Wall clock time and date at job start Tue Mar 31 2020 01:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47307 * 2 1 4 4 C 1.53000 * 109.46905 * 172.87892 * 3 2 1 5 5 C 1.52999 * 109.46982 * 201.03185 * 4 3 2 6 6 C 1.53000 * 109.47213 * 292.87638 * 3 2 1 7 7 N 1.46493 * 109.47128 * 177.87641 * 6 3 2 8 8 C 1.46503 * 119.99731 * 278.43285 * 7 6 3 9 9 C 1.50706 * 109.47034 * 274.67548 * 8 7 6 10 10 H 1.08001 * 119.99881 * 359.97438 * 9 8 7 11 11 C 1.37875 * 119.99877 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99971 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 119.99816 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47258 * 0.02562 * 13 11 9 15 15 H 1.48507 * 109.46973 * 120.00068 * 13 11 9 16 16 H 1.48502 * 109.47323 * 239.99583 * 13 11 9 17 17 C 1.34780 * 120.00043 * 98.43521 * 7 6 3 18 18 O 1.21621 * 119.99608 * 175.64006 * 17 7 6 19 19 C 1.47096 * 120.00005 * 355.63894 * 17 7 6 20 20 C 1.32989 * 119.99795 * 185.07907 * 19 17 7 21 21 C 1.50703 * 120.00177 * 6.60905 * 20 19 17 22 22 C 1.52994 * 117.49999 * 247.16018 * 21 20 19 23 23 C 1.52995 * 60.03481 * 252.49774 * 22 21 20 24 24 H 1.08992 * 109.47442 * 185.55453 * 1 2 3 25 25 H 1.08998 * 109.46936 * 305.55991 * 1 2 3 26 26 H 1.09000 * 109.46697 * 65.55850 * 1 2 3 27 27 H 1.09000 * 109.46910 * 239.99751 * 2 1 3 28 28 H 1.09000 * 109.46899 * 120.00099 * 2 1 3 29 29 H 1.09002 * 109.46913 * 52.87404 * 3 2 1 30 30 H 1.09000 * 109.46802 * 321.02787 * 4 3 2 31 31 H 1.08995 * 109.47281 * 81.03093 * 4 3 2 32 32 H 1.08994 * 109.47392 * 188.52590 * 5 4 3 33 33 H 1.09009 * 109.46908 * 308.52760 * 5 4 3 34 34 H 1.09003 * 109.47141 * 68.51809 * 5 4 3 35 35 H 1.09002 * 109.47251 * 57.87421 * 6 3 2 36 36 H 1.09003 * 109.46787 * 297.87654 * 6 3 2 37 37 H 1.08997 * 109.47469 * 34.67453 * 8 7 6 38 38 H 1.09004 * 109.46844 * 154.67857 * 8 7 6 39 39 H 0.97004 * 119.99871 * 179.97438 * 12 11 9 40 40 H 1.07998 * 120.00298 * 5.07816 * 19 17 7 41 41 H 1.08004 * 120.00129 * 186.61023 * 20 19 17 42 42 H 1.09002 * 115.55083 * 32.83840 * 21 20 19 43 43 H 1.08998 * 117.49977 * 0.02562 * 22 21 20 44 44 H 1.09000 * 117.49554 * 144.99780 * 22 21 20 45 45 H 1.09002 * 117.49287 * 107.49917 * 23 22 21 46 46 H 1.08997 * 117.50370 * 252.52379 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5596 1.4461 0.1788 5 6 4.0089 2.8139 0.6965 6 6 1.6814 2.1103 -1.3290 7 7 2.1249 3.5063 -1.3094 8 6 1.3031 4.5268 -0.6540 9 6 0.2614 5.0296 -1.6201 10 1 0.2164 4.6293 -2.6222 11 6 -0.6334 6.0013 -1.2250 12 7 -0.5782 6.4890 -0.0049 13 14 -1.9241 6.6249 -2.4227 14 1 -1.7758 5.9203 -3.7215 15 1 -3.2781 6.3651 -1.8709 16 1 -1.7449 8.0848 -2.6277 17 6 3.2889 3.8519 -1.8943 18 8 3.6189 5.0213 -1.9477 19 6 4.1601 2.8148 -2.4681 20 6 5.3535 3.1433 -2.9544 21 6 5.8762 4.5466 -2.7847 22 6 6.0296 5.4005 -4.0448 23 6 7.2706 4.8534 -3.3367 24 1 -0.3634 -1.0227 0.0995 25 1 -0.3633 0.5976 0.8360 26 1 -0.3633 0.4252 -0.9356 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.5764 1.9918 0.8194 30 1 3.8428 0.6754 0.8957 31 1 4.0387 1.2449 -0.7793 32 1 5.0973 2.8689 0.6805 33 1 3.5961 3.5968 0.0601 34 1 3.6531 2.9508 1.7177 35 1 0.6017 2.0740 -1.4742 36 1 2.1756 1.5835 -2.1453 37 1 0.8116 4.0933 0.2170 38 1 1.9365 5.3560 -0.3387 39 1 -1.2076 7.1729 0.2730 40 1 3.8307 1.7867 -2.4944 41 1 5.9482 2.4044 -3.4710 42 1 5.5753 5.0526 -1.8673 43 1 5.7521 4.9476 -4.9966 44 1 5.8296 6.4684 -3.9565 45 1 7.8098 4.0403 -3.8227 46 1 7.8867 5.5612 -2.7822 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491937996.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:18:35 Heat of formation + Delta-G solvation = 2.388352 kcal Electronic energy + Delta-G solvation = -23255.982986 eV Core-core repulsion = 20146.989827 eV Total energy + Delta-G solvation = -3108.993159 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.76541 -37.47281 -36.49140 -34.02013 -32.63051 -32.00743 -31.53990 -28.09755 -27.09304 -24.46206 -24.02912 -22.19454 -22.04906 -21.70879 -20.41485 -19.87559 -17.84413 -16.77870 -16.39827 -15.60612 -15.25446 -14.84958 -14.33251 -14.16778 -13.97469 -13.52610 -13.23998 -13.03189 -12.96253 -12.38706 -12.32711 -12.19022 -11.89092 -11.42916 -11.38954 -11.30380 -11.21085 -11.19108 -10.95080 -10.72353 -10.68578 -10.52940 -10.37759 -10.33086 -10.18984 -10.03607 -9.88967 -9.46126 -8.83189 -8.53786 -8.40886 -7.44975 -6.01238 -4.05584 1.79147 3.30808 3.38530 3.42600 3.96098 4.04682 4.27376 4.47866 4.82562 4.98137 5.06101 5.09083 5.19384 5.31705 5.32750 5.40284 5.44405 5.55538 5.62563 5.68102 5.72194 5.74810 5.78953 5.84689 5.99174 6.08465 6.11803 6.16481 6.25507 6.31356 6.32624 6.32761 6.45756 6.52270 6.53256 6.57551 6.69232 6.81306 6.87233 7.20047 7.49165 7.62310 7.95690 8.27941 8.51623 8.94890 9.18124 9.59591 11.06445 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.010796 B = 0.007282 C = 0.004872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2592.827363 B = 3844.333668 C = 5745.670115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.113 4.113 3 C -0.110 4.110 4 C -0.115 4.115 5 C -0.171 4.171 6 C 0.116 3.884 7 N -0.591 5.591 8 C 0.248 3.752 9 C -0.523 4.523 10 H 0.057 0.943 11 C 0.061 3.939 12 N -0.895 5.895 13 Si 0.895 3.105 14 H -0.274 1.274 15 H -0.284 1.284 16 H -0.283 1.283 17 C 0.539 3.461 18 O -0.536 6.536 19 C -0.205 4.205 20 C -0.059 4.059 21 C -0.116 4.116 22 C -0.158 4.158 23 C -0.193 4.193 24 H 0.047 0.953 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.078 0.922 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.042 0.958 33 H 0.084 0.916 34 H 0.047 0.953 35 H 0.080 0.920 36 H 0.066 0.934 37 H 0.030 0.970 38 H 0.044 0.956 39 H 0.262 0.738 40 H 0.126 0.874 41 H 0.117 0.883 42 H 0.135 0.865 43 H 0.088 0.912 44 H 0.095 0.905 45 H 0.087 0.913 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.761 -12.442 -2.319 15.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.151 4.151 3 C -0.130 4.130 4 C -0.153 4.153 5 C -0.228 4.228 6 C -0.008 4.008 7 N -0.321 5.321 8 C 0.129 3.871 9 C -0.562 4.562 10 H 0.075 0.925 11 C -0.141 4.141 12 N -0.534 5.534 13 Si 0.723 3.277 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.209 1.209 17 C 0.329 3.671 18 O -0.416 6.416 19 C -0.225 4.225 20 C -0.079 4.079 21 C -0.133 4.133 22 C -0.195 4.195 23 C -0.230 4.230 24 H 0.067 0.933 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.096 0.904 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.061 0.939 33 H 0.102 0.898 34 H 0.066 0.934 35 H 0.098 0.902 36 H 0.085 0.915 37 H 0.048 0.952 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.143 0.857 41 H 0.135 0.865 42 H 0.153 0.847 43 H 0.106 0.894 44 H 0.113 0.887 45 H 0.106 0.894 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 9.799 -11.674 -2.216 15.402 hybrid contribution -0.903 0.204 -0.566 1.085 sum 8.896 -11.470 -2.782 14.779 Atomic orbital electron populations 1.21833 0.95802 1.00964 1.02674 1.21516 0.96002 0.96149 1.01437 1.21697 0.95921 0.95642 0.99698 1.21633 0.95238 0.97555 1.00844 1.22231 1.00124 0.98674 1.01803 1.21591 1.00932 0.82395 0.95882 1.48177 1.20723 1.08581 1.54667 1.19220 0.89484 0.86115 0.92328 1.21484 1.14295 1.21496 0.98890 0.92472 1.24921 0.97721 0.96169 0.95275 1.69945 1.37342 1.28810 1.17315 0.86490 0.81165 0.78814 0.81233 1.19842 1.21022 1.20943 1.18244 0.81783 0.88471 0.78578 1.90729 1.73012 1.19444 1.58426 1.22998 0.96430 0.99520 1.03578 1.22918 0.94920 0.95678 0.94369 1.21544 0.96890 0.94334 1.00578 1.22749 1.00925 0.99893 0.95895 1.23063 0.91079 1.03710 1.05187 0.93345 0.92450 0.92203 0.92302 0.92269 0.90358 0.92899 0.91974 0.93861 0.89753 0.93415 0.90192 0.91533 0.95220 0.93817 0.92865 0.85659 0.86528 0.84750 0.89362 0.88691 0.89405 0.89033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.83 9.58 37.16 0.36 -1.47 16 2 C -0.11 -1.29 5.35 -26.73 -0.14 -1.43 16 3 C -0.11 -1.56 2.12 -90.62 -0.19 -1.75 16 4 C -0.12 -1.55 4.99 -26.73 -0.13 -1.68 16 5 C -0.17 -2.73 8.99 37.16 0.33 -2.39 16 6 C 0.12 1.91 4.71 -4.05 -0.02 1.89 16 7 N -0.59 -12.25 1.35 -176.45 -0.24 -12.48 16 8 C 0.25 6.38 4.74 -5.19 -0.02 6.36 16 9 C -0.52 -14.76 9.38 -34.44 -0.32 -15.08 16 10 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 11 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 12 N -0.89 -26.60 13.29 55.43 0.74 -25.87 16 13 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 14 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 15 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 16 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 17 C 0.54 11.00 4.72 -12.67 -0.06 10.94 16 18 O -0.54 -12.90 12.82 5.26 0.07 -12.83 16 19 C -0.20 -3.18 7.08 -37.81 -0.27 -3.45 16 20 C -0.06 -0.83 9.74 -36.13 -0.35 -1.18 16 21 C -0.12 -1.79 4.37 -91.73 -0.40 -2.19 16 22 C -0.16 -2.26 10.23 -26.74 -0.27 -2.53 16 23 C -0.19 -2.37 10.24 -26.69 -0.27 -2.65 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.06 0.74 6.85 -51.93 -0.36 0.38 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.63 7.98 -51.93 -0.41 0.21 16 29 H 0.08 1.29 7.64 -51.93 -0.40 0.89 16 30 H 0.05 0.63 7.85 -51.93 -0.41 0.22 16 31 H 0.06 0.78 5.08 -51.93 -0.26 0.52 16 32 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.08 1.62 3.19 -51.92 -0.17 1.45 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.08 1.39 6.66 -51.93 -0.35 1.05 16 36 H 0.07 0.94 5.74 -51.93 -0.30 0.64 16 37 H 0.03 0.78 7.79 -51.93 -0.40 0.38 16 38 H 0.04 1.28 7.35 -51.93 -0.38 0.89 16 39 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 40 H 0.13 1.62 4.85 -52.49 -0.25 1.37 16 41 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 42 H 0.14 2.50 6.19 -51.93 -0.32 2.17 16 43 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 45 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 46 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 354.63 15.07 5.34 5.34 Total: -1.00 -31.11 354.63 -8.76 -39.87 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -7.78 Total: 4.00 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: -1.87 Total: -14.99 kcal Atomic # 7 Polarization: -38.85 SS G_CDS: 0.50 Total: -38.35 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: 0.07 Total: -12.83 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.11 -8.76 -39.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491937996.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.261 kcal (2) G-P(sol) polarization free energy of solvation -31.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds