Wall clock time and date at job start Tue Mar 31 2020 02:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.46843 * 2 1 4 4 C 1.50705 * 109.47014 * 240.00607 * 2 1 3 5 5 H 1.07999 * 120.00281 * 240.00166 * 4 2 1 6 6 C 1.37874 * 120.00059 * 59.99472 * 4 2 1 7 7 N 1.31516 * 120.00185 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00156 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47031 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.46902 * 119.99969 * 8 6 4 11 11 H 1.48495 * 109.47194 * 240.00227 * 8 6 4 12 12 C 1.52995 * 109.47520 * 120.00327 * 2 1 3 13 13 N 1.46900 * 109.47137 * 300.00203 * 12 2 1 14 14 C 1.46903 * 110.99656 * 179.97438 * 13 12 2 15 15 H 1.09000 * 113.50822 * 314.13923 * 14 13 12 16 16 C 1.50995 * 114.52104 * 180.02562 * 14 13 12 17 17 H 1.09006 * 115.08108 * 171.95093 * 16 14 13 18 18 C 1.52775 * 125.71676 * 17.20560 * 16 14 13 19 19 C 1.56110 * 100.12756 * 233.33733 * 18 16 14 20 20 O 1.45481 * 105.74470 * 23.25699 * 19 18 16 21 21 C 1.38634 * 107.03693 * 12.01781 * 20 19 18 22 22 H 1.08994 * 108.90611 * 72.76928 * 21 20 19 23 23 C 1.47443 * 138.30742 * 228.67526 * 21 20 19 24 24 C 1.52720 * 125.47972 * 259.85595 * 23 21 20 25 25 C 1.53986 * 86.71353 * 108.91442 * 24 23 21 26 26 C 1.52739 * 125.44540 * 17.34374 * 23 21 20 27 27 H 1.09003 * 109.46973 * 299.99415 * 1 2 3 28 28 H 1.08994 * 109.47635 * 59.99468 * 1 2 3 29 29 H 1.09004 * 109.47155 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46727 * 180.02562 * 3 2 1 31 31 H 1.08993 * 109.47866 * 300.00327 * 3 2 1 32 32 H 1.09003 * 109.46859 * 60.00515 * 3 2 1 33 33 H 0.96998 * 120.00274 * 180.02562 * 7 6 4 34 34 H 1.09004 * 109.46785 * 59.99922 * 12 2 1 35 35 H 1.09002 * 109.47392 * 179.97438 * 12 2 1 36 36 H 1.00900 * 110.99968 * 56.04547 * 13 12 2 37 37 H 1.09002 * 111.24134 * 115.62270 * 18 16 14 38 38 H 1.09000 * 111.28628 * 351.07475 * 18 16 14 39 39 H 1.09004 * 110.19693 * 264.19085 * 19 18 16 40 40 H 1.08991 * 110.25919 * 142.36506 * 19 18 16 41 41 H 1.09007 * 113.66976 * 223.36997 * 24 23 21 42 42 H 1.08999 * 113.67313 * 354.45954 * 24 23 21 43 43 H 1.08999 * 113.57688 * 269.96161 * 25 24 23 44 44 H 1.09006 * 113.63535 * 139.20313 * 25 24 23 45 45 H 1.08999 * 113.67279 * 5.51058 * 26 23 21 46 46 H 1.08999 * 113.66967 * 136.60500 * 26 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1316 6 6 1.6991 -0.2392 -2.4828 7 7 0.9434 0.8303 -2.6034 8 14 2.3212 -1.1200 -4.0081 9 1 3.1453 -2.2874 -3.6041 10 1 1.1658 -1.5863 -4.8162 11 1 3.1463 -0.1870 -4.8166 12 6 2.0401 -0.7213 1.2491 13 7 1.5504 -0.0289 2.4486 14 6 2.0211 -0.6955 3.6702 15 1 1.9087 -1.7794 3.6449 16 6 1.5619 -0.0474 4.9544 17 1 1.7884 -0.6079 5.8615 18 6 0.4096 0.9465 5.0895 19 6 1.1390 2.1141 5.8254 20 8 2.5516 1.9540 5.5167 21 6 2.6409 1.0213 4.4949 22 1 2.2960 1.4789 3.5678 23 6 3.4042 -0.2012 4.1838 24 6 4.6204 -0.2766 3.2631 25 6 5.4581 -0.5049 4.5349 26 6 4.1765 -1.0450 5.1960 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1299 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9563 0.8901 33 1 0.7086 1.1616 -3.4843 34 1 1.6767 -1.7490 1.2490 35 1 3.1301 -0.7217 1.2489 36 1 0.5439 0.0411 2.4402 37 1 -0.3960 0.5366 5.6987 38 1 0.0427 1.2621 4.1128 39 1 0.9781 2.0398 6.9009 40 1 0.7799 3.0750 5.4573 41 1 4.6063 -1.1329 2.5887 42 1 4.8433 0.6615 2.7548 43 1 5.8261 0.4167 4.9859 44 1 6.2374 -1.2577 4.4156 45 1 4.0455 -0.7192 6.2279 46 1 4.0369 -2.1184 5.0680 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459731987.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:11:47 Heat of formation + Delta-G solvation = 50.646323 kcal Electronic energy + Delta-G solvation = -23696.099240 eV Core-core repulsion = 20589.198704 eV Total energy + Delta-G solvation = -3106.900536 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.17138 -38.96273 -38.30135 -35.96149 -33.93331 -31.96779 -31.17843 -27.52515 -27.24938 -26.76875 -25.89077 -25.64674 -24.16348 -22.76722 -20.77263 -20.27305 -19.25653 -17.89122 -17.73955 -17.08865 -16.76012 -16.42172 -16.13744 -15.70633 -15.43889 -14.89568 -14.77649 -14.36001 -13.97462 -13.60034 -13.32401 -13.26782 -13.09783 -12.97554 -12.94716 -12.54226 -12.48893 -12.37196 -12.29364 -12.14676 -12.07304 -12.01951 -11.72170 -11.34062 -11.25490 -11.04872 -10.85159 -10.55882 -10.46114 -10.32970 -9.94413 -9.00534 -7.96276 -6.12598 1.40798 1.44638 1.53421 2.18428 2.46525 3.04108 3.26355 3.38059 3.38713 3.78110 3.81046 3.87658 3.96825 4.18754 4.36212 4.43365 4.53052 4.58977 4.61353 4.66912 4.72262 4.75997 4.83823 4.85294 4.91304 4.95468 5.03968 5.07686 5.08993 5.16890 5.17378 5.28328 5.29183 5.35676 5.43040 5.49201 5.55397 5.57232 5.71341 5.78046 6.15350 6.25595 6.27521 6.35102 6.49176 6.60751 6.97183 7.55120 9.02019 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.023118 B = 0.005039 C = 0.004499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.870524 B = 5555.622178 C = 6222.759388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.062 3.938 3 C -0.103 4.103 4 C -0.522 4.522 5 H 0.044 0.956 6 C 0.023 3.977 7 N -0.904 5.904 8 Si 0.942 3.058 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.285 1.285 12 C 0.092 3.908 13 N -0.660 5.660 14 C 0.083 3.917 15 H 0.059 0.941 16 C -0.176 4.176 17 H 0.122 0.878 18 C -0.135 4.135 19 C 0.054 3.946 20 O -0.393 6.393 21 C 0.052 3.948 22 H 0.092 0.908 23 C -0.059 4.059 24 C -0.132 4.132 25 C -0.131 4.131 26 C -0.103 4.103 27 H 0.034 0.966 28 H 0.054 0.946 29 H 0.017 0.983 30 H 0.008 0.992 31 H 0.047 0.953 32 H 0.031 0.969 33 H 0.256 0.744 34 H 0.009 0.991 35 H 0.056 0.944 36 H 0.343 0.657 37 H 0.095 0.905 38 H 0.073 0.927 39 H 0.096 0.904 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.049 0.951 43 H 0.075 0.925 44 H 0.081 0.919 45 H 0.077 0.923 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.366 -2.319 17.300 17.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.061 3.939 3 C -0.161 4.161 4 C -0.561 4.561 5 H 0.063 0.937 6 C -0.176 4.176 7 N -0.543 5.543 8 Si 0.769 3.231 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.211 1.211 12 C -0.036 4.036 13 N -0.293 5.293 14 C -0.027 4.027 15 H 0.077 0.923 16 C -0.194 4.194 17 H 0.140 0.860 18 C -0.172 4.172 19 C -0.021 4.021 20 O -0.312 6.312 21 C -0.006 4.006 22 H 0.110 0.890 23 C -0.060 4.060 24 C -0.169 4.169 25 C -0.169 4.169 26 C -0.141 4.141 27 H 0.052 0.948 28 H 0.073 0.927 29 H 0.037 0.963 30 H 0.027 0.973 31 H 0.065 0.935 32 H 0.050 0.950 33 H 0.066 0.934 34 H 0.027 0.973 35 H 0.075 0.925 36 H 0.164 0.836 37 H 0.114 0.886 38 H 0.091 0.909 39 H 0.114 0.886 40 H 0.089 0.911 41 H 0.099 0.901 42 H 0.068 0.932 43 H 0.094 0.906 44 H 0.099 0.901 45 H 0.096 0.904 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.924 -1.627 17.246 17.430 hybrid contribution -0.436 -1.035 -1.463 1.844 sum 1.488 -2.662 15.784 16.076 Atomic orbital electron populations 1.21667 0.98214 0.98096 0.99950 1.18126 0.92317 0.92687 0.90772 1.21445 0.96930 0.98522 0.99155 1.21446 1.30978 1.11756 0.91887 0.93724 1.25511 0.95390 0.95618 1.01116 1.69971 1.37580 1.23632 1.23143 0.85757 0.78067 0.78777 0.80490 1.19611 1.20930 1.21101 1.21859 0.98901 0.93658 0.89206 1.60449 1.16184 1.52357 1.00329 1.22114 0.96162 0.95397 0.89046 0.92293 1.24435 0.98260 0.99252 0.97482 0.86017 1.22545 0.97649 0.95284 1.01730 1.24233 0.78424 0.98618 1.00805 1.87642 1.26598 1.61336 1.55671 1.23104 0.98101 0.87091 0.92344 0.89031 1.22183 0.92624 0.93262 0.97921 1.22720 0.96176 1.01368 0.96642 1.22819 0.96700 1.01403 0.95949 1.22643 0.94339 0.99504 0.97607 0.94760 0.92698 0.96348 0.97295 0.93457 0.95004 0.93407 0.97301 0.92528 0.83590 0.88606 0.90879 0.88569 0.91103 0.90093 0.93172 0.90589 0.90055 0.90436 0.88274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.56 7.92 71.98 0.57 -4.99 16 2 C 0.06 2.90 0.57 -52.93 -0.03 2.87 16 3 C -0.10 -4.97 8.09 71.98 0.58 -4.39 16 4 C -0.52 -27.79 8.01 25.60 0.21 -27.59 16 5 H 0.04 2.39 7.74 -2.91 -0.02 2.36 16 6 C 0.02 1.21 5.15 84.65 0.44 1.65 16 7 N -0.90 -50.25 9.35 21.45 0.20 -50.05 16 8 Si 0.94 43.20 29.54 68.60 2.03 45.23 16 9 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 10 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 11 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 12 C 0.09 3.66 4.51 86.30 0.39 4.05 16 13 N -0.66 -21.63 3.62 -530.98 -1.92 -23.55 16 14 C 0.08 2.28 4.02 37.58 0.15 2.43 16 15 H 0.06 1.59 8.13 -2.39 -0.02 1.57 16 16 C -0.18 -4.14 4.51 -17.08 -0.08 -4.22 16 17 H 0.12 2.55 7.27 -2.38 -0.02 2.53 16 18 C -0.13 -2.84 6.58 31.60 0.21 -2.63 16 19 C 0.05 1.18 7.87 73.06 0.58 1.76 16 20 O -0.39 -11.56 11.31 -125.57 -1.42 -12.98 16 21 C 0.05 1.51 4.98 23.31 0.12 1.63 16 22 H 0.09 3.18 6.00 -2.39 -0.01 3.17 16 23 C -0.06 -1.57 1.08 -60.80 -0.07 -1.64 16 24 C -0.13 -3.72 6.82 30.83 0.21 -3.51 16 25 C -0.13 -2.93 8.08 31.25 0.25 -2.68 16 26 C -0.10 -2.18 6.94 30.84 0.21 -1.96 16 27 H 0.03 1.36 6.57 -2.39 -0.02 1.34 16 28 H 0.05 2.85 6.07 -2.39 -0.01 2.83 16 29 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16 30 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.05 2.54 6.07 -2.39 -0.01 2.52 16 32 H 0.03 1.40 7.60 -2.39 -0.02 1.38 16 33 H 0.26 13.74 8.31 -92.71 -0.77 12.97 16 34 H 0.01 0.35 8.14 -2.38 -0.02 0.33 16 35 H 0.06 2.31 6.04 -2.39 -0.01 2.30 16 36 H 0.34 11.02 5.93 -89.69 -0.53 10.49 16 37 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.07 1.73 7.03 -2.39 -0.02 1.72 16 39 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.08 2.36 7.22 -2.38 -0.02 2.34 16 42 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 45 H 0.08 1.53 8.03 -2.39 -0.02 1.51 16 46 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -57.73 339.72 3.04 -54.68 By element: Atomic # 1 Polarization: 25.48 SS G_CDS: 0.42 Total: 25.90 kcal Atomic # 6 Polarization: -42.96 SS G_CDS: 3.74 Total: -39.23 kcal Atomic # 7 Polarization: -71.89 SS G_CDS: -1.72 Total: -73.60 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: -1.42 Total: -12.98 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -57.73 3.04 -54.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459731987.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.329 kcal (2) G-P(sol) polarization free energy of solvation -57.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds