Wall clock time and date at job start Tue Mar 31 2020 02:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.46843 * 2 1 4 4 C 1.50705 * 109.47014 * 240.00607 * 2 1 3 5 5 H 1.07999 * 120.00281 * 240.00166 * 4 2 1 6 6 C 1.37874 * 120.00059 * 59.99472 * 4 2 1 7 7 N 1.31516 * 120.00185 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00156 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47031 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.46902 * 119.99969 * 8 6 4 11 11 H 1.48495 * 109.47194 * 240.00227 * 8 6 4 12 12 C 1.52995 * 109.47520 * 120.00327 * 2 1 3 13 13 N 1.46900 * 109.47137 * 300.00203 * 12 2 1 14 14 C 1.46903 * 110.99656 * 179.97438 * 13 12 2 15 15 H 1.09000 * 113.50822 * 314.13923 * 14 13 12 16 16 C 1.50995 * 114.52104 * 180.02562 * 14 13 12 17 17 H 1.09006 * 115.08108 * 171.95093 * 16 14 13 18 18 C 1.52775 * 125.71676 * 17.20560 * 16 14 13 19 19 C 1.56110 * 100.12756 * 233.33733 * 18 16 14 20 20 O 1.45481 * 105.74470 * 23.25699 * 19 18 16 21 21 C 1.38634 * 107.03693 * 12.01781 * 20 19 18 22 22 H 1.08994 * 108.90611 * 72.76928 * 21 20 19 23 23 C 1.47443 * 138.30742 * 228.67526 * 21 20 19 24 24 C 1.52720 * 125.47972 * 259.85595 * 23 21 20 25 25 C 1.53986 * 86.71353 * 108.91442 * 24 23 21 26 26 C 1.52739 * 125.44540 * 17.34374 * 23 21 20 27 27 H 1.09003 * 109.46973 * 299.99415 * 1 2 3 28 28 H 1.08994 * 109.47635 * 59.99468 * 1 2 3 29 29 H 1.09004 * 109.47155 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46727 * 180.02562 * 3 2 1 31 31 H 1.08993 * 109.47866 * 300.00327 * 3 2 1 32 32 H 1.09003 * 109.46859 * 60.00515 * 3 2 1 33 33 H 0.96998 * 120.00274 * 180.02562 * 7 6 4 34 34 H 1.09004 * 109.46785 * 59.99922 * 12 2 1 35 35 H 1.09002 * 109.47392 * 179.97438 * 12 2 1 36 36 H 1.00900 * 110.99968 * 56.04547 * 13 12 2 37 37 H 1.09002 * 111.24134 * 115.62270 * 18 16 14 38 38 H 1.09000 * 111.28628 * 351.07475 * 18 16 14 39 39 H 1.09004 * 110.19693 * 264.19085 * 19 18 16 40 40 H 1.08991 * 110.25919 * 142.36506 * 19 18 16 41 41 H 1.09007 * 113.66976 * 223.36997 * 24 23 21 42 42 H 1.08999 * 113.67313 * 354.45954 * 24 23 21 43 43 H 1.08999 * 113.57688 * 269.96161 * 25 24 23 44 44 H 1.09006 * 113.63535 * 139.20313 * 25 24 23 45 45 H 1.08999 * 113.67279 * 5.51058 * 26 23 21 46 46 H 1.08999 * 113.66967 * 136.60500 * 26 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1316 6 6 1.6991 -0.2392 -2.4828 7 7 0.9434 0.8303 -2.6034 8 14 2.3212 -1.1200 -4.0081 9 1 3.1453 -2.2874 -3.6041 10 1 1.1658 -1.5863 -4.8162 11 1 3.1463 -0.1870 -4.8166 12 6 2.0401 -0.7213 1.2491 13 7 1.5504 -0.0289 2.4486 14 6 2.0211 -0.6955 3.6702 15 1 1.9087 -1.7794 3.6449 16 6 1.5619 -0.0474 4.9544 17 1 1.7884 -0.6079 5.8615 18 6 0.4096 0.9465 5.0895 19 6 1.1390 2.1141 5.8254 20 8 2.5516 1.9540 5.5167 21 6 2.6409 1.0213 4.4949 22 1 2.2960 1.4789 3.5678 23 6 3.4042 -0.2012 4.1838 24 6 4.6204 -0.2766 3.2631 25 6 5.4581 -0.5049 4.5349 26 6 4.1765 -1.0450 5.1960 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1299 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9563 0.8901 33 1 0.7086 1.1616 -3.4843 34 1 1.6767 -1.7490 1.2490 35 1 3.1301 -0.7217 1.2489 36 1 0.5439 0.0411 2.4402 37 1 -0.3960 0.5366 5.6987 38 1 0.0427 1.2621 4.1128 39 1 0.9781 2.0398 6.9009 40 1 0.7799 3.0750 5.4573 41 1 4.6063 -1.1329 2.5887 42 1 4.8433 0.6615 2.7548 43 1 5.8261 0.4167 4.9859 44 1 6.2374 -1.2577 4.4156 45 1 4.0455 -0.7192 6.2279 46 1 4.0369 -2.1184 5.0680 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459731987.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:11:48 Heat of formation + Delta-G solvation = 64.025076 kcal Electronic energy + Delta-G solvation = -23695.519094 eV Core-core repulsion = 20589.198704 eV Total energy + Delta-G solvation = -3106.320390 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.07368 -37.87203 -36.65508 -34.61174 -32.25302 -30.66227 -29.80200 -25.82983 -25.52251 -25.24789 -24.70314 -24.21903 -22.95305 -21.75183 -19.62530 -18.47681 -18.17317 -16.64683 -16.05277 -15.71006 -15.54596 -15.10873 -14.66480 -14.41454 -14.20713 -13.60895 -13.14605 -12.79280 -12.41926 -12.29034 -12.14911 -11.95120 -11.86770 -11.43410 -11.30327 -11.20917 -11.07794 -11.04841 -10.77342 -10.62294 -10.58576 -10.23171 -10.14463 -10.07546 -9.91105 -9.45180 -9.34865 -9.09475 -8.82005 -8.61540 -8.30146 -7.67467 -5.92720 -4.02952 3.22617 3.29504 3.38163 3.41338 4.19739 4.41954 4.47367 4.53257 4.78647 4.84413 4.97193 4.99899 5.12044 5.33183 5.34934 5.50564 5.53440 5.63050 5.70573 5.76600 5.77900 5.89108 5.93339 5.98923 6.09277 6.22002 6.27149 6.31695 6.38284 6.46524 6.58453 6.61274 6.70545 6.87240 7.03940 7.15151 7.33965 7.35560 7.43788 7.67565 7.73869 7.81005 7.86994 8.18889 8.32563 8.54010 8.98586 9.62334 11.07863 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.023118 B = 0.005039 C = 0.004499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.870524 B = 5555.622178 C = 6222.759388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.069 3.931 3 C -0.118 4.118 4 C -0.505 4.505 5 H 0.052 0.948 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.887 3.113 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.285 1.285 12 C 0.074 3.926 13 N -0.662 5.662 14 C 0.089 3.911 15 H 0.054 0.946 16 C -0.197 4.197 17 H 0.106 0.894 18 C -0.137 4.137 19 C 0.059 3.941 20 O -0.372 6.372 21 C 0.064 3.936 22 H 0.121 0.879 23 C -0.056 4.056 24 C -0.121 4.121 25 C -0.140 4.140 26 C -0.116 4.116 27 H 0.009 0.991 28 H 0.083 0.917 29 H 0.019 0.981 30 H 0.019 0.981 31 H 0.074 0.926 32 H 0.018 0.982 33 H 0.257 0.743 34 H 0.014 0.986 35 H 0.064 0.936 36 H 0.342 0.658 37 H 0.071 0.929 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.087 0.913 42 H 0.073 0.927 43 H 0.077 0.923 44 H 0.064 0.936 45 H 0.068 0.932 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.459 -1.251 15.356 15.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.069 3.931 3 C -0.176 4.176 4 C -0.544 4.544 5 H 0.070 0.930 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.716 3.284 9 H -0.200 1.200 10 H -0.212 1.212 11 H -0.211 1.211 12 C -0.053 4.053 13 N -0.295 5.295 14 C -0.022 4.022 15 H 0.072 0.928 16 C -0.216 4.216 17 H 0.124 0.876 18 C -0.175 4.175 19 C -0.017 4.017 20 O -0.291 6.291 21 C 0.006 3.994 22 H 0.138 0.862 23 C -0.057 4.057 24 C -0.159 4.159 25 C -0.177 4.177 26 C -0.154 4.154 27 H 0.028 0.972 28 H 0.102 0.898 29 H 0.038 0.962 30 H 0.038 0.962 31 H 0.092 0.908 32 H 0.037 0.963 33 H 0.067 0.933 34 H 0.032 0.968 35 H 0.082 0.918 36 H 0.163 0.837 37 H 0.089 0.911 38 H 0.104 0.896 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.105 0.895 42 H 0.091 0.909 43 H 0.096 0.904 44 H 0.083 0.917 45 H 0.087 0.913 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.020 -0.560 15.291 15.434 hybrid contribution -0.464 -1.428 -0.876 1.738 sum 1.556 -1.988 14.415 14.635 Atomic orbital electron populations 1.21843 0.98621 0.98362 1.00230 1.18095 0.91997 0.93060 0.89979 1.21635 0.97853 0.98133 0.99983 1.21125 1.31049 1.11764 0.90422 0.92970 1.24878 0.95051 0.94930 0.98693 1.69840 1.36915 1.22778 1.22815 0.86616 0.78600 0.79743 0.83471 1.19958 1.21202 1.21104 1.22245 0.99525 0.94318 0.89250 1.60560 1.16183 1.52350 1.00428 1.22104 0.95273 0.95295 0.89479 0.92816 1.24461 0.98633 1.00423 0.98041 0.87622 1.22538 0.97387 0.95770 1.01821 1.24027 0.79942 0.98338 0.99345 1.87669 1.24526 1.60997 1.55931 1.23292 0.96377 0.86450 0.93240 0.86206 1.22053 0.93109 0.93318 0.97227 1.22707 0.94548 1.02787 0.95833 1.22867 0.96213 1.00958 0.97707 1.22659 0.95721 0.99085 0.97929 0.97184 0.89806 0.96211 0.96227 0.90759 0.96303 0.93250 0.96810 0.91801 0.83705 0.91073 0.89643 0.90930 0.91446 0.89472 0.90857 0.90387 0.91716 0.91310 0.89816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.04 7.92 37.16 0.29 -2.75 16 2 C 0.07 1.61 0.57 -155.66 -0.09 1.53 16 3 C -0.12 -2.81 8.09 37.16 0.30 -2.51 16 4 C -0.50 -13.29 8.01 -34.44 -0.28 -13.57 16 5 H 0.05 1.38 7.74 -52.49 -0.41 0.98 16 6 C 0.07 1.75 5.15 -17.82 -0.09 1.65 16 7 N -0.88 -24.18 9.35 55.43 0.52 -23.66 16 8 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 9 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 C 0.07 1.48 4.51 -3.83 -0.02 1.46 16 13 N -0.66 -11.06 3.62 -119.18 -0.43 -11.49 16 14 C 0.09 1.29 4.02 -79.04 -0.32 0.98 16 15 H 0.05 0.79 8.13 -51.93 -0.42 0.37 16 16 C -0.20 -2.57 4.51 -100.32 -0.45 -3.02 16 17 H 0.11 1.31 7.27 -51.93 -0.38 0.93 16 18 C -0.14 -1.63 6.58 -25.18 -0.17 -1.79 16 19 C 0.06 0.71 7.87 38.82 0.31 1.02 16 20 O -0.37 -5.74 11.31 -28.69 -0.32 -6.07 16 21 C 0.06 0.97 4.98 -37.98 -0.19 0.78 16 22 H 0.12 2.08 6.00 -51.93 -0.31 1.77 16 23 C -0.06 -0.79 1.08 -167.81 -0.18 -0.97 16 24 C -0.12 -1.73 6.82 -26.36 -0.18 -1.91 16 25 C -0.14 -1.69 8.08 -25.72 -0.21 -1.89 16 26 C -0.12 -1.38 6.94 -26.35 -0.18 -1.57 16 27 H 0.01 0.19 6.57 -51.93 -0.34 -0.15 16 28 H 0.08 2.15 6.07 -51.93 -0.32 1.84 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 1.95 6.07 -51.93 -0.32 1.64 16 32 H 0.02 0.40 7.60 -51.93 -0.39 0.01 16 33 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 34 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.06 1.29 6.04 -51.93 -0.31 0.98 16 36 H 0.34 5.69 5.93 -39.29 -0.23 5.45 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.08 1.09 7.03 -51.93 -0.37 0.72 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.09 1.27 7.22 -51.93 -0.37 0.90 16 42 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 44 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.07 0.80 8.03 -51.93 -0.42 0.38 16 46 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 339.72 15.07 5.12 5.12 Total: -1.00 -26.84 339.72 -9.54 -36.37 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -7.95 Total: 6.40 kcal Atomic # 6 Polarization: -21.11 SS G_CDS: -1.45 Total: -22.56 kcal Atomic # 7 Polarization: -35.24 SS G_CDS: 0.09 Total: -35.16 kcal Atomic # 8 Polarization: -5.74 SS G_CDS: -0.32 Total: -6.07 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -26.84 -9.54 -36.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459731987.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.398 kcal (2) G-P(sol) polarization free energy of solvation -26.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds