Wall clock time and date at job start Tue Mar 31 2020 02:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47385 * 2 1 4 4 C 1.50702 * 109.46702 * 240.00113 * 2 1 3 5 5 H 1.08007 * 120.00135 * 240.00032 * 4 2 1 6 6 C 1.37878 * 119.99858 * 60.00252 * 4 2 1 7 7 N 1.31512 * 120.00240 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99784 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47382 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47435 * 119.99790 * 8 6 4 11 11 H 1.48507 * 109.47245 * 239.99924 * 8 6 4 12 12 C 1.52997 * 109.47363 * 120.00478 * 2 1 3 13 13 N 1.46900 * 109.47100 * 299.99786 * 12 2 1 14 14 C 1.46897 * 111.00441 * 179.97438 * 13 12 2 15 15 H 1.09008 * 113.52602 * 29.60560 * 14 13 12 16 16 C 1.51010 * 114.51912 * 255.49548 * 14 13 12 17 17 H 1.09002 * 115.11064 * 321.88001 * 16 14 13 18 18 C 1.52843 * 125.59517 * 115.37683 * 16 14 13 19 19 C 1.56104 * 100.09340 * 127.85425 * 18 16 14 20 20 O 1.45492 * 105.73839 * 336.78976 * 19 18 16 21 21 C 1.38588 * 107.03245 * 347.96296 * 20 19 18 22 22 H 1.08998 * 109.23230 * 285.75522 * 21 20 19 23 23 C 1.47413 * 138.04762 * 131.46197 * 21 20 19 24 24 C 1.52742 * 125.44042 * 100.15750 * 23 21 20 25 25 C 1.53988 * 86.71586 * 201.49272 * 24 23 21 26 26 C 1.52722 * 125.49944 * 342.66072 * 23 21 20 27 27 H 1.09001 * 109.46826 * 299.99974 * 1 2 3 28 28 H 1.09001 * 109.47355 * 59.99640 * 1 2 3 29 29 H 1.08996 * 109.47351 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47476 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47168 * 300.00475 * 3 2 1 32 32 H 1.09001 * 109.47117 * 60.00204 * 3 2 1 33 33 H 0.96998 * 119.99622 * 180.02562 * 7 6 4 34 34 H 1.08994 * 109.47649 * 179.97438 * 12 2 1 35 35 H 1.09006 * 109.47336 * 59.99388 * 12 2 1 36 36 H 1.00900 * 110.99613 * 303.95509 * 13 12 2 37 37 H 1.09007 * 111.28383 * 245.56407 * 18 16 14 38 38 H 1.08996 * 111.29022 * 10.13778 * 18 16 14 39 39 H 1.09000 * 110.19775 * 95.85703 * 19 18 16 40 40 H 1.08994 * 110.19534 * 217.72235 * 19 18 16 41 41 H 1.09002 * 113.67576 * 315.94514 * 24 23 21 42 42 H 1.08995 * 113.67906 * 87.03784 * 24 23 21 43 43 H 1.08997 * 113.56622 * 269.94911 * 25 24 23 44 44 H 1.08998 * 113.56960 * 139.17920 * 25 24 23 45 45 H 1.08998 * 113.67256 * 272.91738 * 26 23 21 46 46 H 1.09003 * 113.67734 * 44.00490 * 26 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1315 6 6 1.6991 -0.2393 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3223 -1.1194 -4.0080 9 1 3.1481 -2.2856 -3.6040 10 1 1.1675 -1.5865 -4.8166 11 1 3.1471 -0.1856 -4.8162 12 6 2.0401 -0.7213 1.2491 13 7 1.5505 -0.0289 2.4486 14 6 2.0210 -0.6954 3.6702 15 1 2.9807 -1.1980 3.5496 16 6 0.9702 -1.5136 4.3822 17 1 -0.0300 -1.0802 4.3851 18 6 0.9998 -3.0301 4.5701 19 6 0.7837 -3.1188 6.1135 20 8 1.2180 -1.8369 6.6472 21 6 1.8907 -1.1802 5.6289 22 1 2.8700 -1.6387 5.4916 23 6 1.8953 0.1528 4.9995 24 6 2.9033 1.2640 5.2859 25 6 1.8467 2.2420 4.7398 26 6 0.7842 1.1938 5.1190 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6768 1.9562 0.8900 33 1 0.7081 1.1609 -3.4844 34 1 3.1300 -0.7218 1.2490 35 1 1.6767 -1.7490 1.2492 36 1 1.8199 0.9434 2.4401 37 1 0.1859 -3.5119 4.0282 38 1 1.9651 -3.4459 4.2812 39 1 -0.2706 -3.2818 6.3371 40 1 1.3867 -3.9245 6.5322 41 1 3.1172 1.3983 6.3463 42 1 3.8038 1.2065 4.6746 43 1 1.9256 2.4140 3.6663 44 1 1.7709 3.1663 5.3126 45 1 -0.0037 1.0802 4.3745 46 1 0.3986 1.3081 6.1321 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459731983.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:11:40 Heat of formation + Delta-G solvation = 53.815142 kcal Electronic energy + Delta-G solvation = -23399.259593 eV Core-core repulsion = 20292.496467 eV Total energy + Delta-G solvation = -3106.763126 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.99878 -38.15839 -36.55452 -34.32695 -32.50731 -30.73517 -30.12490 -25.92472 -25.58431 -25.25645 -24.72123 -24.21307 -22.49129 -21.67898 -20.13517 -18.68296 -18.14367 -16.71728 -16.08067 -15.77147 -15.53925 -15.35649 -14.65473 -14.44928 -13.96113 -13.75578 -13.14207 -12.96412 -12.52591 -12.30609 -12.19491 -11.99064 -11.92715 -11.43612 -11.35548 -11.15875 -11.14590 -11.11583 -10.87529 -10.66238 -10.59518 -10.28584 -10.18219 -10.09721 -10.00227 -9.52530 -9.39842 -9.21047 -8.82074 -8.61707 -8.30289 -7.74491 -5.92204 -4.02432 3.04112 3.29395 3.37971 3.41253 4.10963 4.38708 4.44239 4.52902 4.67777 4.71955 4.86449 4.97047 5.04720 5.22314 5.33508 5.36832 5.47890 5.51049 5.57299 5.66207 5.76655 5.76901 5.85029 5.85412 5.97621 6.11811 6.16241 6.28287 6.31928 6.39812 6.46427 6.49356 6.70507 6.88114 7.05651 7.08808 7.15762 7.37252 7.46963 7.73007 7.75176 7.82665 7.95446 8.20285 8.33734 8.55016 8.99086 9.62692 11.08300 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.023801 B = 0.004621 C = 0.004148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.135893 B = 6058.270578 C = 6748.349801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.069 3.931 3 C -0.132 4.132 4 C -0.505 4.505 5 H 0.051 0.949 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.887 3.113 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.076 3.924 13 N -0.666 5.666 14 C 0.097 3.903 15 H 0.076 0.924 16 C -0.148 4.148 17 H 0.117 0.883 18 C -0.145 4.145 19 C 0.055 3.945 20 O -0.361 6.361 21 C 0.039 3.961 22 H 0.067 0.933 23 C -0.064 4.064 24 C -0.133 4.133 25 C -0.138 4.138 26 C -0.109 4.109 27 H 0.020 0.980 28 H 0.073 0.927 29 H 0.017 0.983 30 H 0.018 0.982 31 H 0.083 0.917 32 H 0.010 0.990 33 H 0.257 0.743 34 H 0.012 0.988 35 H 0.056 0.944 36 H 0.339 0.661 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.066 0.934 41 H 0.082 0.918 42 H 0.068 0.932 43 H 0.085 0.915 44 H 0.067 0.933 45 H 0.084 0.916 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.017 -1.725 15.656 15.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.069 3.931 3 C -0.190 4.190 4 C -0.544 4.544 5 H 0.070 0.930 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.716 3.284 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.212 1.212 12 C -0.052 4.052 13 N -0.300 5.300 14 C -0.014 4.014 15 H 0.093 0.907 16 C -0.167 4.167 17 H 0.135 0.865 18 C -0.183 4.183 19 C -0.021 4.021 20 O -0.280 6.280 21 C -0.021 4.021 22 H 0.084 0.916 23 C -0.065 4.065 24 C -0.170 4.170 25 C -0.175 4.175 26 C -0.147 4.147 27 H 0.039 0.961 28 H 0.092 0.908 29 H 0.036 0.964 30 H 0.038 0.962 31 H 0.102 0.898 32 H 0.029 0.971 33 H 0.067 0.933 34 H 0.031 0.969 35 H 0.075 0.925 36 H 0.161 0.839 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.084 0.916 41 H 0.100 0.900 42 H 0.087 0.913 43 H 0.103 0.897 44 H 0.086 0.914 45 H 0.103 0.897 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.307 -1.878 15.698 15.813 hybrid contribution 1.369 -0.544 -1.065 1.818 sum 1.675 -2.422 14.633 14.926 Atomic orbital electron populations 1.21630 0.97374 0.98549 1.00040 1.18088 0.93207 0.91907 0.89936 1.21834 0.97685 0.99208 1.00256 1.21138 1.30999 1.11804 0.90473 0.93023 1.24879 0.95034 0.94969 0.98675 1.69841 1.36827 1.22850 1.22792 0.86618 0.78613 0.79719 0.83472 1.19995 1.21111 1.21174 1.22186 0.95354 0.97936 0.89755 1.60708 1.62508 1.06350 1.00407 1.23108 0.95420 0.94738 0.88125 0.90684 1.24495 0.99678 0.93804 0.98771 0.86518 1.22674 1.02944 0.97361 0.95329 1.24140 0.99839 0.85302 0.92831 1.87702 1.74725 1.30151 1.35427 1.22546 0.95883 0.97271 0.86364 0.91573 1.22785 0.99093 0.90245 0.94397 1.22841 0.97207 0.95672 1.01278 1.22840 0.96249 0.96936 1.01517 1.22567 0.96474 0.93578 1.02040 0.96134 0.90785 0.96351 0.96241 0.89802 0.97136 0.93255 0.96935 0.92546 0.83875 0.90165 0.90787 0.90323 0.91590 0.89975 0.91280 0.89655 0.91404 0.89721 0.89990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.84 8.09 37.16 0.30 -2.54 16 2 C 0.07 1.64 0.57 -155.66 -0.09 1.55 16 3 C -0.13 -3.05 7.92 37.15 0.29 -2.76 16 4 C -0.51 -13.44 8.01 -34.44 -0.28 -13.72 16 5 H 0.05 1.38 7.74 -52.48 -0.41 0.98 16 6 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 7 N -0.88 -24.25 9.35 55.43 0.52 -23.73 16 8 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 9 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 C 0.08 1.55 4.48 -3.83 -0.02 1.53 16 13 N -0.67 -11.35 5.44 -113.63 -0.62 -11.97 16 14 C 0.10 1.41 3.81 -74.09 -0.28 1.13 16 15 H 0.08 1.11 7.45 -51.92 -0.39 0.72 16 16 C -0.15 -2.04 4.24 -100.27 -0.43 -2.47 16 17 H 0.12 1.74 7.08 -51.93 -0.37 1.37 16 18 C -0.15 -1.74 6.79 -25.15 -0.17 -1.91 16 19 C 0.05 0.61 7.87 38.82 0.31 0.91 16 20 O -0.36 -5.03 11.31 -28.53 -0.32 -5.36 16 21 C 0.04 0.51 4.91 -34.60 -0.17 0.34 16 22 H 0.07 0.88 7.30 -51.93 -0.38 0.50 16 23 C -0.06 -0.82 1.15 -166.26 -0.19 -1.02 16 24 C -0.13 -1.52 7.92 -26.35 -0.21 -1.73 16 25 C -0.14 -1.58 7.74 -25.72 -0.20 -1.78 16 26 C -0.11 -1.34 6.86 -26.36 -0.18 -1.52 16 27 H 0.02 0.45 7.60 -51.93 -0.39 0.05 16 28 H 0.07 1.96 6.07 -51.93 -0.32 1.64 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 2.17 6.07 -51.93 -0.32 1.85 16 32 H 0.01 0.20 6.57 -51.93 -0.34 -0.14 16 33 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 34 H 0.01 0.26 8.13 -51.93 -0.42 -0.17 16 35 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.34 5.73 4.75 -39.29 -0.19 5.54 16 37 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.08 1.06 6.54 -51.93 -0.34 0.72 16 44 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.08 1.14 7.59 -51.93 -0.39 0.75 16 46 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 343.27 15.07 5.17 5.17 Total: -1.00 -27.13 343.27 -9.71 -36.84 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -8.03 Total: 5.42 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: -1.40 Total: -22.32 kcal Atomic # 7 Polarization: -35.60 SS G_CDS: -0.10 Total: -35.70 kcal Atomic # 8 Polarization: -5.03 SS G_CDS: -0.32 Total: -5.36 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -27.13 -9.71 -36.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459731983.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.651 kcal (2) G-P(sol) polarization free energy of solvation -27.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds