35.47984 -34.97136 -32.80767 -30.98975 -29.52091 -27.58124 -27.50770 -26.87539 -25.94604 -23.09547 -21.58191 -20.77472 -20.60528 -20.18649 -18.04878 -17.65546 -16.98195 -16.61560 -16.53146 -15.88588 -15.65875 -15.42742 -14.85772 -14.74981 -14.53060 -14.23973 -14.05601 -13.82861 -13.23546 -13.16313 -13.04723 -12.69230 -12.64559 -12.41972 -12.34026 -12.25977 -12.14013 -12.01168 -11.91270 -11.86078 -11.53968 -11.49912 -11.37221 -11.24046 -10.75715 -10.51598 -10.40464 -10.18398 -9.91102 -8.03178 -6.19036 1.40390 1.42794 1.43921 1.50625 1.76139 2.33617 2.50311 3.20090 3.50655 3.63273 3.77664 4.10421 4.16999 4.27975 4.39924 4.43868 4.48125 4.51703 4.57699 4.69388 4.70278 4.82131 4.88455 4.95616 4.99677 5.03441 5.04483 5.09504 5.10052 5.12115 5.17452 5.23302 5.27944 5.36471 5.42864 5.51272 5.62261 5.65514 5.65796 5.75590 5.89413 6.13531 6.20158 6.42400 6.71959 6.84379 7.37245 7.48469 8.95492 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.024188 B = 0.004426 C = 0.004199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.328009 B = 6325.390533 C = 6667.354586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.172 4.172 3 C -0.073 4.073 4 C -0.071 4.071 5 C 0.517 3.483 6 O -0.593 6.593 7 N -0.710 5.710 8 C 0.150 3.850 9 C 0.052 3.948 10 C -0.118 4.118 11 C -0.118 4.118 12 C -0.531 4.531 13 H 0.041 0.959 14 C 0.030 3.970 15 N -0.898 5.898 16 Si 0.944 3.056 17 H -0.278 1.278 18 H -0.281 1.281 19 H -0.277 1.277 20 C -0.103 4.103 21 C -0.127 4.127 22 C -0.115 4.115 23 C -0.119 4.119 24 H 0.095 0.905 25 H 0.122 0.878 26 H 0.072 0.928 27 H 0.110 0.890 28 H 0.081 0.919 29 H 0.407 0.593 30 H 0.034 0.966 31 H 0.031 0.969 32 H 0.036 0.964 33 H 0.064 0.936 34 H 0.014 0.986 35 H 0.017 0.983 36 H 0.063 0.937 37 H 0.037 0.963 38 H 0.261 0.739 39 H 0.094 0.906 40 H 0.052 0.948 41 H 0.039 0.961 42 H 0.085 0.915 43 H 0.068 0.932 44 H 0.093 0.907 45 H 0.053 0.947 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.004 12.549 4.644 19.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.190 4.190 3 C -0.110 4.110 4 C -0.074 4.074 5 C 0.304 3.696 6 O -0.474 6.474 7 N -0.361 5.361 8 C 0.026 3.974 9 C 0.052 3.948 10 C -0.176 4.176 11 C -0.176 4.176 12 C -0.569 4.569 13 H 0.060 0.940 14 C -0.170 4.170 15 N -0.536 5.536 16 Si 0.771 3.229 17 H -0.204 1.204 18 H -0.206 1.206 19 H -0.203 1.203 20 C -0.141 4.141 21 C -0.164 4.164 22 C -0.153 4.153 23 C -0.157 4.157 24 H 0.113 0.887 25 H 0.140 0.860 26 H 0.090 0.910 27 H 0.128 0.872 28 H 0.099 0.901 29 H 0.244 0.756 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.055 0.945 33 H 0.082 0.918 34 H 0.034 0.966 35 H 0.036 0.964 36 H 0.082 0.918 37 H 0.056 0.944 38 H 0.070 0.930 39 H 0.113 0.887 40 H 0.071 0.929 41 H 0.058 0.942 42 H 0.104 0.896 43 H 0.087 0.913 44 H 0.111 0.889 45 H 0.072 0.928 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -13.920 12.002 5.083 19.070 hybrid contribution 1.209 -1.397 -0.256 1.865 sum -12.711 10.605 4.828 17.243 Atomic orbital electron populations 1.23967 0.95043 1.02876 0.99616 1.22887 0.96934 0.97951 1.01269 1.20926 0.97956 0.96225 0.95892 1.21474 0.94862 0.92421 0.98655 1.21181 0.80332 0.87437 0.80600 1.90609 1.71177 1.46973 1.38635 1.46105 1.34177 1.30952 1.24828 1.21213 0.89736 0.87636 0.98859 1.18340 0.91808 0.94500 0.90173 1.21650 0.97688 0.97254 1.01016 1.21649 0.99497 0.95746 1.00739 1.21227 1.16851 1.12046 1.06810 0.94045 1.25432 0.98405 0.98091 0.95063 1.69893 1.36197 1.37166 1.10351 0.85836 0.79283 0.80408 0.77390 1.20398 1.20610 1.20307 1.22339 0.98673 1.00116 0.92952 1.22504 0.99194 0.96625 0.98098 1.22348 1.01735 0.97341 0.93830 1.22360 0.98572 0.93798 1.00927 0.88654 0.86023 0.90970 0.87168 0.90060 0.75642 0.94790 0.95016 0.94537 0.91764 0.96631 0.96423 0.91796 0.94409 0.92963 0.88720 0.92936 0.94170 0.89613 0.91309 0.88886 0.92809 0.88026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.42 14.32 67.78 0.97 -2.45 16 2 C -0.17 -4.15 8.43 25.64 0.22 -3.93 16 3 C -0.07 -1.44 4.37 29.85 0.13 -1.31 16 4 C -0.07 -1.71 0.53 -52.20 -0.03 -1.74 16 5 C 0.52 17.95 5.13 87.66 0.45 18.40 16 6 O -0.59 -25.80 15.38 -3.03 -0.05 -25.85 16 7 N -0.71 -25.25 4.59 -463.05 -2.12 -27.37 16 8 C 0.15 6.60 4.51 86.38 0.39 6.99 16 9 C 0.05 2.46 0.50 -52.93 -0.03 2.44 16 10 C -0.12 -5.33 8.08 71.98 0.58 -4.75 16 11 C -0.12 -5.29 8.08 71.98 0.58 -4.71 16 12 C -0.53 -28.54 8.01 25.60 0.21 -28.33 16 13 H 0.04 2.29 7.74 -2.91 -0.02 2.26 16 14 C 0.03 1.60 5.15 84.65 0.44 2.03 16 15 N -0.90 -47.95 9.35 21.45 0.20 -47.75 16 16 Si 0.94 42.97 29.54 68.60 2.03 45.00 16 17 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 18 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 19 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 20 C -0.10 -2.39 5.28 31.67 0.17 -2.22 16 21 C -0.13 -2.63 6.91 31.88 0.22 -2.41 16 22 C -0.12 -1.93 6.83 31.67 0.22 -1.71 16 23 C -0.12 -2.35 5.92 31.32 0.19 -2.16 16 24 H 0.10 1.79 8.06 -2.91 -0.02 1.77 16 25 H 0.12 1.68 7.84 -2.91 -0.02 1.65 16 26 H 0.07 2.26 7.55 -2.91 -0.02 2.24 16 27 H 0.11 1.49 7.68 -2.39 -0.02 1.47 16 28 H 0.08 1.54 7.94 -2.39 -0.02 1.53 16 29 H 0.41 12.69 5.85 -92.70 -0.54 12.15 16 30 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.04 1.38 6.86 -2.38 -0.02 1.36 16 33 H 0.06 3.20 6.07 -2.39 -0.01 3.18 16 34 H 0.01 0.68 8.14 -2.39 -0.02 0.67 16 35 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.06 3.16 6.07 -2.39 -0.01 3.14 16 37 H 0.04 1.40 6.86 -2.39 -0.02 1.38 16 38 H 0.26 13.44 8.31 -92.71 -0.77 12.67 16 39 H 0.09 1.67 7.78 -2.39 -0.02 1.65 16 40 H 0.05 1.58 6.77 -2.39 -0.02 1.56 16 41 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 43 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.05 1.28 7.47 -2.39 -0.02 1.27 16 46 H 0.10 1.46 7.67 -2.39 -0.02 1.45 16 Total: -1.00 -62.63 353.88 5.14 -57.49 By element: Atomic # 1 Polarization: 23.96 SS G_CDS: 0.39 Total: 24.35 kcal Atomic # 6 Polarization: -30.56 SS G_CDS: 4.69 Total: -25.86 kcal Atomic # 7 Polarization: -73.21 SS G_CDS: -1.92 Total: -75.13 kcal Atomic # 8 Polarization: -25.80 SS G_CDS: -0.05 Total: -25.85 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -62.63 5.14 -57.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458013624.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.102 kcal (2) G-P(sol) polarization free energy of solvation -62.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds