Wall clock time and date at job start Tue Mar 31 2020 01:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53001 * 109.47125 * 2 1 4 4 C 1.53005 * 109.47545 * 240.00573 * 2 1 3 5 5 C 1.53001 * 109.47499 * 120.00174 * 2 1 3 6 6 N 1.46501 * 109.46669 * 59.99869 * 5 2 1 7 7 C 1.46504 * 119.99599 * 90.00244 * 6 5 2 8 8 C 1.50703 * 109.46967 * 90.00139 * 7 6 5 9 9 H 1.07999 * 120.00221 * 359.97438 * 8 7 6 10 10 C 1.37873 * 119.99986 * 180.02562 * 8 7 6 11 11 N 1.31513 * 120.00107 * 359.97438 * 10 8 7 12 12 Si 1.86809 * 120.00095 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.46859 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47006 * 119.99598 * 12 10 8 15 15 H 1.48499 * 109.47062 * 239.99972 * 12 10 8 16 16 C 1.34775 * 120.00494 * 270.00073 * 6 5 2 17 17 O 1.21610 * 120.00309 * 180.02562 * 16 6 5 18 18 C 1.47107 * 119.99578 * 0.02562 * 16 6 5 19 19 C 1.32992 * 119.99712 * 168.68252 * 18 16 6 20 20 C 1.50701 * 120.00105 * 6.04812 * 19 18 16 21 21 C 1.53784 * 113.61448 * 206.25789 * 20 19 18 22 22 C 1.53951 * 87.02032 * 220.04589 * 21 20 19 23 23 C 1.53779 * 113.61646 * 108.64877 * 20 19 18 24 24 H 1.08997 * 109.47551 * 299.99942 * 1 2 3 25 25 H 1.09003 * 109.47302 * 59.99923 * 1 2 3 26 26 H 1.09004 * 109.46889 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47671 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.47689 * 300.00612 * 3 2 1 29 29 H 1.09004 * 109.46664 * 60.00304 * 3 2 1 30 30 H 1.09005 * 109.46619 * 299.99848 * 4 2 1 31 31 H 1.09003 * 109.47225 * 59.99457 * 4 2 1 32 32 H 1.08999 * 109.47316 * 180.02562 * 4 2 1 33 33 H 1.08997 * 109.46624 * 300.00452 * 5 2 1 34 34 H 1.09001 * 109.47241 * 179.97438 * 5 2 1 35 35 H 1.09003 * 109.46917 * 209.99281 * 7 6 5 36 36 H 1.08993 * 109.47205 * 330.00065 * 7 6 5 37 37 H 0.97003 * 120.00234 * 180.02562 * 11 10 8 38 38 H 1.07997 * 119.99939 * 348.68630 * 18 16 6 39 39 H 1.08002 * 119.99919 * 186.04274 * 19 18 16 40 40 H 1.09001 * 112.84908 * 337.44424 * 20 19 18 41 41 H 1.09003 * 113.61053 * 334.56087 * 21 20 19 42 42 H 1.09001 * 113.61682 * 105.46543 * 21 20 19 43 43 H 1.09004 * 113.53702 * 270.81215 * 22 21 20 44 44 H 1.09001 * 113.74398 * 139.93819 * 22 21 20 45 45 H 1.09005 * 113.60839 * 254.52526 * 23 20 19 46 46 H 1.09000 * 113.61543 * 25.42760 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 2.0400 -0.7213 1.2492 6 7 1.5516 -2.1025 1.2491 7 6 2.3435 -3.1593 0.6146 8 6 3.2847 -3.7585 1.6276 9 1 3.2926 -3.3889 2.6423 10 6 4.1365 -4.7780 1.2586 11 7 4.1272 -5.2278 0.0228 12 14 5.3037 -5.5204 2.5140 13 1 5.1198 -4.8425 3.8224 14 1 5.0152 -6.9695 2.6619 15 1 6.7045 -5.3388 2.0556 16 6 0.3740 -2.4010 1.8327 17 8 -0.0311 -3.5476 1.8330 18 6 -0.4212 -1.3397 2.4693 19 6 -1.6742 -1.5816 2.8438 20 6 -2.2351 -2.9767 2.7420 21 6 -3.7641 -3.0157 2.5815 22 6 -3.7535 -4.2202 3.5401 23 6 -2.4369 -3.6605 4.1045 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1299 1.4426 0.0005 28 1 1.6766 1.9565 -0.8899 29 1 1.6766 1.9563 0.8901 30 1 1.6767 -1.7488 -1.2493 31 1 1.6767 -0.2073 -2.1393 32 1 3.1300 -0.7215 -1.2490 33 1 1.6766 -0.2075 2.1391 34 1 3.1300 -0.7216 1.2489 35 1 1.6773 -3.9340 0.2348 36 1 2.9178 -2.7375 -0.2101 37 1 4.7262 -5.9453 -0.2367 38 1 0.0124 -0.3642 2.6325 39 1 -2.2897 -0.7783 3.2210 40 1 -1.7043 -3.5945 2.0177 41 1 -4.2682 -2.1388 2.9878 42 1 -4.0909 -3.2631 1.5715 43 1 -3.6389 -5.1786 3.0337 44 1 -4.5731 -4.2165 4.2587 45 1 -1.6940 -4.4278 4.3222 46 1 -2.5775 -2.9602 4.9279 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492094601.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:45:26 Heat of formation + Delta-G solvation = -17.893843 kcal Electronic energy + Delta-G solvation = -23203.486753 eV Core-core repulsion = 20093.614092 eV Total energy + Delta-G solvation = -3109.872661 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.25347 -39.55394 -38.22254 -35.73019 -34.29323 -33.74841 -29.92525 -28.20172 -28.08107 -27.08158 -26.55182 -26.33215 -24.85505 -22.18313 -20.47618 -20.43294 -18.97871 -18.61506 -17.98346 -17.04768 -16.48077 -16.39075 -16.04104 -15.47416 -15.10782 -14.84657 -14.53867 -14.39166 -14.24853 -13.77920 -13.51911 -13.26916 -13.23669 -13.16551 -13.12210 -12.95735 -12.76739 -12.56699 -12.50633 -12.43669 -12.13801 -11.98698 -11.65855 -11.58763 -11.53022 -11.41756 -11.34479 -10.93077 -10.63056 -10.10362 -9.94322 -9.20758 -8.21206 -6.36058 0.63538 1.33484 1.35822 1.47722 2.32340 2.48456 2.60375 3.07083 3.76778 3.84956 3.86007 3.92768 3.94622 3.99349 4.15303 4.20470 4.36642 4.55382 4.61365 4.65323 4.79925 4.83169 4.84816 4.88745 4.95687 4.98690 5.01646 5.07475 5.11674 5.12580 5.14784 5.18023 5.23800 5.26334 5.28459 5.38871 5.46082 5.49123 5.56497 5.62570 5.68551 5.91395 6.00105 6.11428 6.73045 6.92808 7.30580 7.63380 8.84842 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.011546 B = 0.006765 C = 0.004681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2424.583058 B = 4137.833277 C = 5980.187313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.082 4.082 3 C -0.129 4.129 4 C -0.139 4.139 5 C 0.116 3.884 6 N -0.592 5.592 7 C 0.264 3.736 8 C -0.539 4.539 9 H 0.049 0.951 10 C 0.008 3.992 11 N -0.929 5.929 12 Si 0.964 3.036 13 H -0.268 1.268 14 H -0.282 1.282 15 H -0.268 1.268 16 C 0.524 3.476 17 O -0.587 6.587 18 C -0.219 4.219 19 C -0.051 4.051 20 C -0.142 4.142 21 C -0.125 4.125 22 C -0.136 4.136 23 C -0.123 4.123 24 H 0.079 0.921 25 H 0.063 0.937 26 H 0.024 0.976 27 H 0.054 0.946 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.026 0.974 31 H 0.065 0.935 32 H 0.045 0.955 33 H 0.097 0.903 34 H 0.066 0.934 35 H -0.011 1.011 36 H 0.032 0.968 37 H 0.266 0.734 38 H 0.155 0.845 39 H 0.162 0.838 40 H 0.110 0.890 41 H 0.103 0.897 42 H 0.058 0.942 43 H 0.064 0.936 44 H 0.087 0.913 45 H 0.036 0.964 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.663 15.075 4.390 19.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.083 4.083 3 C -0.187 4.187 4 C -0.196 4.196 5 C -0.007 4.007 6 N -0.321 5.321 7 C 0.143 3.857 8 C -0.578 4.578 9 H 0.067 0.933 10 C -0.191 4.191 11 N -0.569 5.569 12 Si 0.789 3.211 13 H -0.193 1.193 14 H -0.208 1.208 15 H -0.193 1.193 16 C 0.317 3.683 17 O -0.472 6.472 18 C -0.239 4.239 19 C -0.070 4.070 20 C -0.160 4.160 21 C -0.162 4.162 22 C -0.173 4.173 23 C -0.160 4.160 24 H 0.098 0.902 25 H 0.082 0.918 26 H 0.043 0.957 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.094 0.906 30 H 0.045 0.955 31 H 0.084 0.916 32 H 0.064 0.936 33 H 0.115 0.885 34 H 0.084 0.916 35 H 0.008 0.992 36 H 0.050 0.950 37 H 0.075 0.925 38 H 0.172 0.828 39 H 0.179 0.821 40 H 0.127 0.873 41 H 0.122 0.878 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.106 0.894 45 H 0.055 0.945 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -11.730 14.374 4.250 19.033 hybrid contribution 1.123 -1.250 0.063 1.681 sum -10.607 13.124 4.313 17.417 Atomic orbital electron populations 1.21942 0.93870 1.00411 1.02849 1.20975 0.96551 0.96535 0.94253 1.21744 1.01029 0.92763 1.03148 1.21909 1.00317 0.99395 0.97984 1.21844 0.99430 0.80608 0.98839 1.48045 1.19658 1.09410 1.54975 1.18766 0.88956 0.85384 0.92642 1.21773 1.20086 1.19037 0.96905 0.93293 1.25822 0.99100 0.96777 0.97397 1.70060 1.39475 1.28514 1.18817 0.85419 0.78672 0.77984 0.79044 1.19268 1.20806 1.19319 1.19379 0.81316 0.88991 0.78605 1.90494 1.69571 1.24438 1.62680 1.22823 0.96670 0.99335 1.05052 1.23906 0.94491 0.97478 0.91151 1.22691 0.96947 0.95759 1.00557 1.22984 0.94592 0.99145 0.99483 1.22775 0.97476 0.97780 0.99266 1.22752 0.97482 0.99426 0.96347 0.90214 0.91787 0.95666 0.92706 0.91379 0.90648 0.95466 0.91566 0.93628 0.88464 0.91576 0.99243 0.95048 0.92514 0.82760 0.82053 0.87305 0.87831 0.92311 0.91770 0.89407 0.94467 0.88546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.29 6.89 71.98 0.50 -2.79 16 2 C -0.08 -2.19 0.84 -52.18 -0.04 -2.23 16 3 C -0.13 -2.45 8.47 71.98 0.61 -1.84 16 4 C -0.14 -4.46 7.22 71.98 0.52 -3.94 16 5 C 0.12 3.75 4.53 86.38 0.39 4.14 16 6 N -0.59 -25.86 1.98 -830.42 -1.65 -27.50 16 7 C 0.26 14.60 4.06 85.63 0.35 14.95 16 8 C -0.54 -32.05 9.39 25.60 0.24 -31.81 16 9 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 10 C 0.01 0.45 5.46 84.65 0.46 0.92 16 11 N -0.93 -57.49 13.29 21.45 0.28 -57.21 16 12 Si 0.96 46.21 29.54 68.60 2.03 48.23 16 13 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 14 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 15 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 16 C 0.52 22.53 6.16 86.57 0.53 23.06 16 17 O -0.59 -30.72 12.50 -4.06 -0.05 -30.77 16 18 C -0.22 -6.49 6.66 23.43 0.16 -6.33 16 19 C -0.05 -1.30 9.29 24.52 0.23 -1.07 16 20 C -0.14 -4.34 3.22 -11.01 -0.04 -4.37 16 21 C -0.12 -2.85 7.64 31.18 0.24 -2.61 16 22 C -0.14 -3.21 8.09 31.18 0.25 -2.96 16 23 C -0.12 -3.42 7.63 31.12 0.24 -3.18 16 24 H 0.08 1.55 6.47 -2.39 -0.02 1.53 16 25 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.02 0.79 6.01 -2.38 -0.01 0.77 16 27 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.03 1.07 5.99 -2.38 -0.01 1.06 16 31 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.04 1.52 8.08 -2.39 -0.02 1.50 16 33 H 0.10 2.52 5.99 -2.39 -0.01 2.51 16 34 H 0.07 2.32 8.07 -2.39 -0.02 2.30 16 35 H -0.01 -0.68 7.42 -2.39 -0.02 -0.70 16 36 H 0.03 1.76 6.05 -2.39 -0.01 1.75 16 37 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 38 H 0.16 3.46 5.25 -2.91 -0.02 3.44 16 39 H 0.16 2.59 8.06 -2.91 -0.02 2.57 16 40 H 0.11 4.56 4.69 -42.41 -0.20 4.36 16 41 H 0.10 1.75 8.09 -2.39 -0.02 1.73 16 42 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.06 1.68 8.14 -2.38 -0.02 1.67 16 44 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.04 1.25 8.14 -2.38 -0.02 1.23 16 46 H 0.10 2.18 8.09 -2.39 -0.02 2.16 16 Total: -1.00 -74.50 351.85 6.00 -68.51 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: 0.75 Total: 18.82 kcal Atomic # 6 Polarization: -24.71 SS G_CDS: 4.63 Total: -20.08 kcal Atomic # 7 Polarization: -83.35 SS G_CDS: -1.36 Total: -84.71 kcal Atomic # 8 Polarization: -30.72 SS G_CDS: -0.05 Total: -30.77 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.23 kcal Total: -74.50 6.00 -68.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492094601.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.612 kcal (2) G-P(sol) polarization free energy of solvation -74.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds