Wall clock time and date at job start Tue Mar 31 2020 01:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46812 * 2 1 4 4 C 1.52993 * 109.47382 * 120.00259 * 2 1 3 5 5 C 1.52999 * 109.46956 * 65.00049 * 4 2 1 6 6 N 1.46505 * 109.46880 * 180.02562 * 5 4 2 7 7 C 1.46499 * 120.00087 * 269.99927 * 6 5 4 8 8 C 1.50706 * 109.47239 * 270.00312 * 7 6 5 9 9 H 1.07997 * 119.99945 * 359.97438 * 8 7 6 10 10 C 1.37875 * 119.99985 * 180.02562 * 8 7 6 11 11 N 1.31513 * 119.99930 * 359.97438 * 10 8 7 12 12 Si 1.86794 * 120.00100 * 179.97438 * 10 8 7 13 13 H 1.48507 * 109.46881 * 359.97438 * 12 10 8 14 14 H 1.48496 * 109.47204 * 119.99317 * 12 10 8 15 15 H 1.48499 * 109.47508 * 239.99634 * 12 10 8 16 16 C 1.34782 * 119.99753 * 90.00102 * 6 5 4 17 17 O 1.21608 * 120.00351 * 0.02562 * 16 6 5 18 18 C 1.47106 * 119.99637 * 179.97438 * 16 6 5 19 19 C 1.32989 * 119.99898 * 172.56989 * 18 16 6 20 20 C 1.50707 * 120.00036 * 351.34286 * 19 18 16 21 21 C 1.53779 * 113.61486 * 210.70133 * 20 19 18 22 22 C 1.53959 * 87.01767 * 220.04977 * 21 20 19 23 23 C 1.53781 * 87.11429 * 25.36186 * 22 21 20 24 24 H 1.09003 * 109.47202 * 60.00250 * 1 2 3 25 25 H 1.09007 * 109.46879 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46935 * 299.99472 * 1 2 3 27 27 H 1.08999 * 109.46935 * 240.00528 * 2 1 3 28 28 H 1.09001 * 109.47100 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.47617 * 300.00292 * 3 2 1 30 30 H 1.08999 * 109.46940 * 60.00531 * 3 2 1 31 31 H 1.09001 * 109.47282 * 305.00426 * 4 2 1 32 32 H 1.09004 * 109.47476 * 185.00371 * 4 2 1 33 33 H 1.08997 * 109.47529 * 60.00652 * 5 4 2 34 34 H 1.08999 * 109.47469 * 299.99722 * 5 4 2 35 35 H 1.08995 * 109.47336 * 30.00135 * 7 6 5 36 36 H 1.08997 * 109.46983 * 150.00029 * 7 6 5 37 37 H 0.96998 * 119.99873 * 180.02562 * 11 10 8 38 38 H 1.08003 * 120.00307 * 352.29414 * 18 16 6 39 39 H 1.07996 * 120.00538 * 171.34205 * 19 18 16 40 40 H 1.08999 * 112.84710 * 341.89959 * 20 19 18 41 41 H 1.08991 * 113.61469 * 334.56443 * 21 20 19 42 42 H 1.09002 * 113.61574 * 105.47432 * 21 20 19 43 43 H 1.09008 * 113.53676 * 270.81562 * 22 21 20 44 44 H 1.08992 * 113.74926 * 139.94446 * 22 21 20 45 45 H 1.09000 * 113.61858 * 220.09973 * 23 22 21 46 46 H 1.08998 * 113.61722 * 89.18591 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6353 -2.1955 1.1878 6 7 2.1232 -2.8860 2.3842 7 6 3.4515 -3.5040 2.3829 8 6 3.3410 -4.9312 1.9117 9 1 2.3777 -5.3374 1.6408 10 6 4.4696 -5.7187 1.8275 11 7 5.6426 -5.2242 2.1578 12 14 4.3327 -7.4879 1.2442 13 1 2.9136 -7.7992 0.9365 14 1 5.1563 -7.6714 0.0222 15 1 4.8191 -8.3999 2.3105 16 6 1.3500 -2.9527 3.4862 17 8 0.2472 -2.4401 3.4872 18 6 1.8397 -3.6465 4.6873 19 6 1.1444 -3.5871 5.8194 20 6 -0.0356 -2.6563 5.9311 21 6 -0.2676 -2.1238 7.3550 22 6 -1.7734 -2.3071 7.0916 23 6 -1.3837 -3.3840 6.0654 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4426 0.0005 29 1 1.6766 1.9565 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6054 -0.2619 2.1369 32 1 3.1264 -0.6443 1.2951 33 1 2.0700 -2.6550 0.3001 34 1 0.5490 -2.2725 1.1419 35 1 4.1092 -2.9502 1.7130 36 1 3.8619 -3.4854 3.3924 37 1 6.4367 -5.7781 2.0982 38 1 2.7616 -4.2079 4.6486 39 1 1.4253 -4.2058 6.6588 40 1 -0.0339 -1.8775 5.1685 41 1 0.1220 -2.7782 8.1347 42 1 0.0302 -1.0835 7.4860 43 1 -2.2473 -1.4317 6.6473 44 1 -2.3242 -2.6981 7.9470 45 1 -1.9854 -3.3596 5.1568 46 1 -1.2996 -4.3836 6.4919 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492049988.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:45:17 Heat of formation + Delta-G solvation = -30.620707 kcal Electronic energy + Delta-G solvation = -22464.012397 eV Core-core repulsion = 19353.587858 eV Total energy + Delta-G solvation = -3110.424539 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.04847 -39.43938 -37.78247 -36.36382 -34.50380 -33.77110 -30.72048 -28.86834 -28.01395 -26.75260 -26.36482 -25.00755 -24.59311 -22.04521 -20.88715 -20.44196 -19.46322 -18.53200 -18.02318 -17.08377 -16.35375 -16.29556 -16.19677 -15.89292 -15.14494 -14.84507 -14.64258 -14.33304 -14.16982 -13.90217 -13.72624 -13.45174 -13.27304 -13.13842 -13.13642 -13.07928 -12.80901 -12.75042 -12.57113 -12.26803 -12.07242 -11.93094 -11.58250 -11.56806 -11.52234 -11.42134 -11.36247 -11.02089 -10.64686 -10.23088 -10.05725 -9.33700 -8.21446 -6.36752 0.54200 1.38507 1.41386 1.52496 2.31031 2.46456 2.49741 3.07928 3.77848 3.84266 3.90366 3.93693 3.96601 4.02800 4.07486 4.20710 4.35422 4.40635 4.56237 4.63837 4.69723 4.76398 4.81517 4.86795 4.89711 4.90466 4.94106 5.01943 5.08001 5.10725 5.11860 5.14691 5.18576 5.19033 5.27128 5.31613 5.46082 5.49466 5.53136 5.59314 5.66959 5.84430 5.93353 6.05522 6.59955 6.83417 7.32049 7.46316 8.83936 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.009049 B = 0.006630 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3093.467288 B = 4222.415618 C = 6681.873178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.092 4.092 3 C -0.141 4.141 4 C -0.114 4.114 5 C 0.118 3.882 6 N -0.599 5.599 7 C 0.255 3.745 8 C -0.545 4.545 9 H 0.048 0.952 10 C 0.022 3.978 11 N -0.920 5.920 12 Si 0.958 3.042 13 H -0.273 1.273 14 H -0.276 1.276 15 H -0.275 1.275 16 C 0.538 3.462 17 O -0.578 6.578 18 C -0.229 4.229 19 C -0.051 4.051 20 C -0.115 4.115 21 C -0.129 4.129 22 C -0.129 4.129 23 C -0.124 4.124 24 H 0.070 0.930 25 H 0.045 0.955 26 H 0.048 0.952 27 H 0.073 0.927 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.052 0.948 31 H 0.049 0.951 32 H 0.053 0.947 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.018 0.982 36 H 0.028 0.972 37 H 0.268 0.732 38 H 0.121 0.879 39 H 0.147 0.853 40 H 0.106 0.894 41 H 0.094 0.906 42 H 0.067 0.933 43 H 0.076 0.924 44 H 0.084 0.916 45 H 0.048 0.952 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.299 7.985 4.201 12.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.111 4.111 3 C -0.198 4.198 4 C -0.153 4.153 5 C -0.004 4.004 6 N -0.327 5.327 7 C 0.134 3.866 8 C -0.583 4.583 9 H 0.066 0.934 10 C -0.179 4.179 11 N -0.559 5.559 12 Si 0.783 3.217 13 H -0.198 1.198 14 H -0.202 1.202 15 H -0.201 1.201 16 C 0.331 3.669 17 O -0.463 6.463 18 C -0.249 4.249 19 C -0.071 4.071 20 C -0.133 4.133 21 C -0.166 4.166 22 C -0.167 4.167 23 C -0.161 4.161 24 H 0.089 0.911 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.092 0.908 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.036 0.964 36 H 0.046 0.954 37 H 0.077 0.923 38 H 0.139 0.861 39 H 0.164 0.836 40 H 0.123 0.877 41 H 0.113 0.887 42 H 0.086 0.914 43 H 0.095 0.905 44 H 0.103 0.897 45 H 0.067 0.933 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.636 8.203 4.168 13.324 hybrid contribution 0.647 -1.223 -0.557 1.491 sum -8.988 6.981 3.612 11.940 Atomic orbital electron populations 1.21832 0.94737 1.01470 1.01932 1.21056 0.96320 0.96789 0.96898 1.21786 1.00887 0.94885 1.02231 1.21868 1.00280 0.94425 0.98734 1.21446 0.99467 0.92315 0.87213 1.48177 1.18433 1.53284 1.12832 1.19050 0.78670 0.91805 0.97116 1.21689 0.93672 0.97569 1.45380 0.93360 1.25651 0.94694 1.02448 0.95070 1.70019 0.99076 1.38242 1.48608 0.85510 0.78090 0.79839 0.78258 1.19807 1.20168 1.20060 1.18877 0.84203 0.79233 0.84608 1.90534 1.21550 1.50555 1.83658 1.22807 1.02748 1.05322 0.94065 1.23937 0.93319 0.93642 0.96158 1.22324 0.92890 0.98892 0.99177 1.23022 0.96613 1.01459 0.95496 1.22775 0.96300 0.98597 0.98984 1.22744 0.95457 0.98752 0.99165 0.91088 0.93561 0.93298 0.90850 0.92835 0.91090 0.92931 0.93200 0.92856 0.91388 0.91100 0.96367 0.95427 0.92254 0.86128 0.83592 0.87685 0.88732 0.91424 0.90528 0.89693 0.93293 0.89666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.51 8.95 71.98 0.64 -2.87 16 2 C -0.09 -2.39 2.92 -10.79 -0.03 -2.42 16 3 C -0.14 -3.08 9.19 71.98 0.66 -2.42 16 4 C -0.11 -3.80 5.01 30.59 0.15 -3.64 16 5 C 0.12 4.60 5.16 86.38 0.45 5.04 16 6 N -0.60 -26.71 2.46 -830.43 -2.04 -28.75 16 7 C 0.25 12.74 4.83 85.64 0.41 13.15 16 8 C -0.54 -29.35 9.39 25.60 0.24 -29.11 16 9 H 0.05 2.68 7.81 -2.91 -0.02 2.66 16 10 C 0.02 1.16 5.46 84.65 0.46 1.62 16 11 N -0.92 -51.41 13.29 21.45 0.28 -51.13 16 12 Si 0.96 42.56 29.54 68.60 2.03 44.58 16 13 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 14 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 15 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 16 C 0.54 23.59 7.49 86.57 0.65 24.24 16 17 O -0.58 -25.69 12.72 -4.06 -0.05 -25.74 16 18 C -0.23 -9.11 9.12 23.43 0.21 -8.89 16 19 C -0.05 -1.63 9.29 24.52 0.23 -1.40 16 20 C -0.11 -3.48 2.93 -11.01 -0.03 -3.52 16 21 C -0.13 -2.90 7.64 31.18 0.24 -2.66 16 22 C -0.13 -2.76 8.09 31.18 0.25 -2.51 16 23 C -0.12 -3.33 7.63 31.12 0.24 -3.09 16 24 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.05 1.24 6.57 -2.38 -0.02 1.23 16 26 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.05 1.84 8.14 -2.39 -0.02 1.83 16 33 H 0.07 2.67 8.07 -2.39 -0.02 2.65 16 34 H 0.07 2.77 5.84 -2.39 -0.01 2.76 16 35 H 0.02 0.96 8.07 -2.39 -0.02 0.94 16 36 H 0.03 1.44 6.21 -2.39 -0.01 1.43 16 37 H 0.27 14.10 8.31 -92.71 -0.77 13.33 16 38 H 0.12 5.18 6.38 -2.91 -0.02 5.16 16 39 H 0.15 3.71 8.06 -2.91 -0.02 3.69 16 40 H 0.11 3.90 5.25 -3.42 -0.02 3.89 16 41 H 0.09 1.80 8.09 -2.39 -0.02 1.78 16 42 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 44 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 46 H 0.08 2.07 8.09 -2.39 -0.02 2.05 16 Total: -1.00 -60.09 366.87 5.91 -54.18 By element: Atomic # 1 Polarization: 24.42 SS G_CDS: 0.91 Total: 25.33 kcal Atomic # 6 Polarization: -23.25 SS G_CDS: 4.77 Total: -18.47 kcal Atomic # 7 Polarization: -78.12 SS G_CDS: -1.75 Total: -79.88 kcal Atomic # 8 Polarization: -25.69 SS G_CDS: -0.05 Total: -25.74 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.58 kcal Total: -60.09 5.91 -54.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492049988.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.560 kcal (2) G-P(sol) polarization free energy of solvation -60.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds