Wall clock time and date at job start Tue Mar 31 2020 03:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47074 * 2 1 4 4 N 1.46499 * 109.47427 * 119.99946 * 2 1 3 5 5 C 1.46500 * 119.99841 * 294.63387 * 4 2 1 6 6 C 1.50703 * 109.46936 * 269.99508 * 5 4 2 7 7 H 1.08000 * 120.00062 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99805 * 179.97438 * 6 5 4 9 9 N 1.31523 * 119.99747 * 180.02562 * 8 6 5 10 10 Si 1.86791 * 120.00377 * 0.02562 * 8 6 5 11 11 H 1.48496 * 109.47460 * 89.99318 * 10 8 6 12 12 H 1.48499 * 109.47248 * 209.99893 * 10 8 6 13 13 H 1.48509 * 109.46938 * 329.99500 * 10 8 6 14 14 C 1.34777 * 120.00015 * 114.63090 * 4 2 1 15 15 O 1.21614 * 119.99880 * 185.28642 * 14 4 2 16 16 C 1.47100 * 120.00006 * 5.28194 * 14 4 2 17 17 C 1.32999 * 120.00004 * 186.45188 * 16 14 4 18 18 C 1.50706 * 119.99612 * 17.52144 * 17 16 14 19 19 C 1.53002 * 109.46964 * 253.06035 * 18 17 16 20 20 C 1.52998 * 109.47116 * 180.02562 * 19 18 17 21 21 C 1.53002 * 109.47120 * 59.99954 * 20 19 18 22 22 C 1.53002 * 109.47163 * 300.00017 * 21 20 19 23 23 C 1.52998 * 109.47116 * 59.99981 * 22 21 20 24 24 H 1.08998 * 109.46895 * 299.99724 * 1 2 3 25 25 H 1.08999 * 109.47214 * 60.00012 * 1 2 3 26 26 H 1.09001 * 109.46603 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47109 * 240.00115 * 2 1 3 28 28 H 1.09003 * 109.47342 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47091 * 300.00064 * 3 2 1 30 30 H 1.08998 * 109.47035 * 60.00361 * 3 2 1 31 31 H 1.08994 * 109.47531 * 29.99610 * 5 4 2 32 32 H 1.08999 * 109.47393 * 150.00062 * 5 4 2 33 33 H 0.96998 * 119.99898 * 180.02562 * 9 8 6 34 34 H 1.07999 * 120.00167 * 6.17808 * 16 14 4 35 35 H 1.07996 * 119.99732 * 197.52665 * 17 16 14 36 36 H 1.09001 * 109.47525 * 13.06218 * 18 17 16 37 37 H 1.09001 * 109.47149 * 300.00413 * 19 18 17 38 38 H 1.08997 * 109.47334 * 60.00133 * 19 18 17 39 39 H 1.09001 * 109.47079 * 300.00003 * 20 19 18 40 40 H 1.09001 * 109.46903 * 179.97438 * 20 19 18 41 41 H 1.08998 * 109.46852 * 180.02562 * 21 20 19 42 42 H 1.09001 * 109.47105 * 60.00065 * 21 20 19 43 43 H 1.09001 * 109.47149 * 300.00021 * 22 21 20 44 44 H 1.09002 * 109.46990 * 179.97438 * 22 21 20 45 45 H 1.08999 * 109.47619 * 180.02562 * 23 22 21 46 46 H 1.09001 * 109.47079 * 59.99997 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.7640 -0.1252 2.5235 6 6 2.8945 0.7967 2.9019 7 1 3.7201 0.9462 2.2218 8 6 2.8748 1.4493 4.1163 9 7 3.8612 2.2543 4.4463 10 14 1.4473 1.1903 5.2928 11 1 1.7483 0.0479 6.1925 12 1 1.2443 2.4183 6.1028 13 1 0.2142 0.8987 4.5183 14 6 2.7017 -1.8460 1.0754 15 8 3.0236 -2.4688 2.0692 16 6 3.0581 -2.3539 -0.2583 17 6 3.6175 -3.5537 -0.3854 18 6 3.5324 -4.5482 0.7438 19 6 4.8990 -4.6688 1.4212 20 6 4.8128 -5.6788 2.5672 21 6 4.3954 -7.0430 2.0143 22 6 3.0288 -6.9224 1.3369 23 6 3.1150 -5.9124 0.1909 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 3.1300 1.4426 -0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 0.8289 0.4344 2.5070 32 1 1.6924 -0.9310 3.2540 33 1 3.8475 2.7132 5.3007 34 1 2.8614 -1.7543 -1.1348 35 1 4.1329 -3.8153 -1.2977 36 1 2.7948 -4.2095 1.4714 37 1 5.6366 -5.0074 0.6936 38 1 5.1965 -3.6968 1.8147 39 1 4.0751 -5.3405 3.2949 40 1 5.7864 -5.7650 3.0495 41 1 4.3335 -7.7624 2.8308 42 1 5.1331 -7.3813 1.2866 43 1 2.2911 -6.5841 2.0646 44 1 2.7317 -7.8942 0.9426 45 1 2.1414 -5.8260 -0.2915 46 1 3.8527 -6.2506 -0.5368 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491867317.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:25 Heat of formation + Delta-G solvation = -53.788945 kcal Electronic energy + Delta-G solvation = -22988.491882 eV Core-core repulsion = 19877.062693 eV Total energy + Delta-G solvation = -3111.429189 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.06623 -39.37384 -37.53765 -35.01201 -34.51940 -32.54949 -31.56163 -31.07525 -29.55830 -27.95481 -25.39204 -23.67360 -23.38995 -22.85543 -21.47000 -20.67554 -19.08185 -18.96713 -18.23079 -16.87215 -16.43757 -16.08387 -15.80752 -15.24282 -15.01734 -14.93026 -14.78585 -14.48793 -14.43241 -13.98822 -13.89418 -13.56229 -13.46321 -13.30663 -13.01155 -12.94416 -12.73489 -12.63858 -12.36238 -12.32447 -12.04135 -11.96580 -11.92775 -11.65278 -11.51511 -11.36157 -11.14876 -10.86810 -10.80834 -10.33860 -9.93672 -9.25809 -8.31770 -6.33561 0.53187 1.29081 1.32797 1.40824 2.29997 2.34753 2.55214 3.02305 3.71278 3.83021 3.91313 3.97356 4.00539 4.23445 4.29406 4.37260 4.44724 4.46739 4.62786 4.67398 4.69977 4.73057 4.75375 4.85567 4.86135 4.90124 4.91794 4.98081 5.03119 5.08718 5.16512 5.21817 5.28526 5.31884 5.38082 5.40329 5.47931 5.49715 5.54253 5.56386 5.58482 5.78362 5.86900 6.30108 6.66895 6.84674 7.25727 7.54031 8.85007 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.016496 B = 0.005382 C = 0.004554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.963834 B = 5201.528280 C = 6146.956055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.124 3.876 3 C -0.148 4.148 4 N -0.594 5.594 5 C 0.228 3.772 6 C -0.516 4.516 7 H 0.032 0.968 8 C 0.011 3.989 9 N -0.946 5.946 10 Si 0.939 3.061 11 H -0.279 1.279 12 H -0.275 1.275 13 H -0.243 1.243 14 C 0.522 3.478 15 O -0.580 6.580 16 C -0.235 4.235 17 C -0.046 4.046 18 C -0.085 4.085 19 C -0.094 4.094 20 C -0.119 4.119 21 C -0.111 4.111 22 C -0.119 4.119 23 C -0.103 4.103 24 H 0.042 0.958 25 H 0.096 0.904 26 H 0.058 0.942 27 H 0.115 0.885 28 H 0.031 0.969 29 H 0.090 0.910 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.012 0.988 33 H 0.266 0.734 34 H 0.156 0.844 35 H 0.161 0.839 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.026 0.974 39 H 0.034 0.966 40 H 0.060 0.940 41 H 0.065 0.935 42 H 0.077 0.923 43 H 0.042 0.958 44 H 0.082 0.918 45 H 0.065 0.935 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.974 -15.024 -14.325 21.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.022 3.978 3 C -0.206 4.206 4 N -0.324 5.324 5 C 0.106 3.894 6 C -0.554 4.554 7 H 0.051 0.949 8 C -0.186 4.186 9 N -0.587 5.587 10 Si 0.763 3.237 11 H -0.205 1.205 12 H -0.200 1.200 13 H -0.166 1.166 14 C 0.314 3.686 15 O -0.463 6.463 16 C -0.255 4.255 17 C -0.065 4.065 18 C -0.103 4.103 19 C -0.132 4.132 20 C -0.157 4.157 21 C -0.149 4.149 22 C -0.156 4.156 23 C -0.140 4.140 24 H 0.061 0.939 25 H 0.115 0.885 26 H 0.077 0.923 27 H 0.133 0.867 28 H 0.050 0.950 29 H 0.108 0.892 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.031 0.969 33 H 0.075 0.925 34 H 0.174 0.826 35 H 0.178 0.822 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.045 0.955 39 H 0.053 0.947 40 H 0.079 0.921 41 H 0.084 0.916 42 H 0.095 0.905 43 H 0.061 0.939 44 H 0.100 0.900 45 H 0.084 0.916 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.789 -15.182 -13.678 20.988 hybrid contribution -0.042 0.827 1.384 1.613 sum -4.831 -14.355 -12.294 19.508 Atomic orbital electron populations 1.22131 0.93769 1.02365 1.03016 1.21481 0.95349 0.93522 0.87494 1.22036 1.00122 0.96171 1.02257 1.48069 1.53840 1.22700 1.07817 1.19166 0.95722 0.92646 0.81909 1.21503 1.06291 1.25049 1.02592 0.94934 1.25745 0.98770 0.94601 0.99481 1.70046 1.34048 1.31070 1.23514 0.85844 0.80714 0.77806 0.79386 1.20522 1.20025 1.16595 1.19361 0.77548 0.80840 0.90838 1.90663 1.55797 1.58267 1.41567 1.22872 1.07330 0.99978 0.95360 1.24040 0.90122 0.92527 0.99840 1.20749 0.98822 0.94613 0.96151 1.21270 0.96496 0.97836 0.97567 1.21494 1.00564 0.96091 0.97524 1.21506 0.97441 0.95577 1.00333 1.21527 0.97028 0.99538 0.97541 1.21542 1.01826 0.92727 0.97915 0.93862 0.88491 0.92260 0.86737 0.95004 0.89171 0.93884 0.94014 0.96947 0.92502 0.82642 0.82187 0.90888 0.90718 0.95506 0.94703 0.92084 0.91606 0.90480 0.93950 0.89965 0.91645 0.90010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.97 9.26 71.98 0.67 -3.30 16 2 C 0.12 3.85 3.16 44.99 0.14 3.99 16 3 C -0.15 -5.00 8.35 71.98 0.60 -4.40 16 4 N -0.59 -24.90 2.38 -806.38 -1.92 -26.82 16 5 C 0.23 11.46 3.56 85.63 0.30 11.76 16 6 C -0.52 -30.59 8.40 25.60 0.22 -30.38 16 7 H 0.03 2.16 7.78 -2.91 -0.02 2.13 16 8 C 0.01 0.69 5.47 84.65 0.46 1.15 16 9 N -0.95 -60.70 13.96 21.45 0.30 -60.40 16 10 Si 0.94 45.88 27.47 68.60 1.88 47.76 16 11 H -0.28 -13.80 7.11 99.48 0.71 -13.10 16 12 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 13 H -0.24 -10.80 6.54 99.48 0.65 -10.15 16 14 C 0.52 21.83 7.37 86.57 0.64 22.47 16 15 O -0.58 -28.82 12.20 -4.07 -0.05 -28.87 16 16 C -0.24 -6.96 9.26 23.43 0.22 -6.74 16 17 C -0.05 -1.15 8.80 24.52 0.22 -0.93 16 18 C -0.09 -2.40 1.64 -11.54 -0.02 -2.42 16 19 C -0.09 -2.79 4.93 30.59 0.15 -2.64 16 20 C -0.12 -3.29 5.92 30.59 0.18 -3.11 16 21 C -0.11 -2.27 5.92 30.60 0.18 -2.09 16 22 C -0.12 -2.40 5.92 30.59 0.18 -2.22 16 23 C -0.10 -2.08 5.18 30.59 0.16 -1.92 16 24 H 0.04 1.27 6.88 -2.39 -0.02 1.26 16 25 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.12 2.78 5.21 -2.38 -0.01 2.76 16 28 H 0.03 1.22 7.97 -2.39 -0.02 1.20 16 29 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.04 1.73 6.94 -2.39 -0.02 1.72 16 31 H 0.04 1.98 5.76 -2.39 -0.01 1.97 16 32 H 0.01 0.68 6.78 -2.39 -0.02 0.67 16 33 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 34 H 0.16 3.48 5.88 -2.91 -0.02 3.47 16 35 H 0.16 2.65 8.06 -2.91 -0.02 2.62 16 36 H 0.07 2.74 5.33 -2.39 -0.01 2.72 16 37 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.03 1.01 7.53 -2.39 -0.02 0.99 16 39 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 46 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -76.08 350.05 5.38 -70.70 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: 0.87 Total: 18.40 kcal Atomic # 6 Polarization: -25.07 SS G_CDS: 4.30 Total: -20.77 kcal Atomic # 7 Polarization: -85.60 SS G_CDS: -1.62 Total: -87.22 kcal Atomic # 8 Polarization: -28.82 SS G_CDS: -0.05 Total: -28.87 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 1.88 Total: 47.76 kcal Total: -76.08 5.38 -70.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491867317.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.914 kcal (2) G-P(sol) polarization free energy of solvation -76.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds