Wall clock time and date at job start Tue Mar 31 2020 01:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53003 * 109.46832 * 2 1 4 4 C 1.52996 * 109.47295 * 239.99672 * 2 1 3 5 5 C 1.53000 * 109.46667 * 119.99910 * 2 1 3 6 6 N 1.46492 * 109.47360 * 60.00086 * 5 2 1 7 7 C 1.46502 * 120.00493 * 269.99623 * 6 5 2 8 8 C 1.50699 * 109.47112 * 270.00323 * 7 6 5 9 9 H 1.07999 * 120.00285 * 359.97438 * 8 7 6 10 10 C 1.37875 * 119.99632 * 179.97438 * 8 7 6 11 11 N 1.31519 * 120.00264 * 359.97438 * 10 8 7 12 12 Si 1.86806 * 119.99887 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47089 * 0.02562 * 12 10 8 14 14 H 1.48504 * 109.47071 * 119.99947 * 12 10 8 15 15 H 1.48497 * 109.47206 * 240.00218 * 12 10 8 16 16 C 1.34784 * 119.99833 * 89.99881 * 6 5 2 17 17 O 1.21617 * 119.99735 * 179.97438 * 16 6 5 18 18 C 1.47094 * 120.00175 * 359.97438 * 16 6 5 19 19 C 1.32994 * 120.00360 * 179.97438 * 18 16 6 20 20 C 1.50694 * 120.00173 * 179.72535 * 19 18 16 21 21 C 1.53786 * 113.61505 * 219.13774 * 20 19 18 22 22 C 1.53961 * 87.02013 * 220.04935 * 21 20 19 23 23 C 1.53781 * 113.61559 * 121.52824 * 20 19 18 24 24 H 1.08998 * 109.47134 * 299.99955 * 1 2 3 25 25 H 1.09000 * 109.46846 * 60.00188 * 1 2 3 26 26 H 1.08995 * 109.46816 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46766 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.46824 * 299.99849 * 3 2 1 29 29 H 1.08998 * 109.47224 * 60.00100 * 3 2 1 30 30 H 1.09003 * 109.47362 * 300.00165 * 4 2 1 31 31 H 1.09000 * 109.47060 * 60.00270 * 4 2 1 32 32 H 1.09000 * 109.47244 * 180.02562 * 4 2 1 33 33 H 1.09006 * 109.47194 * 299.99947 * 5 2 1 34 34 H 1.09004 * 109.47136 * 180.02562 * 5 2 1 35 35 H 1.09003 * 109.46522 * 30.00023 * 7 6 5 36 36 H 1.08996 * 109.47508 * 149.99873 * 7 6 5 37 37 H 0.97007 * 119.99696 * 179.97438 * 11 10 8 38 38 H 1.08005 * 119.99863 * 359.72513 * 18 16 6 39 39 H 1.08000 * 119.99263 * 359.72526 * 19 18 16 40 40 H 1.09004 * 112.85051 * 350.33218 * 20 19 18 41 41 H 1.09005 * 113.60864 * 334.56636 * 21 20 19 42 42 H 1.08991 * 113.61523 * 105.46858 * 21 20 19 43 43 H 1.08996 * 113.53553 * 270.81114 * 22 21 20 44 44 H 1.08994 * 113.74365 * 139.94045 * 22 21 20 45 45 H 1.08994 * 113.62092 * 254.53241 * 23 20 19 46 46 H 1.09006 * 113.61246 * 25.43274 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2493 6 7 1.5517 -2.1024 1.2493 7 6 0.2716 -2.4268 1.8837 8 6 0.5024 -2.7748 3.3317 9 1 1.5026 -2.7565 3.7386 10 6 -0.5633 -3.1165 4.1368 11 7 -1.7814 -3.1382 3.6414 12 14 -0.2772 -3.5485 5.9316 13 1 1.1720 -3.4487 6.2398 14 1 -1.0323 -2.6047 6.7944 15 1 -0.7438 -4.9348 6.1875 16 6 2.2801 -3.0747 0.6657 17 8 1.8750 -4.2214 0.6662 18 6 3.5652 -2.7490 0.0284 19 6 4.2842 -3.7085 -0.5470 20 6 5.5978 -3.3737 -1.2054 21 6 5.8446 -4.1428 -2.5141 22 6 7.3089 -4.2852 -2.0601 23 6 6.7944 -4.1405 -0.6181 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1301 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6768 -1.7490 -1.2492 31 1 1.6768 -0.2075 -2.1392 32 1 3.1301 -0.7217 -1.2489 33 1 1.6766 -0.2074 2.1393 34 1 3.1300 -0.7209 1.2496 35 1 -0.3945 -1.5665 1.8184 36 1 -0.1817 -3.2767 1.3735 37 1 -2.5312 -3.3790 4.2079 38 1 3.9229 -1.7299 0.0241 39 1 3.9267 -4.7276 -0.5424 40 1 5.7667 -2.3003 -1.2913 41 1 5.3107 -5.0915 -2.5702 42 1 5.7213 -3.5329 -3.4089 43 1 7.9461 -3.4612 -2.3810 44 1 7.7414 -5.2627 -2.2734 45 1 7.4367 -3.5289 0.0154 46 1 6.5206 -5.0886 -0.1550 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492094596.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:45:22 Heat of formation + Delta-G solvation = -33.481166 kcal Electronic energy + Delta-G solvation = -22782.612941 eV Core-core repulsion = 19672.064363 eV Total energy + Delta-G solvation = -3110.548578 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.13175 -39.65425 -38.37642 -35.75437 -34.31758 -33.87443 -29.98607 -28.24716 -28.08593 -27.13265 -26.66542 -26.42655 -24.77856 -21.99319 -20.56225 -20.31335 -19.03847 -18.65121 -18.06316 -17.22305 -16.54889 -16.34069 -15.98571 -15.63465 -15.19217 -14.91265 -14.73887 -14.38798 -14.18784 -13.87914 -13.53841 -13.43368 -13.29613 -13.16815 -12.97878 -12.87267 -12.64750 -12.54425 -12.50853 -12.34760 -12.16748 -12.00214 -11.68214 -11.61196 -11.52956 -11.39452 -11.37020 -11.24157 -10.63834 -10.55394 -10.15347 -9.32170 -8.22414 -6.37528 0.51403 1.33696 1.36261 1.48292 2.29805 2.48946 2.51365 3.06050 3.63676 3.76960 3.84526 3.87674 3.91957 4.04175 4.07195 4.10457 4.26492 4.45408 4.54288 4.61283 4.77606 4.81908 4.87161 4.89200 4.90807 4.94196 4.98180 5.02921 5.10090 5.12559 5.13453 5.14462 5.20683 5.22404 5.25197 5.38031 5.44546 5.49744 5.54732 5.58651 5.61624 5.70412 5.90892 6.08570 6.70839 6.84566 7.27997 7.51938 8.84097 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.014568 B = 0.005155 C = 0.004153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.565416 B = 5430.688264 C = 6739.713125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.082 4.082 3 C -0.129 4.129 4 C -0.136 4.136 5 C 0.114 3.886 6 N -0.589 5.589 7 C 0.262 3.738 8 C -0.543 4.543 9 H 0.050 0.950 10 C 0.008 3.992 11 N -0.928 5.928 12 Si 0.967 3.033 13 H -0.268 1.268 14 H -0.267 1.267 15 H -0.282 1.282 16 C 0.524 3.476 17 O -0.613 6.613 18 C -0.209 4.209 19 C -0.060 4.060 20 C -0.087 4.087 21 C -0.134 4.134 22 C -0.131 4.131 23 C -0.134 4.134 24 H 0.046 0.954 25 H 0.067 0.933 26 H 0.025 0.975 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.055 0.945 30 H 0.023 0.977 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.098 0.902 35 H 0.035 0.965 36 H -0.013 1.013 37 H 0.267 0.733 38 H 0.159 0.841 39 H 0.096 0.904 40 H 0.118 0.882 41 H 0.072 0.928 42 H 0.081 0.919 43 H 0.098 0.902 44 H 0.072 0.928 45 H 0.080 0.920 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.340 8.437 -11.972 22.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.083 4.083 3 C -0.186 4.186 4 C -0.193 4.193 5 C -0.008 4.008 6 N -0.317 5.317 7 C 0.141 3.859 8 C -0.582 4.582 9 H 0.068 0.932 10 C -0.191 4.191 11 N -0.568 5.568 12 Si 0.791 3.209 13 H -0.192 1.192 14 H -0.192 1.192 15 H -0.208 1.208 16 C 0.316 3.684 17 O -0.498 6.498 18 C -0.229 4.229 19 C -0.080 4.080 20 C -0.106 4.106 21 C -0.171 4.171 22 C -0.168 4.168 23 C -0.172 4.172 24 H 0.065 0.935 25 H 0.086 0.914 26 H 0.044 0.956 27 H 0.094 0.906 28 H 0.087 0.913 29 H 0.074 0.926 30 H 0.042 0.958 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.116 0.884 35 H 0.053 0.947 36 H 0.005 0.995 37 H 0.076 0.924 38 H 0.176 0.824 39 H 0.114 0.886 40 H 0.136 0.864 41 H 0.091 0.909 42 H 0.100 0.900 43 H 0.116 0.884 44 H 0.091 0.909 45 H 0.099 0.901 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 16.917 7.863 -11.900 22.127 hybrid contribution -1.023 -0.826 1.223 1.795 sum 15.894 7.037 -10.677 20.399 Atomic orbital electron populations 1.21911 0.95921 1.00357 1.01458 1.20986 0.95213 0.97134 0.95014 1.21744 1.01920 0.92492 1.02491 1.21992 1.01839 0.98675 0.96802 1.21880 0.99919 0.80553 0.98486 1.48012 1.21607 1.08448 1.53674 1.18806 0.81142 0.94888 0.91047 1.21778 0.93502 1.46834 0.96094 0.93221 1.25849 0.94639 0.94978 1.03635 1.70068 0.99545 1.49247 1.37913 0.85379 0.78472 0.77973 0.79044 1.19238 1.19188 1.20759 1.19360 0.86274 0.84264 0.78460 1.90697 1.73591 1.22616 1.62894 1.22873 0.94070 1.02110 1.03875 1.23757 0.94524 0.98060 0.91645 1.21901 0.90271 1.01574 0.96811 1.22968 0.97281 1.00330 0.96542 1.22853 0.95920 1.03081 0.94974 1.22923 0.96180 1.00346 0.97739 0.93469 0.91428 0.95579 0.90587 0.91262 0.92595 0.95832 0.91484 0.90206 0.91244 0.88432 0.94688 0.99464 0.92447 0.82368 0.88622 0.86385 0.90912 0.89990 0.88393 0.90884 0.90123 0.91079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.48 7.22 71.99 0.52 -3.96 16 2 C -0.08 -2.20 0.84 -52.18 -0.04 -2.25 16 3 C -0.13 -2.41 8.47 71.98 0.61 -1.80 16 4 C -0.14 -3.39 6.88 71.98 0.50 -2.89 16 5 C 0.11 3.75 4.51 86.38 0.39 4.14 16 6 N -0.59 -26.42 1.98 -830.43 -1.65 -28.07 16 7 C 0.26 14.78 4.07 85.63 0.35 15.13 16 8 C -0.54 -32.68 9.39 25.60 0.24 -32.44 16 9 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 10 C 0.01 0.46 5.46 84.65 0.46 0.92 16 11 N -0.93 -57.68 13.29 21.45 0.28 -57.39 16 12 Si 0.97 46.33 29.54 68.60 2.03 48.36 16 13 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 14 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 15 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 16 C 0.52 23.73 6.22 86.57 0.54 24.27 16 17 O -0.61 -34.60 15.80 -4.09 -0.06 -34.66 16 18 C -0.21 -6.56 6.69 23.43 0.16 -6.41 16 19 C -0.06 -1.68 8.79 24.52 0.22 -1.47 16 20 C -0.09 -1.61 4.01 -11.01 -0.04 -1.65 16 21 C -0.13 -2.15 7.64 31.18 0.24 -1.91 16 22 C -0.13 -1.70 8.09 31.18 0.25 -1.45 16 23 C -0.13 -2.24 7.63 31.12 0.24 -2.01 16 24 H 0.05 1.57 8.08 -2.39 -0.02 1.55 16 25 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.03 1.04 5.99 -2.39 -0.01 1.02 16 27 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 28 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.02 0.75 6.01 -2.39 -0.01 0.74 16 31 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.08 1.56 6.20 -2.39 -0.01 1.55 16 33 H 0.07 2.43 8.07 -2.38 -0.02 2.41 16 34 H 0.10 2.57 6.10 -2.38 -0.01 2.55 16 35 H 0.04 1.98 6.05 -2.39 -0.01 1.96 16 36 H -0.01 -0.84 7.42 -2.39 -0.02 -0.86 16 37 H 0.27 15.46 8.31 -92.70 -0.77 14.69 16 38 H 0.16 3.73 4.54 -2.91 -0.01 3.72 16 39 H 0.10 3.24 7.49 -2.91 -0.02 3.22 16 40 H 0.12 1.69 8.03 -2.38 -0.02 1.67 16 41 H 0.07 1.34 8.09 -2.38 -0.02 1.32 16 42 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 46 H 0.07 1.38 8.09 -2.38 -0.02 1.36 16 Total: -1.00 -77.05 357.40 6.15 -70.90 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: 0.93 Total: 14.63 kcal Atomic # 6 Polarization: -18.39 SS G_CDS: 4.62 Total: -13.77 kcal Atomic # 7 Polarization: -84.10 SS G_CDS: -1.36 Total: -85.46 kcal Atomic # 8 Polarization: -34.60 SS G_CDS: -0.06 Total: -34.66 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Total: -77.05 6.15 -70.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492094596.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.422 kcal (2) G-P(sol) polarization free energy of solvation -77.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds