Wall clock time and date at job start Tue Mar 31 2020 01:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47382 * 2 1 4 4 C 1.52999 * 109.47267 * 239.99991 * 2 1 3 5 5 C 1.50703 * 109.46978 * 59.99670 * 4 2 1 6 6 H 1.08002 * 119.99802 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00259 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99429 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00163 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47124 * 90.00478 * 9 7 5 11 11 H 1.48506 * 109.46954 * 210.00286 * 9 7 5 12 12 H 1.48500 * 109.47143 * 330.00199 * 9 7 5 13 13 C 1.52999 * 109.47388 * 119.99905 * 2 1 3 14 14 N 1.46496 * 109.47118 * 300.00017 * 13 2 1 15 15 C 1.34776 * 120.00055 * 179.97438 * 14 13 2 16 16 O 1.21613 * 119.99807 * 359.97438 * 15 14 13 17 17 C 1.47099 * 120.00368 * 180.02562 * 15 14 13 18 18 C 1.32990 * 120.00493 * 186.52871 * 17 15 14 19 19 C 1.50698 * 119.99775 * 17.81783 * 18 17 15 20 20 C 1.54263 * 110.03265 * 250.99649 * 19 18 17 21 21 C 1.54893 * 104.19900 * 217.10667 * 20 19 18 22 22 C 1.54885 * 102.74503 * 37.94459 * 21 20 19 23 23 C 1.53872 * 110.03280 * 133.83458 * 19 18 17 24 24 H 1.09002 * 109.47088 * 299.99800 * 1 2 3 25 25 H 1.09007 * 109.47403 * 59.99728 * 1 2 3 26 26 H 1.08991 * 109.47330 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47218 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.46840 * 300.00322 * 3 2 1 29 29 H 1.09002 * 109.46846 * 60.00051 * 3 2 1 30 30 H 1.08997 * 109.47339 * 179.97438 * 4 2 1 31 31 H 1.08999 * 109.46912 * 300.00586 * 4 2 1 32 32 H 0.97009 * 119.99753 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.47454 * 179.97438 * 13 2 1 34 34 H 1.09006 * 109.46890 * 59.99715 * 13 2 1 35 35 H 0.96999 * 120.00140 * 359.97438 * 14 13 2 36 36 H 1.08006 * 119.99584 * 6.52857 * 17 15 14 37 37 H 1.08006 * 120.00473 * 197.82298 * 18 17 15 38 38 H 1.08995 * 110.01794 * 12.44212 * 19 18 17 39 39 H 1.08998 * 110.49113 * 335.78773 * 20 19 18 40 40 H 1.09002 * 110.48735 * 98.43227 * 20 19 18 41 41 H 1.09000 * 110.75373 * 279.63413 * 21 20 19 42 42 H 1.08995 * 110.75465 * 156.26169 * 21 20 19 43 43 H 1.09007 * 110.48470 * 203.38463 * 22 21 20 44 44 H 1.09000 * 110.60274 * 80.79252 * 22 21 20 45 45 H 1.08999 * 110.03126 * 238.57489 * 23 19 18 46 46 H 1.09004 * 110.03483 * 359.94779 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5376 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8711 -0.4815 -3.7320 8 7 2.6272 -1.5508 -3.8526 9 14 1.2489 0.3994 -5.2571 10 1 2.2272 1.4411 -5.6608 11 1 1.0843 -0.5795 -6.3617 12 1 -0.0593 1.0369 -4.9615 13 6 2.0400 -0.7212 1.2492 14 7 1.5517 -0.0306 2.4454 15 6 1.8770 -0.4913 3.6695 16 8 2.5754 -1.4806 3.7810 17 6 1.3862 0.2017 4.8706 18 6 1.8105 -0.1723 6.0742 19 6 3.0610 -1.0026 6.2079 20 6 2.6977 -2.4404 6.6327 21 6 3.8354 -2.8494 7.6010 22 6 4.1085 -1.5390 8.3802 23 6 3.9580 -0.4295 7.3190 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.1301 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1300 -0.7208 -1.2495 31 1 1.6766 -1.7489 -1.2492 32 1 2.8616 -1.8822 -4.7337 33 1 3.1300 -0.7216 1.2490 34 1 1.6766 -1.7489 1.2492 35 1 0.9944 0.7582 2.3564 36 1 0.6813 1.0144 4.7749 37 1 1.2589 0.1189 6.9559 38 1 3.6020 -1.0174 5.2618 39 1 1.7362 -2.4552 7.1459 40 1 2.6788 -3.1010 5.7659 41 1 4.7208 -3.1610 7.0470 42 1 3.5032 -3.6381 8.2759 43 1 5.1191 -1.5416 8.7887 44 1 3.3764 -1.4067 9.1768 45 1 4.9345 -0.1668 6.9122 46 1 3.4893 0.4498 7.7610 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493492836.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:13 Heat of formation + Delta-G solvation = -51.620960 kcal Electronic energy + Delta-G solvation = -21885.657018 eV Core-core repulsion = 18774.321840 eV Total energy + Delta-G solvation = -3111.335178 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.86217 -38.23153 -36.98763 -33.56789 -33.21885 -32.05646 -28.74724 -28.36815 -27.08174 -26.50493 -26.16411 -23.36818 -21.88154 -20.72804 -20.31100 -19.59060 -18.00773 -16.71535 -16.37346 -15.92359 -15.44459 -15.04483 -14.70387 -14.52369 -13.80237 -13.64833 -13.45552 -13.32455 -13.06437 -12.77931 -12.66804 -12.15524 -12.05730 -11.76630 -11.26068 -11.16942 -11.10072 -11.01697 -10.92776 -10.85333 -10.74567 -10.67722 -10.61942 -10.39323 -10.24765 -9.86817 -9.50424 -9.25945 -9.04795 -8.90943 -8.58785 -8.35838 -5.99878 -4.01125 1.34623 3.30803 3.37790 3.39461 3.45601 3.59633 4.45258 4.52972 4.59858 4.62989 4.94936 5.02100 5.34695 5.35663 5.37347 5.49728 5.50049 5.55195 5.61453 5.63194 5.64106 5.75955 5.77221 5.81928 5.95066 6.18048 6.18340 6.20844 6.25333 6.25954 6.26765 6.36776 6.40813 6.57854 6.63546 6.67756 6.82476 7.07181 7.07996 7.14090 7.64311 7.76905 7.84062 7.99006 8.40607 8.52238 9.03704 9.61964 11.11619 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.039654 B = 0.002898 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.930902 B = 9660.764339 C = 9975.957755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.073 4.073 3 C -0.127 4.127 4 C 0.036 3.964 5 C -0.511 4.511 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.889 3.111 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.275 1.275 13 C 0.129 3.871 14 N -0.718 5.718 15 C 0.536 3.464 16 O -0.541 6.541 17 C -0.224 4.224 18 C -0.055 4.055 19 C -0.087 4.087 20 C -0.105 4.105 21 C -0.126 4.126 22 C -0.124 4.124 23 C -0.119 4.119 24 H 0.029 0.971 25 H 0.066 0.934 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.066 0.934 29 H 0.029 0.971 30 H 0.018 0.982 31 H 0.018 0.982 32 H 0.260 0.740 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.398 0.602 36 H 0.125 0.875 37 H 0.120 0.880 38 H 0.114 0.886 39 H 0.058 0.942 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.062 0.938 43 H 0.061 0.939 44 H 0.062 0.938 45 H 0.064 0.936 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.424 3.686 22.047 22.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.073 4.073 3 C -0.184 4.184 4 C -0.002 4.002 5 C -0.549 4.549 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.200 1.200 13 C 0.006 3.994 14 N -0.368 5.368 15 C 0.325 3.675 16 O -0.422 6.422 17 C -0.244 4.244 18 C -0.075 4.075 19 C -0.105 4.105 20 C -0.142 4.142 21 C -0.164 4.164 22 C -0.162 4.162 23 C -0.157 4.157 24 H 0.048 0.952 25 H 0.085 0.915 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.085 0.915 29 H 0.048 0.952 30 H 0.036 0.964 31 H 0.036 0.964 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.233 0.767 36 H 0.143 0.857 37 H 0.138 0.862 38 H 0.132 0.868 39 H 0.076 0.924 40 H 0.093 0.907 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.083 0.917 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.850 2.868 21.948 22.151 hybrid contribution -0.701 0.933 -1.019 1.549 sum -1.551 3.801 20.929 21.328 Atomic orbital electron populations 1.21758 0.95311 1.01137 1.00207 1.20900 0.95443 0.95838 0.95124 1.21760 1.00517 0.95929 1.00205 1.19089 0.96333 0.95222 0.89507 1.21187 1.31160 1.12034 0.90535 0.92275 1.25016 0.95342 0.95079 0.99090 1.69969 1.36995 1.23016 1.23429 0.86648 0.79174 0.79414 0.83068 1.20777 1.21335 1.19955 1.21601 0.98821 0.96005 0.83017 1.46166 1.53103 1.31622 1.05943 1.18613 0.80367 0.84760 0.83796 1.90698 1.38120 1.26736 1.86603 1.22702 1.05784 1.02701 0.93257 1.23733 0.93956 0.93268 0.96495 1.21429 0.93768 0.94082 1.01217 1.22234 0.97559 0.95498 0.98953 1.22518 0.99054 0.96926 0.97880 1.22368 1.01053 0.95124 0.97644 1.22254 0.99637 0.98031 0.95778 0.95250 0.91458 0.93398 0.93396 0.91478 0.95232 0.96368 0.96355 0.93043 0.91886 0.91886 0.76717 0.85744 0.86201 0.86839 0.92367 0.90687 0.91448 0.91894 0.91998 0.91929 0.91748 0.92028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.23 8.05 37.16 0.30 -1.94 16 2 C -0.07 -1.38 0.54 -154.51 -0.08 -1.46 16 3 C -0.13 -2.23 8.05 37.16 0.30 -1.93 16 4 C 0.04 0.88 4.04 -27.88 -0.11 0.77 16 5 C -0.51 -13.58 7.65 -34.44 -0.26 -13.84 16 6 H 0.06 1.51 5.68 -52.49 -0.30 1.21 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 8 N -0.89 -26.49 13.29 55.43 0.74 -25.75 16 9 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 13 C 0.13 2.28 4.56 -4.04 -0.02 2.26 16 14 N -0.72 -10.49 4.95 -61.49 -0.30 -10.79 16 15 C 0.54 7.95 7.52 -12.67 -0.10 7.86 16 16 O -0.54 -9.63 12.85 5.27 0.07 -9.56 16 17 C -0.22 -2.49 10.00 -37.81 -0.38 -2.87 16 18 C -0.05 -0.56 8.44 -36.13 -0.30 -0.86 16 19 C -0.09 -0.99 2.33 -90.66 -0.21 -1.20 16 20 C -0.10 -1.16 6.16 -25.07 -0.15 -1.32 16 21 C -0.13 -1.18 6.91 -24.74 -0.17 -1.35 16 22 C -0.12 -1.03 6.83 -25.07 -0.17 -1.21 16 23 C -0.12 -1.11 6.45 -25.61 -0.17 -1.27 16 24 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 25 H 0.07 1.28 6.62 -51.93 -0.34 0.93 16 26 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.07 1.27 6.62 -51.93 -0.34 0.92 16 29 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.40 4.95 6.15 -40.82 -0.25 4.70 16 36 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 37 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 38 H 0.11 1.64 5.36 -51.93 -0.28 1.37 16 39 H 0.06 0.59 7.85 -51.93 -0.41 0.18 16 40 H 0.07 1.00 7.67 -51.93 -0.40 0.60 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.06 0.50 7.67 -51.93 -0.40 0.10 16 LS Contribution 356.24 15.07 5.37 5.37 Total: -1.00 -29.92 356.24 -8.84 -38.76 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -8.06 Total: 2.68 kcal Atomic # 6 Polarization: -15.27 SS G_CDS: -1.63 Total: -16.89 kcal Atomic # 7 Polarization: -36.98 SS G_CDS: 0.43 Total: -36.55 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.07 Total: -9.56 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.92 -8.84 -38.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493492836.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.861 kcal (2) G-P(sol) polarization free energy of solvation -29.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds