Wall clock time and date at job start Tue Mar 31 2020 01:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46812 * 2 1 4 4 C 1.52993 * 109.47382 * 120.00259 * 2 1 3 5 5 C 1.52999 * 109.46956 * 65.00049 * 4 2 1 6 6 N 1.46505 * 109.46880 * 180.02562 * 5 4 2 7 7 C 1.46499 * 120.00087 * 269.99927 * 6 5 4 8 8 C 1.50706 * 109.47239 * 270.00312 * 7 6 5 9 9 H 1.07997 * 119.99945 * 359.97438 * 8 7 6 10 10 C 1.37875 * 119.99985 * 180.02562 * 8 7 6 11 11 N 1.31513 * 119.99930 * 359.97438 * 10 8 7 12 12 Si 1.86794 * 120.00100 * 179.97438 * 10 8 7 13 13 H 1.48507 * 109.46881 * 359.97438 * 12 10 8 14 14 H 1.48496 * 109.47204 * 119.99317 * 12 10 8 15 15 H 1.48499 * 109.47508 * 239.99634 * 12 10 8 16 16 C 1.34782 * 119.99753 * 90.00102 * 6 5 4 17 17 O 1.21608 * 120.00351 * 0.02562 * 16 6 5 18 18 C 1.47106 * 119.99637 * 179.97438 * 16 6 5 19 19 C 1.32989 * 119.99898 * 172.56989 * 18 16 6 20 20 C 1.50707 * 120.00036 * 351.34286 * 19 18 16 21 21 C 1.53779 * 113.61486 * 210.70133 * 20 19 18 22 22 C 1.53959 * 87.01767 * 220.04977 * 21 20 19 23 23 C 1.53781 * 87.11429 * 25.36186 * 22 21 20 24 24 H 1.09003 * 109.47202 * 60.00250 * 1 2 3 25 25 H 1.09007 * 109.46879 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46935 * 299.99472 * 1 2 3 27 27 H 1.08999 * 109.46935 * 240.00528 * 2 1 3 28 28 H 1.09001 * 109.47100 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.47617 * 300.00292 * 3 2 1 30 30 H 1.08999 * 109.46940 * 60.00531 * 3 2 1 31 31 H 1.09001 * 109.47282 * 305.00426 * 4 2 1 32 32 H 1.09004 * 109.47476 * 185.00371 * 4 2 1 33 33 H 1.08997 * 109.47529 * 60.00652 * 5 4 2 34 34 H 1.08999 * 109.47469 * 299.99722 * 5 4 2 35 35 H 1.08995 * 109.47336 * 30.00135 * 7 6 5 36 36 H 1.08997 * 109.46983 * 150.00029 * 7 6 5 37 37 H 0.96998 * 119.99873 * 180.02562 * 11 10 8 38 38 H 1.08003 * 120.00307 * 352.29414 * 18 16 6 39 39 H 1.07996 * 120.00538 * 171.34205 * 19 18 16 40 40 H 1.08999 * 112.84710 * 341.89959 * 20 19 18 41 41 H 1.08991 * 113.61469 * 334.56443 * 21 20 19 42 42 H 1.09002 * 113.61574 * 105.47432 * 21 20 19 43 43 H 1.09008 * 113.53676 * 270.81562 * 22 21 20 44 44 H 1.08992 * 113.74926 * 139.94446 * 22 21 20 45 45 H 1.09000 * 113.61858 * 220.09973 * 23 22 21 46 46 H 1.08998 * 113.61722 * 89.18591 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6353 -2.1955 1.1878 6 7 2.1232 -2.8860 2.3842 7 6 3.4515 -3.5040 2.3829 8 6 3.3410 -4.9312 1.9117 9 1 2.3777 -5.3374 1.6408 10 6 4.4696 -5.7187 1.8275 11 7 5.6426 -5.2242 2.1578 12 14 4.3327 -7.4879 1.2442 13 1 2.9136 -7.7992 0.9365 14 1 5.1563 -7.6714 0.0222 15 1 4.8191 -8.3999 2.3105 16 6 1.3500 -2.9527 3.4862 17 8 0.2472 -2.4401 3.4872 18 6 1.8397 -3.6465 4.6873 19 6 1.1444 -3.5871 5.8194 20 6 -0.0356 -2.6563 5.9311 21 6 -0.2676 -2.1238 7.3550 22 6 -1.7734 -2.3071 7.0916 23 6 -1.3837 -3.3840 6.0654 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4426 0.0005 29 1 1.6766 1.9565 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6054 -0.2619 2.1369 32 1 3.1264 -0.6443 1.2951 33 1 2.0700 -2.6550 0.3001 34 1 0.5490 -2.2725 1.1419 35 1 4.1092 -2.9502 1.7130 36 1 3.8619 -3.4854 3.3924 37 1 6.4367 -5.7781 2.0982 38 1 2.7616 -4.2079 4.6486 39 1 1.4253 -4.2058 6.6588 40 1 -0.0339 -1.8775 5.1685 41 1 0.1220 -2.7782 8.1347 42 1 0.0302 -1.0835 7.4860 43 1 -2.2473 -1.4317 6.6473 44 1 -2.3242 -2.6981 7.9470 45 1 -1.9854 -3.3596 5.1568 46 1 -1.2996 -4.3836 6.4919 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492049988.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:45:18 Heat of formation + Delta-G solvation = -18.990788 kcal Electronic energy + Delta-G solvation = -22463.508085 eV Core-core repulsion = 19353.587858 eV Total energy + Delta-G solvation = -3109.920228 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.50801 -38.18683 -36.49255 -34.69756 -32.62811 -32.28204 -29.24326 -27.01660 -26.98583 -25.49693 -25.26775 -23.34366 -22.96357 -20.62910 -19.70552 -19.30119 -17.81345 -16.60075 -16.35989 -15.51807 -15.09221 -14.96565 -14.61316 -14.39062 -13.68115 -13.64450 -13.36176 -12.83584 -12.51738 -12.43070 -12.28828 -12.20851 -12.07732 -12.00741 -11.79811 -11.62283 -11.36997 -10.98846 -10.95742 -10.76003 -10.71441 -10.47756 -10.39557 -10.27313 -10.22796 -10.01499 -9.78527 -9.67471 -8.77346 -8.63153 -8.48748 -7.60551 -6.17511 -4.24682 2.01443 3.21811 3.30493 3.35298 4.01291 4.06641 4.35715 4.92335 4.97138 5.01499 5.08288 5.15360 5.15826 5.16776 5.34901 5.46294 5.66250 5.70426 5.74333 5.85663 5.88006 5.91879 5.92456 5.98822 6.03667 6.04854 6.07006 6.15066 6.24132 6.30442 6.33171 6.36645 6.42008 6.44424 6.64940 6.70890 6.77110 6.87741 6.96284 7.15267 7.24188 7.61721 7.78622 8.07741 8.41339 8.82397 9.10462 9.43450 10.88991 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.009049 B = 0.006630 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3093.467288 B = 4222.415618 C = 6681.873178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 C -0.144 4.144 4 C -0.126 4.126 5 C 0.119 3.881 6 N -0.590 5.590 7 C 0.236 3.764 8 C -0.535 4.535 9 H 0.061 0.939 10 C 0.064 3.936 11 N -0.892 5.892 12 Si 0.896 3.104 13 H -0.272 1.272 14 H -0.283 1.283 15 H -0.282 1.282 16 C 0.544 3.456 17 O -0.569 6.569 18 C -0.188 4.188 19 C -0.087 4.087 20 C -0.097 4.097 21 C -0.141 4.141 22 C -0.141 4.141 23 C -0.122 4.122 24 H 0.047 0.953 25 H 0.058 0.942 26 H 0.053 0.947 27 H 0.069 0.931 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.035 0.965 36 H 0.039 0.961 37 H 0.264 0.736 38 H 0.138 0.862 39 H 0.115 0.885 40 H 0.135 0.865 41 H 0.074 0.926 42 H 0.062 0.938 43 H 0.076 0.924 44 H 0.060 0.940 45 H 0.067 0.933 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.310 8.042 3.303 12.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 C -0.202 4.202 4 C -0.165 4.165 5 C -0.004 4.004 6 N -0.319 5.319 7 C 0.117 3.883 8 C -0.573 4.573 9 H 0.079 0.921 10 C -0.139 4.139 11 N -0.531 5.531 12 Si 0.723 3.277 13 H -0.197 1.197 14 H -0.209 1.209 15 H -0.208 1.208 16 C 0.335 3.665 17 O -0.453 6.453 18 C -0.209 4.209 19 C -0.107 4.107 20 C -0.115 4.115 21 C -0.178 4.178 22 C -0.178 4.178 23 C -0.160 4.160 24 H 0.066 0.934 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.088 0.912 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.053 0.947 36 H 0.057 0.943 37 H 0.074 0.926 38 H 0.156 0.844 39 H 0.133 0.867 40 H 0.152 0.848 41 H 0.093 0.907 42 H 0.081 0.919 43 H 0.095 0.905 44 H 0.079 0.921 45 H 0.086 0.914 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.635 8.244 3.274 12.380 hybrid contribution 0.399 -1.264 -0.334 1.367 sum -8.237 6.981 2.940 11.190 Atomic orbital electron populations 1.21869 0.95370 1.02041 1.01064 1.21052 0.95821 0.95880 0.98562 1.21821 1.00903 0.96231 1.01229 1.21985 1.01000 0.95997 0.97526 1.21339 0.99822 0.90952 0.88303 1.48163 1.19169 1.52782 1.11755 1.19453 0.77664 0.92739 0.98492 1.21561 0.94123 0.96441 1.45201 0.92089 1.24940 0.95090 0.98735 0.95105 1.69935 0.98470 1.36768 1.47919 0.86473 0.78304 0.84423 0.78492 1.19675 1.20865 1.20828 1.18558 0.84320 0.79381 0.84221 1.90532 1.21364 1.49998 1.83374 1.22992 1.01746 1.02857 0.93265 1.23494 0.94887 0.95535 0.96750 1.22311 0.92413 0.99278 0.97475 1.23045 0.96283 1.00872 0.97607 1.22821 0.96364 0.99545 0.99108 1.22713 0.96868 0.97415 0.98983 0.93372 0.92269 0.92797 0.91228 0.92786 0.93096 0.92941 0.92025 0.91918 0.90790 0.90837 0.94693 0.94288 0.92609 0.84437 0.86747 0.84755 0.90715 0.91948 0.90509 0.92129 0.91385 0.90932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 8.95 37.16 0.33 -1.52 16 2 C -0.09 -1.25 2.92 -90.62 -0.26 -1.51 16 3 C -0.14 -1.68 9.19 37.16 0.34 -1.33 16 4 C -0.13 -2.03 5.01 -26.73 -0.13 -2.16 16 5 C 0.12 2.22 5.16 -4.04 -0.02 2.20 16 6 N -0.59 -12.56 2.46 -176.45 -0.43 -13.00 16 7 C 0.24 5.65 4.83 -5.19 -0.03 5.63 16 8 C -0.53 -14.01 9.39 -34.44 -0.32 -14.33 16 9 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 10 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 11 N -0.89 -24.61 13.29 55.43 0.74 -23.88 16 12 Si 0.90 20.68 29.54 -169.99 -5.02 15.65 16 13 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 14 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 15 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 16 C 0.54 11.46 7.49 -12.66 -0.09 11.37 16 17 O -0.57 -12.21 12.72 5.27 0.07 -12.15 16 18 C -0.19 -3.65 9.12 -37.81 -0.34 -3.99 16 19 C -0.09 -1.43 9.29 -36.12 -0.34 -1.77 16 20 C -0.10 -1.52 2.93 -90.95 -0.27 -1.79 16 21 C -0.14 -1.79 7.64 -25.83 -0.20 -1.98 16 22 C -0.14 -1.70 8.09 -25.82 -0.21 -1.91 16 23 C -0.12 -1.74 7.63 -25.92 -0.20 -1.94 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.79 6.57 -51.93 -0.34 0.45 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.07 1.39 8.07 -51.93 -0.42 0.97 16 34 H 0.07 1.38 5.84 -51.93 -0.30 1.07 16 35 H 0.04 0.88 8.07 -51.93 -0.42 0.46 16 36 H 0.04 0.96 6.21 -51.93 -0.32 0.64 16 37 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 38 H 0.14 2.82 6.38 -52.48 -0.33 2.48 16 39 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 40 H 0.14 2.46 5.25 -51.99 -0.27 2.19 16 41 H 0.07 0.87 8.09 -51.93 -0.42 0.45 16 42 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.08 0.91 8.14 -51.92 -0.42 0.48 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 46 H 0.07 0.97 8.09 -51.93 -0.42 0.55 16 LS Contribution 366.87 15.07 5.53 5.53 Total: -1.00 -27.56 366.87 -9.25 -36.81 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -8.29 Total: 4.48 kcal Atomic # 6 Polarization: -11.62 SS G_CDS: -1.84 Total: -13.45 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: 0.30 Total: -36.87 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: 0.07 Total: -12.15 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -27.56 -9.25 -36.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492049988.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.819 kcal (2) G-P(sol) polarization free energy of solvation -27.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds