Wall clock time and date at job start Tue Mar 31 2020 01:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53003 * 109.46832 * 2 1 4 4 C 1.52996 * 109.47295 * 239.99672 * 2 1 3 5 5 C 1.53000 * 109.46667 * 119.99910 * 2 1 3 6 6 N 1.46492 * 109.47360 * 60.00086 * 5 2 1 7 7 C 1.46502 * 120.00493 * 269.99623 * 6 5 2 8 8 C 1.50699 * 109.47112 * 270.00323 * 7 6 5 9 9 H 1.07999 * 120.00285 * 359.97438 * 8 7 6 10 10 C 1.37875 * 119.99632 * 179.97438 * 8 7 6 11 11 N 1.31519 * 120.00264 * 359.97438 * 10 8 7 12 12 Si 1.86806 * 119.99887 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47089 * 0.02562 * 12 10 8 14 14 H 1.48504 * 109.47071 * 119.99947 * 12 10 8 15 15 H 1.48497 * 109.47206 * 240.00218 * 12 10 8 16 16 C 1.34784 * 119.99833 * 89.99881 * 6 5 2 17 17 O 1.21617 * 119.99735 * 179.97438 * 16 6 5 18 18 C 1.47094 * 120.00175 * 359.97438 * 16 6 5 19 19 C 1.32994 * 120.00360 * 179.97438 * 18 16 6 20 20 C 1.50694 * 120.00173 * 179.72535 * 19 18 16 21 21 C 1.53786 * 113.61505 * 219.13774 * 20 19 18 22 22 C 1.53961 * 87.02013 * 220.04935 * 21 20 19 23 23 C 1.53781 * 113.61559 * 121.52824 * 20 19 18 24 24 H 1.08998 * 109.47134 * 299.99955 * 1 2 3 25 25 H 1.09000 * 109.46846 * 60.00188 * 1 2 3 26 26 H 1.08995 * 109.46816 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46766 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.46824 * 299.99849 * 3 2 1 29 29 H 1.08998 * 109.47224 * 60.00100 * 3 2 1 30 30 H 1.09003 * 109.47362 * 300.00165 * 4 2 1 31 31 H 1.09000 * 109.47060 * 60.00270 * 4 2 1 32 32 H 1.09000 * 109.47244 * 180.02562 * 4 2 1 33 33 H 1.09006 * 109.47194 * 299.99947 * 5 2 1 34 34 H 1.09004 * 109.47136 * 180.02562 * 5 2 1 35 35 H 1.09003 * 109.46522 * 30.00023 * 7 6 5 36 36 H 1.08996 * 109.47508 * 149.99873 * 7 6 5 37 37 H 0.97007 * 119.99696 * 179.97438 * 11 10 8 38 38 H 1.08005 * 119.99863 * 359.72513 * 18 16 6 39 39 H 1.08000 * 119.99263 * 359.72526 * 19 18 16 40 40 H 1.09004 * 112.85051 * 350.33218 * 20 19 18 41 41 H 1.09005 * 113.60864 * 334.56636 * 21 20 19 42 42 H 1.08991 * 113.61523 * 105.46858 * 21 20 19 43 43 H 1.08996 * 113.53553 * 270.81114 * 22 21 20 44 44 H 1.08994 * 113.74365 * 139.94045 * 22 21 20 45 45 H 1.08994 * 113.62092 * 254.53241 * 23 20 19 46 46 H 1.09006 * 113.61246 * 25.43274 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2493 6 7 1.5517 -2.1024 1.2493 7 6 0.2716 -2.4268 1.8837 8 6 0.5024 -2.7748 3.3317 9 1 1.5026 -2.7565 3.7386 10 6 -0.5633 -3.1165 4.1368 11 7 -1.7814 -3.1382 3.6414 12 14 -0.2772 -3.5485 5.9316 13 1 1.1720 -3.4487 6.2398 14 1 -1.0323 -2.6047 6.7944 15 1 -0.7438 -4.9348 6.1875 16 6 2.2801 -3.0747 0.6657 17 8 1.8750 -4.2214 0.6662 18 6 3.5652 -2.7490 0.0284 19 6 4.2842 -3.7085 -0.5470 20 6 5.5978 -3.3737 -1.2054 21 6 5.8446 -4.1428 -2.5141 22 6 7.3089 -4.2852 -2.0601 23 6 6.7944 -4.1405 -0.6181 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1301 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6768 -1.7490 -1.2492 31 1 1.6768 -0.2075 -2.1392 32 1 3.1301 -0.7217 -1.2489 33 1 1.6766 -0.2074 2.1393 34 1 3.1300 -0.7209 1.2496 35 1 -0.3945 -1.5665 1.8184 36 1 -0.1817 -3.2767 1.3735 37 1 -2.5312 -3.3790 4.2079 38 1 3.9229 -1.7299 0.0241 39 1 3.9267 -4.7276 -0.5424 40 1 5.7667 -2.3003 -1.2913 41 1 5.3107 -5.0915 -2.5702 42 1 5.7213 -3.5329 -3.4089 43 1 7.9461 -3.4612 -2.3810 44 1 7.7414 -5.2627 -2.2734 45 1 7.4367 -3.5289 0.0154 46 1 6.5206 -5.0886 -0.1550 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492094596.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:45:23 Heat of formation + Delta-G solvation = -15.430200 kcal Electronic energy + Delta-G solvation = -22781.830192 eV Core-core repulsion = 19672.064363 eV Total energy + Delta-G solvation = -3109.765829 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.60741 -38.77790 -36.91707 -33.92350 -32.66623 -32.22589 -28.15703 -27.12218 -26.80047 -25.92909 -25.69698 -25.21812 -22.99130 -20.60903 -19.57573 -19.14444 -17.62034 -16.67187 -16.46364 -15.76728 -15.17924 -14.85012 -14.64483 -14.31828 -13.92094 -13.60936 -13.25088 -12.89292 -12.67921 -12.60424 -12.54998 -12.33219 -12.12644 -11.91206 -11.48828 -11.29433 -11.24933 -11.19373 -10.92354 -10.80696 -10.73611 -10.62534 -10.53315 -10.48100 -10.38640 -10.15374 -10.06160 -9.50387 -8.92974 -8.84587 -8.38476 -7.52752 -6.00022 -4.03993 1.83790 3.31919 3.39495 3.43863 4.02300 4.08281 4.48331 4.52500 4.60493 4.63422 4.87283 5.03419 5.08324 5.10196 5.23359 5.33812 5.39182 5.51280 5.58071 5.65774 5.69641 5.73912 5.75603 5.78582 5.83930 5.84929 5.96882 5.99924 6.02744 6.14631 6.21426 6.29692 6.33279 6.37813 6.45449 6.60209 6.68233 6.75383 6.79835 7.21176 7.50950 7.64180 7.97453 8.30008 8.52719 8.96281 9.19836 9.60914 11.07738 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.014568 B = 0.005155 C = 0.004153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.565416 B = 5430.688264 C = 6739.713125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.088 4.088 3 C -0.136 4.136 4 C -0.141 4.141 5 C 0.121 3.879 6 N -0.587 5.587 7 C 0.242 3.758 8 C -0.523 4.523 9 H 0.057 0.943 10 C 0.061 3.939 11 N -0.895 5.895 12 Si 0.896 3.104 13 H -0.274 1.274 14 H -0.284 1.284 15 H -0.283 1.283 16 C 0.535 3.465 17 O -0.549 6.549 18 C -0.198 4.198 19 C -0.085 4.085 20 C -0.087 4.087 21 C -0.132 4.132 22 C -0.143 4.143 23 C -0.131 4.131 24 H 0.056 0.944 25 H 0.044 0.956 26 H 0.068 0.932 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.048 0.952 32 H 0.054 0.946 33 H 0.081 0.919 34 H 0.066 0.934 35 H 0.040 0.960 36 H 0.041 0.959 37 H 0.262 0.738 38 H 0.123 0.877 39 H 0.123 0.877 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.067 0.933 43 H 0.078 0.922 44 H 0.067 0.933 45 H 0.068 0.932 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.169 6.257 -11.425 19.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.089 4.089 3 C -0.194 4.194 4 C -0.198 4.198 5 C -0.003 4.003 6 N -0.317 5.317 7 C 0.123 3.877 8 C -0.562 4.562 9 H 0.075 0.925 10 C -0.141 4.141 11 N -0.535 5.535 12 Si 0.724 3.276 13 H -0.198 1.198 14 H -0.210 1.210 15 H -0.209 1.209 16 C 0.324 3.676 17 O -0.429 6.429 18 C -0.218 4.218 19 C -0.104 4.104 20 C -0.105 4.105 21 C -0.169 4.169 22 C -0.181 4.181 23 C -0.168 4.168 24 H 0.075 0.925 25 H 0.063 0.937 26 H 0.087 0.913 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.099 0.901 34 H 0.084 0.916 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.071 0.929 38 H 0.141 0.859 39 H 0.141 0.859 40 H 0.112 0.888 41 H 0.103 0.897 42 H 0.086 0.914 43 H 0.097 0.903 44 H 0.085 0.915 45 H 0.087 0.913 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 13.722 5.630 -11.341 18.671 hybrid contribution -0.008 -0.086 1.119 1.122 sum 13.714 5.544 -10.222 17.981 Atomic orbital electron populations 1.21949 0.93989 1.03028 1.00859 1.21010 0.96837 0.95020 0.96072 1.21799 1.00470 0.95448 1.01708 1.22035 1.00338 1.00855 0.96614 1.21537 0.98136 0.83304 0.97363 1.48057 1.23212 1.06108 1.54303 1.19394 0.78833 0.97273 0.92197 1.21509 0.93681 1.46199 0.94840 0.92519 1.24921 0.95011 0.95422 0.98753 1.69946 0.98638 1.48818 1.36049 0.86475 0.78214 0.78107 0.84818 1.19848 1.21020 1.20930 1.18401 0.84769 0.85289 0.79186 1.90744 1.71754 1.20039 1.60337 1.23092 0.96472 1.00026 1.02245 1.23499 0.93413 0.99702 0.93817 1.21718 0.92670 0.99827 0.96317 1.22946 0.96380 1.00826 0.96755 1.22876 0.96582 1.01910 0.96714 1.22896 0.96532 1.00936 0.96456 0.92478 0.93681 0.91317 0.92963 0.92817 0.92504 0.92203 0.93260 0.92748 0.90077 0.91606 0.94169 0.94143 0.92869 0.85906 0.85884 0.88831 0.89743 0.91384 0.90311 0.91459 0.91342 0.89710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 7.22 37.16 0.27 -1.96 16 2 C -0.09 -1.24 0.84 -154.50 -0.13 -1.37 16 3 C -0.14 -1.53 8.47 37.16 0.31 -1.21 16 4 C -0.14 -1.91 6.88 37.16 0.26 -1.65 16 5 C 0.12 2.02 4.51 -4.05 -0.02 2.00 16 6 N -0.59 -12.57 1.98 -176.46 -0.35 -12.92 16 7 C 0.24 6.35 4.07 -5.19 -0.02 6.32 16 8 C -0.52 -15.04 9.39 -34.44 -0.32 -15.37 16 9 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 10 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 11 N -0.90 -26.79 13.29 55.43 0.74 -26.05 16 12 Si 0.90 22.18 29.54 -169.99 -5.02 17.16 16 13 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16 14 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 15 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 16 C 0.53 11.55 6.22 -12.66 -0.08 11.47 16 17 O -0.55 -14.35 15.80 5.26 0.08 -14.26 16 18 C -0.20 -3.18 6.69 -37.81 -0.25 -3.43 16 19 C -0.08 -1.22 8.79 -36.13 -0.32 -1.53 16 20 C -0.09 -0.93 4.01 -90.96 -0.36 -1.29 16 21 C -0.13 -1.23 7.64 -25.82 -0.20 -1.43 16 22 C -0.14 -1.18 8.09 -25.82 -0.21 -1.39 16 23 C -0.13 -1.27 7.63 -25.92 -0.20 -1.46 16 24 H 0.06 0.92 8.08 -51.93 -0.42 0.50 16 25 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.07 1.29 5.99 -51.93 -0.31 0.98 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.97 6.01 -51.93 -0.31 0.66 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.64 6.20 -51.93 -0.32 0.32 16 33 H 0.08 1.42 8.07 -51.93 -0.42 1.00 16 34 H 0.07 0.96 6.10 -51.93 -0.32 0.64 16 35 H 0.04 1.05 6.05 -51.93 -0.31 0.73 16 36 H 0.04 1.21 7.42 -51.93 -0.39 0.83 16 37 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.12 1.66 4.54 -52.48 -0.24 1.42 16 39 H 0.12 1.99 7.49 -52.49 -0.39 1.59 16 40 H 0.09 0.91 8.03 -51.93 -0.42 0.49 16 41 H 0.08 0.82 8.09 -51.93 -0.42 0.40 16 42 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 46 H 0.08 0.87 8.09 -51.93 -0.42 0.45 16 LS Contribution 357.40 15.07 5.39 5.39 Total: -1.00 -32.45 357.40 -8.57 -41.02 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -8.04 Total: 0.33 kcal Atomic # 6 Polarization: -9.29 SS G_CDS: -1.37 Total: -10.66 kcal Atomic # 7 Polarization: -39.36 SS G_CDS: 0.39 Total: -38.97 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: 0.08 Total: -14.26 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.45 -8.57 -41.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492094596.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.588 kcal (2) G-P(sol) polarization free energy of solvation -32.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds