Wall clock time and date at job start Tue Mar 31 2020 01:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52992 * 109.46937 * 2 1 4 4 C 1.53003 * 109.46929 * 240.00179 * 2 1 3 5 5 C 1.50698 * 109.47222 * 60.00219 * 4 2 1 6 6 H 1.08002 * 119.99706 * 359.97438 * 5 4 2 7 7 C 1.37873 * 119.99948 * 180.02562 * 5 4 2 8 8 N 1.31511 * 119.99952 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99962 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47194 * 59.99648 * 9 7 5 11 11 H 1.48508 * 109.46868 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47048 * 299.99106 * 9 7 5 13 13 C 1.53001 * 109.46940 * 120.00026 * 2 1 3 14 14 N 1.46498 * 109.47083 * 300.00225 * 13 2 1 15 15 C 1.34783 * 119.99968 * 180.02562 * 14 13 2 16 16 O 1.21612 * 119.99652 * 359.97438 * 15 14 13 17 17 C 1.47098 * 120.00090 * 180.02562 * 15 14 13 18 18 C 1.32993 * 119.99743 * 180.02562 * 17 15 14 19 19 C 1.50704 * 119.99690 * 179.97438 * 18 17 15 20 20 C 1.54892 * 110.59841 * 123.31679 * 19 18 17 21 21 C 1.54888 * 102.74611 * 156.67350 * 20 19 18 22 22 C 1.54265 * 104.19721 * 322.05788 * 21 20 19 23 23 C 1.53873 * 106.59997 * 23.61451 * 22 21 20 24 24 H 1.09000 * 109.47189 * 299.99760 * 1 2 3 25 25 H 1.09000 * 109.46948 * 60.00382 * 1 2 3 26 26 H 1.09001 * 109.46883 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47608 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.47575 * 300.00330 * 3 2 1 29 29 H 1.09004 * 109.47224 * 59.99655 * 3 2 1 30 30 H 1.09005 * 109.46457 * 179.97438 * 4 2 1 31 31 H 1.08996 * 109.47042 * 299.99616 * 4 2 1 32 32 H 0.97006 * 120.00158 * 180.02562 * 8 7 5 33 33 H 1.09000 * 109.47082 * 180.02562 * 13 2 1 34 34 H 1.09004 * 109.47117 * 60.00097 * 13 2 1 35 35 H 0.96994 * 120.00113 * 359.97438 * 14 13 2 36 36 H 1.08001 * 119.99882 * 0.02562 * 17 15 14 37 37 H 1.08001 * 120.00374 * 359.97438 * 18 17 15 38 38 H 1.09002 * 110.43639 * 0.69971 * 19 18 17 39 39 H 1.08992 * 110.75663 * 274.99212 * 20 19 18 40 40 H 1.09000 * 110.75339 * 38.36236 * 20 19 18 41 41 H 1.09007 * 110.48520 * 203.37936 * 21 20 19 42 42 H 1.08996 * 110.48377 * 80.74349 * 21 20 19 43 43 H 1.08993 * 110.03585 * 264.31946 * 22 21 20 44 44 H 1.09006 * 110.07186 * 142.91875 * 22 21 20 45 45 H 1.09002 * 110.03017 * 240.71676 * 23 22 21 46 46 H 1.08992 * 110.03600 * 119.28231 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5378 -0.0108 -2.4797 6 1 0.9165 0.8671 -2.3806 7 6 1.8704 -0.4821 -3.7320 8 7 2.6264 -1.5514 -3.8526 9 14 1.2483 0.3990 -5.2572 10 1 1.7444 1.7987 -5.2572 11 1 1.7433 -0.3012 -6.4697 12 1 -0.2366 0.4000 -5.2572 13 6 2.0400 -0.7213 1.2493 14 7 1.5516 -0.0307 2.4454 15 6 1.8776 -0.4909 3.6696 16 8 2.5768 -1.4797 3.7811 17 6 1.3868 0.2022 4.8706 18 6 1.7089 -0.2517 6.0785 19 6 1.2065 0.4587 7.3090 20 6 0.4121 -0.5152 8.2143 21 6 0.5143 0.1532 9.6078 22 6 1.9482 0.7206 9.6510 23 6 2.3883 0.9149 8.1894 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 3.1301 -0.7208 -1.2495 31 1 1.6768 -1.7489 -1.2493 32 1 2.8608 -1.8828 -4.7337 33 1 3.1300 -0.7209 1.2495 34 1 1.6767 -1.7490 1.2492 35 1 0.9943 0.7581 2.3564 36 1 0.7648 1.0795 4.7715 37 1 2.3305 -1.1293 6.1776 38 1 0.5872 1.3113 7.0301 39 1 -0.6272 -0.5808 7.8926 40 1 0.8777 -1.5007 8.2235 41 1 0.3724 -0.5856 10.3966 42 1 -0.2168 0.9564 9.7001 43 1 2.6134 0.0166 10.1509 44 1 1.9565 1.6771 10.1737 45 1 3.2671 0.3050 7.9799 46 1 2.6093 1.9657 8.0025 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493492834.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:09 Heat of formation + Delta-G solvation = -63.756855 kcal Electronic energy + Delta-G solvation = -21330.271748 eV Core-core repulsion = 18218.410317 eV Total energy + Delta-G solvation = -3111.861430 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.61875 -38.57669 -37.08005 -33.54630 -33.44716 -32.04455 -29.01960 -28.68430 -27.09448 -26.50273 -26.15840 -23.36867 -22.00048 -20.80684 -20.14435 -19.68300 -18.24044 -16.98485 -16.38048 -16.14434 -15.33388 -15.27387 -14.94674 -14.51064 -13.81820 -13.73636 -13.71267 -13.54091 -13.06748 -12.73771 -12.20442 -12.13555 -12.05290 -11.96535 -11.61083 -11.45834 -11.41868 -11.14755 -11.00078 -10.99752 -10.86632 -10.77230 -10.62343 -10.39303 -10.26105 -9.86534 -9.78411 -9.44835 -9.15524 -8.92572 -8.65146 -8.35122 -5.99138 -4.00555 1.36811 3.32371 3.37736 3.38694 3.48178 3.52833 4.25148 4.33857 4.37964 4.45832 4.84957 4.91390 5.10547 5.19135 5.21435 5.25710 5.33055 5.34086 5.36124 5.52180 5.53873 5.59180 5.64191 5.73041 5.76290 5.84927 5.96899 5.99093 6.18395 6.19955 6.25855 6.35452 6.38227 6.40881 6.59544 6.63709 6.79884 7.07111 7.08253 7.14003 7.64616 7.77345 7.82088 7.99444 8.40882 8.49781 9.03973 9.62376 11.12264 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.050962 B = 0.002480 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.292776 B =11286.752908 C =11416.942025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.072 4.072 3 C -0.127 4.127 4 C 0.036 3.964 5 C -0.511 4.511 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.128 3.872 14 N -0.716 5.716 15 C 0.537 3.463 16 O -0.553 6.553 17 C -0.211 4.211 18 C -0.063 4.063 19 C -0.072 4.072 20 C -0.117 4.117 21 C -0.125 4.125 22 C -0.125 4.125 23 C -0.117 4.117 24 H 0.029 0.971 25 H 0.067 0.933 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.067 0.933 29 H 0.029 0.971 30 H 0.018 0.982 31 H 0.018 0.982 32 H 0.260 0.740 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.399 0.601 36 H 0.123 0.877 37 H 0.126 0.874 38 H 0.082 0.918 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.069 0.931 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.569 6.390 24.198 25.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.073 4.073 3 C -0.184 4.184 4 C -0.002 4.002 5 C -0.550 4.550 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.005 3.995 14 N -0.367 5.367 15 C 0.325 3.675 16 O -0.433 6.433 17 C -0.232 4.232 18 C -0.083 4.083 19 C -0.090 4.090 20 C -0.154 4.154 21 C -0.163 4.163 22 C -0.163 4.163 23 C -0.155 4.155 24 H 0.048 0.952 25 H 0.086 0.914 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.086 0.914 29 H 0.048 0.952 30 H 0.037 0.963 31 H 0.037 0.963 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.234 0.766 36 H 0.141 0.859 37 H 0.144 0.856 38 H 0.101 0.899 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.088 0.912 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.980 5.571 24.100 25.054 hybrid contribution -0.550 0.830 -1.111 1.491 sum -4.530 6.401 22.989 24.290 Atomic orbital electron populations 1.21764 0.95290 1.01169 1.00218 1.20903 0.95462 0.95847 0.95079 1.21761 1.00548 0.95909 1.00219 1.19091 0.96362 0.95229 0.89479 1.21143 1.31227 1.12069 0.90528 0.92320 1.25019 0.95342 0.95096 0.99091 1.69956 1.36886 1.23005 1.23539 0.86702 0.79123 0.79754 0.82652 1.20338 1.21409 1.20335 1.21627 0.98897 0.96029 0.82975 1.46122 1.52884 1.31781 1.05892 1.18603 0.80583 0.84331 0.83984 1.90772 1.38740 1.26676 1.87142 1.22706 1.05015 1.02460 0.92976 1.23670 0.94277 0.97466 0.92881 1.21272 0.96932 0.97895 0.92937 1.22543 1.00086 0.98658 0.94117 1.22372 0.96862 0.99919 0.97144 1.22152 0.96648 1.00962 0.96548 1.22178 0.97844 1.01520 0.93967 0.95228 0.91439 0.93370 0.93373 0.91433 0.95239 0.96342 0.96338 0.92985 0.91839 0.91830 0.76623 0.85921 0.85592 0.89917 0.91217 0.90930 0.91560 0.91582 0.91749 0.91841 0.91239 0.91502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.25 8.05 37.16 0.30 -1.95 16 2 C -0.07 -1.39 0.54 -154.51 -0.08 -1.47 16 3 C -0.13 -2.25 8.05 37.15 0.30 -1.95 16 4 C 0.04 0.89 4.04 -27.88 -0.11 0.78 16 5 C -0.51 -13.63 7.65 -34.44 -0.26 -13.90 16 6 H 0.06 1.50 5.68 -52.49 -0.30 1.20 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 8 N -0.89 -26.55 13.29 55.43 0.74 -25.81 16 9 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 C 0.13 2.32 4.56 -4.04 -0.02 2.30 16 14 N -0.72 -10.79 4.95 -61.49 -0.30 -11.10 16 15 C 0.54 8.39 7.76 -12.66 -0.10 8.29 16 16 O -0.55 -10.84 16.22 5.27 0.09 -10.76 16 17 C -0.21 -2.41 9.64 -37.81 -0.36 -2.78 16 18 C -0.06 -0.66 8.27 -36.12 -0.30 -0.95 16 19 C -0.07 -0.56 3.18 -90.11 -0.29 -0.85 16 20 C -0.12 -0.83 6.32 -24.74 -0.16 -0.98 16 21 C -0.13 -0.76 6.83 -25.07 -0.17 -0.93 16 22 C -0.13 -0.77 6.80 -25.61 -0.17 -0.95 16 23 C -0.12 -0.84 6.36 -25.61 -0.16 -1.01 16 24 H 0.03 0.42 6.86 -51.93 -0.36 0.07 16 25 H 0.07 1.28 6.62 -51.93 -0.34 0.93 16 26 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.07 1.28 6.62 -51.93 -0.34 0.94 16 29 H 0.03 0.42 6.86 -51.93 -0.36 0.07 16 30 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 33 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 34 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 35 H 0.40 5.04 6.15 -40.82 -0.25 4.79 16 36 H 0.12 1.08 7.89 -52.49 -0.41 0.66 16 37 H 0.13 1.48 7.49 -52.49 -0.39 1.09 16 38 H 0.08 0.59 7.87 -51.93 -0.41 0.18 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.54 8.05 -51.93 -0.42 0.12 16 41 H 0.07 0.36 8.14 -51.92 -0.42 -0.06 16 42 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.07 0.54 7.83 -51.93 -0.41 0.13 16 46 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 362.77 15.07 5.47 5.47 Total: -1.00 -30.93 362.77 -8.92 -39.85 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -8.20 Total: 0.99 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: -1.69 Total: -14.88 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: 0.43 Total: -36.91 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.09 Total: -10.76 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.93 -8.92 -39.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493492834.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.903 kcal (2) G-P(sol) polarization free energy of solvation -30.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds