Wall clock time and date at job start Tue Mar 31 2020 01:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47382 * 2 1 4 4 C 1.52999 * 109.47267 * 239.99991 * 2 1 3 5 5 C 1.50703 * 109.46978 * 59.99670 * 4 2 1 6 6 H 1.08002 * 119.99802 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00259 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99429 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00163 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47124 * 90.00478 * 9 7 5 11 11 H 1.48506 * 109.46954 * 210.00286 * 9 7 5 12 12 H 1.48500 * 109.47143 * 330.00199 * 9 7 5 13 13 C 1.52999 * 109.47388 * 119.99905 * 2 1 3 14 14 N 1.46496 * 109.47118 * 300.00017 * 13 2 1 15 15 C 1.34776 * 120.00055 * 179.97438 * 14 13 2 16 16 O 1.21613 * 119.99807 * 359.97438 * 15 14 13 17 17 C 1.47099 * 120.00368 * 180.02562 * 15 14 13 18 18 C 1.32990 * 120.00493 * 186.52871 * 17 15 14 19 19 C 1.50698 * 119.99775 * 17.81783 * 18 17 15 20 20 C 1.54263 * 110.03265 * 250.99649 * 19 18 17 21 21 C 1.54893 * 104.19900 * 217.10667 * 20 19 18 22 22 C 1.54885 * 102.74503 * 37.94459 * 21 20 19 23 23 C 1.53872 * 110.03280 * 133.83458 * 19 18 17 24 24 H 1.09002 * 109.47088 * 299.99800 * 1 2 3 25 25 H 1.09007 * 109.47403 * 59.99728 * 1 2 3 26 26 H 1.08991 * 109.47330 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47218 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.46840 * 300.00322 * 3 2 1 29 29 H 1.09002 * 109.46846 * 60.00051 * 3 2 1 30 30 H 1.08997 * 109.47339 * 179.97438 * 4 2 1 31 31 H 1.08999 * 109.46912 * 300.00586 * 4 2 1 32 32 H 0.97009 * 119.99753 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.47454 * 179.97438 * 13 2 1 34 34 H 1.09006 * 109.46890 * 59.99715 * 13 2 1 35 35 H 0.96999 * 120.00140 * 359.97438 * 14 13 2 36 36 H 1.08006 * 119.99584 * 6.52857 * 17 15 14 37 37 H 1.08006 * 120.00473 * 197.82298 * 18 17 15 38 38 H 1.08995 * 110.01794 * 12.44212 * 19 18 17 39 39 H 1.08998 * 110.49113 * 335.78773 * 20 19 18 40 40 H 1.09002 * 110.48735 * 98.43227 * 20 19 18 41 41 H 1.09000 * 110.75373 * 279.63413 * 21 20 19 42 42 H 1.08995 * 110.75465 * 156.26169 * 21 20 19 43 43 H 1.09007 * 110.48470 * 203.38463 * 22 21 20 44 44 H 1.09000 * 110.60274 * 80.79252 * 22 21 20 45 45 H 1.08999 * 110.03126 * 238.57489 * 23 19 18 46 46 H 1.09004 * 110.03483 * 359.94779 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5376 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8711 -0.4815 -3.7320 8 7 2.6272 -1.5508 -3.8526 9 14 1.2489 0.3994 -5.2571 10 1 2.2272 1.4411 -5.6608 11 1 1.0843 -0.5795 -6.3617 12 1 -0.0593 1.0369 -4.9615 13 6 2.0400 -0.7212 1.2492 14 7 1.5517 -0.0306 2.4454 15 6 1.8770 -0.4913 3.6695 16 8 2.5754 -1.4806 3.7810 17 6 1.3862 0.2017 4.8706 18 6 1.8105 -0.1723 6.0742 19 6 3.0610 -1.0026 6.2079 20 6 2.6977 -2.4404 6.6327 21 6 3.8354 -2.8494 7.6010 22 6 4.1085 -1.5390 8.3802 23 6 3.9580 -0.4295 7.3190 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.1301 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1300 -0.7208 -1.2495 31 1 1.6766 -1.7489 -1.2492 32 1 2.8616 -1.8822 -4.7337 33 1 3.1300 -0.7216 1.2490 34 1 1.6766 -1.7489 1.2492 35 1 0.9944 0.7582 2.3564 36 1 0.6813 1.0144 4.7749 37 1 1.2589 0.1189 6.9559 38 1 3.6020 -1.0174 5.2618 39 1 1.7362 -2.4552 7.1459 40 1 2.6788 -3.1010 5.7659 41 1 4.7208 -3.1610 7.0470 42 1 3.5032 -3.6381 8.2759 43 1 5.1191 -1.5416 8.7887 44 1 3.3764 -1.4067 9.1768 45 1 4.9345 -0.1668 6.9122 46 1 3.4893 0.4498 7.7610 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493492836.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:12 Heat of formation + Delta-G solvation = -68.138351 kcal Electronic energy + Delta-G solvation = -21886.373266 eV Core-core repulsion = 18774.321840 eV Total energy + Delta-G solvation = -3112.051426 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.02935 -39.27899 -38.35892 -35.21354 -34.13250 -33.84254 -29.54581 -29.44822 -28.86833 -27.96601 -27.52081 -25.12474 -23.16073 -21.49497 -21.23795 -20.70260 -19.51832 -18.37586 -17.79210 -16.96125 -16.61951 -16.38397 -16.21948 -15.79417 -15.10760 -14.90293 -14.64360 -14.42370 -14.24106 -14.15609 -13.94643 -13.76394 -13.59056 -12.87768 -12.72781 -12.62575 -12.57344 -12.34345 -12.22893 -11.98101 -11.94969 -11.90297 -11.72130 -11.63832 -11.52253 -11.43846 -11.03090 -10.87488 -10.53157 -10.52036 -10.08569 -9.82174 -8.14666 -6.22723 0.45235 1.42065 1.42651 1.53076 2.35294 2.38708 2.47088 3.19733 3.76785 3.79957 3.86464 3.94769 4.07871 4.08532 4.22655 4.29911 4.58123 4.60190 4.68769 4.70445 4.72459 4.77200 4.79961 4.83392 4.87262 4.96397 5.04436 5.10760 5.11027 5.11857 5.19822 5.35515 5.38975 5.41489 5.49183 5.49701 5.50133 5.52203 5.53930 5.61610 5.79222 5.79716 5.89209 6.29765 6.71344 6.92637 7.38251 7.45179 8.98023 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.039654 B = 0.002898 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.930902 B = 9660.764339 C = 9975.957755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.064 4.064 3 C -0.121 4.121 4 C 0.040 3.960 5 C -0.513 4.513 6 H 0.073 0.927 7 C -0.007 4.007 8 N -0.940 5.940 9 Si 0.960 3.040 10 H -0.275 1.275 11 H -0.290 1.290 12 H -0.259 1.259 13 C 0.144 3.856 14 N -0.708 5.708 15 C 0.527 3.473 16 O -0.580 6.580 17 C -0.233 4.233 18 C -0.041 4.041 19 C -0.094 4.094 20 C -0.105 4.105 21 C -0.127 4.127 22 C -0.118 4.118 23 C -0.116 4.116 24 H 0.071 0.929 25 H 0.056 0.944 26 H 0.035 0.965 27 H 0.035 0.965 28 H 0.056 0.944 29 H 0.070 0.930 30 H -0.016 1.016 31 H -0.016 1.016 32 H 0.260 0.740 33 H 0.042 0.958 34 H 0.042 0.958 35 H 0.412 0.588 36 H 0.161 0.839 37 H 0.160 0.840 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.040 0.960 41 H 0.053 0.947 42 H 0.076 0.924 43 H 0.070 0.930 44 H 0.080 0.920 45 H 0.055 0.945 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.353 6.361 24.407 25.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.065 4.065 3 C -0.178 4.178 4 C 0.002 3.998 5 C -0.551 4.551 6 H 0.091 0.909 7 C -0.203 4.203 8 N -0.581 5.581 9 Si 0.785 3.215 10 H -0.201 1.201 11 H -0.216 1.216 12 H -0.183 1.183 13 C 0.019 3.981 14 N -0.360 5.360 15 C 0.318 3.682 16 O -0.462 6.462 17 C -0.253 4.253 18 C -0.060 4.060 19 C -0.112 4.112 20 C -0.143 4.143 21 C -0.164 4.164 22 C -0.156 4.156 23 C -0.154 4.154 24 H 0.089 0.911 25 H 0.075 0.925 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.002 0.998 31 H 0.003 0.997 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.250 0.750 36 H 0.179 0.821 37 H 0.177 0.823 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.059 0.941 41 H 0.072 0.928 42 H 0.094 0.906 43 H 0.089 0.911 44 H 0.099 0.901 45 H 0.074 0.926 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.802 5.581 24.324 25.113 hybrid contribution -0.032 0.016 -1.692 1.693 sum -2.834 5.597 22.632 23.485 Atomic orbital electron populations 1.21687 0.93556 1.00886 1.01686 1.20700 0.96715 0.96292 0.92769 1.21689 0.99799 0.94636 1.01694 1.18973 0.94171 0.94166 0.92482 1.21596 1.30426 1.12061 0.91046 0.90868 1.25974 0.95680 0.95866 1.02803 1.70132 1.38844 1.25011 1.24102 0.85522 0.79208 0.78100 0.78681 1.20118 1.21564 1.18263 1.21137 0.97478 0.95249 0.84219 1.45951 1.53343 1.31864 1.04884 1.19392 0.79528 0.84523 0.84729 1.90712 1.39756 1.28636 1.87145 1.22760 1.07153 1.04016 0.91377 1.24070 0.92867 0.91463 0.97627 1.21375 0.94780 0.94814 1.00260 1.22197 0.98985 0.94915 0.98170 1.22525 0.97880 0.98266 0.97778 1.22361 1.02165 0.93567 0.97495 1.22232 0.98853 0.99013 0.95266 0.91068 0.92543 0.94589 0.94608 0.92512 0.91081 0.99754 0.99727 0.93171 0.93999 0.93994 0.74984 0.82124 0.82257 0.90707 0.90960 0.94102 0.92822 0.90552 0.91149 0.90146 0.92641 0.89972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.10 8.05 71.98 0.58 -3.52 16 2 C -0.06 -2.47 0.54 -52.18 -0.03 -2.49 16 3 C -0.12 -4.10 8.05 71.98 0.58 -3.52 16 4 C 0.04 2.05 4.04 29.85 0.12 2.17 16 5 C -0.51 -27.75 7.65 25.60 0.20 -27.55 16 6 H 0.07 3.69 5.68 -2.91 -0.02 3.67 16 7 C -0.01 -0.37 5.46 84.65 0.46 0.09 16 8 N -0.94 -57.76 13.29 21.45 0.28 -57.47 16 9 Si 0.96 43.82 29.54 68.60 2.03 45.84 16 10 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 12 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 13 C 0.14 5.28 4.56 86.38 0.39 5.67 16 14 N -0.71 -19.93 4.95 -466.72 -2.31 -22.25 16 15 C 0.53 15.35 7.52 86.57 0.65 16.00 16 16 O -0.58 -21.54 12.85 -4.07 -0.05 -21.59 16 17 C -0.23 -4.50 10.00 23.43 0.23 -4.27 16 18 C -0.04 -0.70 8.44 24.52 0.21 -0.50 16 19 C -0.09 -2.05 2.33 -10.82 -0.03 -2.07 16 20 C -0.11 -2.30 6.16 31.67 0.20 -2.10 16 21 C -0.13 -2.28 6.91 31.89 0.22 -2.06 16 22 C -0.12 -1.68 6.83 31.67 0.22 -1.46 16 23 C -0.12 -1.91 6.45 31.32 0.20 -1.71 16 24 H 0.07 1.81 6.86 -2.39 -0.02 1.80 16 25 H 0.06 2.04 6.62 -2.38 -0.02 2.03 16 26 H 0.03 1.28 8.14 -2.39 -0.02 1.27 16 27 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.06 2.05 6.62 -2.39 -0.02 2.03 16 29 H 0.07 1.81 6.86 -2.39 -0.02 1.80 16 30 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 31 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 32 H 0.26 15.13 8.31 -92.70 -0.77 14.36 16 33 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 35 H 0.41 8.95 6.15 -92.71 -0.57 8.38 16 36 H 0.16 1.94 8.06 -2.91 -0.02 1.91 16 37 H 0.16 1.57 8.06 -2.91 -0.02 1.54 16 38 H 0.07 2.26 5.36 -2.39 -0.01 2.25 16 39 H 0.07 1.35 7.85 -2.39 -0.02 1.33 16 40 H 0.04 1.15 7.67 -2.39 -0.02 1.13 16 41 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 44 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 46 H 0.08 1.03 7.67 -2.39 -0.02 1.01 16 Total: -1.00 -69.55 356.24 4.52 -65.03 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: 0.37 Total: 17.77 kcal Atomic # 6 Polarization: -31.54 SS G_CDS: 4.20 Total: -27.33 kcal Atomic # 7 Polarization: -77.69 SS G_CDS: -2.03 Total: -79.72 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: -0.05 Total: -21.59 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Total: -69.55 4.52 -65.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493492836.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.107 kcal (2) G-P(sol) polarization free energy of solvation -69.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds