Wall clock time and date at job start Tue Mar 31 2020 02:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47320 * 2 1 4 4 C 1.50695 * 109.47059 * 239.99591 * 2 1 3 5 5 H 1.08003 * 120.00146 * 240.00641 * 4 2 1 6 6 C 1.37878 * 119.99920 * 60.00307 * 4 2 1 7 7 N 1.31511 * 119.99954 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99954 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47392 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46972 * 120.00268 * 8 6 4 11 11 H 1.48503 * 109.47343 * 239.99879 * 8 6 4 12 12 C 1.53001 * 109.46858 * 119.99754 * 2 1 3 13 13 N 1.46497 * 109.47551 * 299.99871 * 12 2 1 14 14 C 1.34770 * 120.00244 * 180.02562 * 13 12 2 15 15 O 1.21613 * 120.00304 * 359.97438 * 14 13 12 16 16 C 1.47103 * 120.00155 * 180.02562 * 14 13 12 17 17 C 1.32994 * 120.00523 * 173.03058 * 16 14 13 18 18 C 1.50702 * 119.99488 * 352.50894 * 17 16 14 19 19 C 1.53006 * 109.46740 * 205.36006 * 18 17 16 20 20 C 1.53008 * 109.46806 * 179.97438 * 19 18 17 21 21 C 1.52994 * 109.47122 * 60.00256 * 20 19 18 22 22 C 1.53006 * 109.47071 * 299.99582 * 21 20 19 23 23 C 1.52999 * 109.47309 * 85.35912 * 18 17 16 24 24 H 1.09002 * 109.46764 * 300.00794 * 1 2 3 25 25 H 1.08998 * 109.46888 * 59.99536 * 1 2 3 26 26 H 1.08996 * 109.47463 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.46735 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.46706 * 299.99643 * 3 2 1 29 29 H 1.09001 * 109.47447 * 60.00219 * 3 2 1 30 30 H 0.97006 * 119.99810 * 180.02562 * 7 6 4 31 31 H 1.09009 * 109.47174 * 179.97438 * 12 2 1 32 32 H 1.09004 * 109.47324 * 59.99930 * 12 2 1 33 33 H 0.97001 * 119.99850 * 359.97438 * 13 12 2 34 34 H 1.08000 * 119.99942 * 353.03018 * 16 14 13 35 35 H 1.07997 * 120.00490 * 172.50826 * 17 16 14 36 36 H 1.09004 * 109.47109 * 325.35310 * 18 17 16 37 37 H 1.08999 * 109.47119 * 60.00312 * 19 18 17 38 38 H 1.08995 * 109.46909 * 299.99805 * 19 18 17 39 39 H 1.09004 * 109.46822 * 179.97438 * 20 19 18 40 40 H 1.08994 * 109.46812 * 299.99837 * 20 19 18 41 41 H 1.08995 * 109.47518 * 59.99533 * 21 20 19 42 42 H 1.09002 * 109.46929 * 180.02562 * 21 20 19 43 43 H 1.08990 * 109.47265 * 180.02562 * 22 21 20 44 44 H 1.08995 * 109.46909 * 300.00324 * 22 21 20 45 45 H 1.09000 * 109.46905 * 60.00328 * 23 18 17 46 46 H 1.08990 * 109.47224 * 299.99671 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6531 -1.5887 -1.1312 6 6 1.6992 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0078 9 1 3.1473 -2.2865 -3.6037 10 1 1.1677 -1.5867 -4.8164 11 1 3.1473 -0.1860 -4.8160 12 6 2.0399 -0.7212 1.2493 13 7 1.5516 -0.0306 2.4455 14 6 1.8776 -0.4907 3.6695 15 8 2.5767 -1.4795 3.7812 16 6 1.3868 0.2024 4.8706 17 6 1.5904 -0.3267 6.0737 18 6 2.1711 -1.7117 6.1992 19 6 1.7386 -2.3271 7.5315 20 6 2.3276 -3.7336 7.6587 21 6 3.8545 -3.6537 7.6056 22 6 4.2870 -3.0382 6.2733 23 6 3.6980 -1.6312 6.1463 24 1 -0.3633 0.5140 0.8899 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 3.1301 1.4424 0.0005 28 1 1.6767 1.9562 -0.8900 29 1 1.6768 1.9564 0.8900 30 1 0.7090 1.1613 -3.4845 31 1 3.1300 -0.7216 1.2491 32 1 1.6766 -1.7489 1.2494 33 1 0.9943 0.7583 2.3564 34 1 0.8612 1.1410 4.7755 35 1 1.3396 0.2361 6.9606 36 1 1.8112 -2.3323 5.3785 37 1 0.6507 -2.3845 7.5691 38 1 2.0984 -1.7066 8.3522 39 1 2.0198 -4.1719 8.6081 40 1 1.9674 -4.3538 6.8380 41 1 4.2147 -3.0334 8.4263 42 1 4.2741 -4.6557 7.6957 43 1 5.3748 -2.9817 6.2352 44 1 3.9269 -3.6585 5.4526 45 1 4.0578 -1.0107 6.9670 46 1 4.0061 -1.1928 5.1972 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493661297.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:12:36 Heat of formation + Delta-G solvation = -65.038140 kcal Electronic energy + Delta-G solvation = -22415.243799 eV Core-core repulsion = 19303.326808 eV Total energy + Delta-G solvation = -3111.916991 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.99739 -39.30835 -38.01213 -34.99232 -34.55866 -32.75184 -31.53753 -30.48492 -27.57267 -27.53058 -26.91167 -24.19989 -23.37335 -22.49196 -20.72132 -20.59799 -20.23364 -18.14880 -17.59734 -16.77567 -16.56267 -16.18116 -16.00028 -15.28672 -15.06641 -14.81471 -14.72605 -14.42030 -14.38664 -14.16181 -13.87987 -13.28992 -13.20010 -13.10651 -12.96136 -12.70246 -12.58715 -12.55877 -12.27436 -12.15460 -12.03789 -11.90868 -11.49372 -11.36608 -11.21657 -11.15326 -10.90345 -10.71851 -10.40858 -10.36198 -10.17401 -9.70354 -8.03451 -6.19266 0.56431 1.40085 1.44071 1.53678 2.40337 2.45454 2.60187 3.19953 3.74778 3.92279 3.97259 4.07218 4.29364 4.39942 4.46732 4.50030 4.52357 4.61594 4.70021 4.70980 4.71627 4.79464 4.88140 4.96046 5.00551 5.05326 5.10722 5.18997 5.19833 5.23491 5.31143 5.34095 5.37430 5.40683 5.49754 5.55838 5.58073 5.66124 5.66344 5.74181 5.83277 6.14179 6.21363 6.42948 6.81924 6.85402 7.46962 7.48576 8.95647 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.029378 B = 0.003482 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.849492 B = 8039.644702 C = 8570.881913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.051 3.949 3 C -0.120 4.120 4 C -0.529 4.529 5 H 0.042 0.958 6 C 0.028 3.972 7 N -0.899 5.899 8 Si 0.945 3.055 9 H -0.276 1.276 10 H -0.280 1.280 11 H -0.280 1.280 12 C 0.152 3.848 13 N -0.712 5.712 14 C 0.520 3.480 15 O -0.571 6.571 16 C -0.230 4.230 17 C -0.048 4.048 18 C -0.069 4.069 19 C -0.111 4.111 20 C -0.120 4.120 21 C -0.114 4.114 22 C -0.116 4.116 23 C -0.094 4.094 24 H 0.037 0.963 25 H 0.062 0.938 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.062 0.938 29 H 0.037 0.963 30 H 0.260 0.740 31 H 0.034 0.966 32 H 0.034 0.966 33 H 0.406 0.594 34 H 0.153 0.847 35 H 0.160 0.840 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.044 0.956 41 H 0.073 0.927 42 H 0.063 0.937 43 H 0.058 0.942 44 H 0.037 0.963 45 H 0.064 0.936 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.099 -1.142 20.953 20.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.050 3.950 3 C -0.177 4.177 4 C -0.567 4.567 5 H 0.061 0.939 6 C -0.172 4.172 7 N -0.538 5.538 8 Si 0.772 3.228 9 H -0.201 1.201 10 H -0.206 1.206 11 H -0.206 1.206 12 C 0.028 3.972 13 N -0.363 5.363 14 C 0.311 3.689 15 O -0.454 6.454 16 C -0.250 4.250 17 C -0.067 4.067 18 C -0.087 4.087 19 C -0.148 4.148 20 C -0.157 4.157 21 C -0.151 4.151 22 C -0.154 4.154 23 C -0.131 4.131 24 H 0.056 0.944 25 H 0.081 0.919 26 H 0.035 0.965 27 H 0.035 0.965 28 H 0.081 0.919 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.243 0.757 34 H 0.171 0.829 35 H 0.178 0.822 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.063 0.937 41 H 0.091 0.909 42 H 0.082 0.918 43 H 0.077 0.923 44 H 0.056 0.944 45 H 0.083 0.917 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.507 -1.718 20.846 20.922 hybrid contribution 0.137 -0.179 -1.682 1.697 sum 0.644 -1.897 19.163 19.268 Atomic orbital electron populations 1.21657 0.97166 0.98536 1.00370 1.18351 0.93205 0.93020 0.90402 1.21661 0.97807 0.97893 1.00381 1.21312 1.31631 1.12091 0.91694 0.93924 1.25461 0.95148 0.95609 1.00989 1.69916 1.37064 1.23299 1.23546 0.85703 0.78160 0.78720 0.80209 1.20083 1.20631 1.20622 1.21162 0.96675 0.94848 0.84526 1.46099 1.52831 1.31947 1.05431 1.19390 0.80561 0.84262 0.84698 1.90726 1.39733 1.27822 1.87117 1.22764 1.07083 1.03421 0.91759 1.24066 0.90222 0.95093 0.97366 1.20497 0.95893 0.93975 0.98369 1.21649 1.00437 0.96388 0.96327 1.21524 0.95535 0.97003 1.01662 1.21524 0.95980 1.00775 0.96854 1.21467 0.99695 0.96507 0.97713 1.21347 0.94050 0.96908 1.00839 0.94449 0.91899 0.96486 0.96461 0.91894 0.94429 0.93015 0.94764 0.94809 0.75709 0.82940 0.82220 0.91572 0.91518 0.90266 0.90401 0.93718 0.90854 0.91846 0.92349 0.94423 0.91701 0.93496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.41 8.08 71.98 0.58 -4.83 16 2 C 0.05 2.40 0.50 -52.93 -0.03 2.37 16 3 C -0.12 -5.41 8.08 71.98 0.58 -4.83 16 4 C -0.53 -28.51 8.01 25.60 0.21 -28.31 16 5 H 0.04 2.36 7.74 -2.91 -0.02 2.34 16 6 C 0.03 1.47 5.15 84.66 0.44 1.91 16 7 N -0.90 -48.47 9.35 21.45 0.20 -48.27 16 8 Si 0.95 43.13 29.54 68.60 2.03 45.16 16 9 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 10 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 11 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 12 C 0.15 6.64 4.50 86.38 0.39 7.03 16 13 N -0.71 -25.15 4.95 -466.71 -2.31 -27.46 16 14 C 0.52 17.56 7.58 86.57 0.66 18.22 16 15 O -0.57 -22.71 11.04 -4.07 -0.04 -22.76 16 16 C -0.23 -5.45 10.02 23.43 0.23 -5.21 16 17 C -0.05 -0.97 8.85 24.52 0.22 -0.75 16 18 C -0.07 -1.64 1.62 -11.54 -0.02 -1.66 16 19 C -0.11 -1.93 5.18 30.60 0.16 -1.77 16 20 C -0.12 -2.14 5.92 30.59 0.18 -1.96 16 21 C -0.11 -2.09 5.92 30.59 0.18 -1.90 16 22 C -0.12 -2.82 5.93 30.61 0.18 -2.64 16 23 C -0.09 -2.39 4.61 30.61 0.14 -2.25 16 24 H 0.04 1.42 6.86 -2.39 -0.02 1.40 16 25 H 0.06 3.15 6.07 -2.39 -0.01 3.14 16 26 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 28 H 0.06 3.15 6.07 -2.39 -0.01 3.14 16 29 H 0.04 1.42 6.86 -2.39 -0.02 1.40 16 30 H 0.26 13.45 8.31 -92.70 -0.77 12.68 16 31 H 0.03 1.60 8.14 -2.38 -0.02 1.58 16 32 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.41 12.58 6.15 -92.71 -0.57 12.01 16 34 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 35 H 0.16 1.96 8.05 -2.91 -0.02 1.94 16 36 H 0.07 2.10 6.12 -2.39 -0.01 2.09 16 37 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 40 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 46 H 0.05 1.52 6.11 -2.39 -0.01 1.51 16 Total: -1.00 -60.91 348.42 4.34 -56.57 By element: Atomic # 1 Polarization: 22.98 SS G_CDS: 0.37 Total: 23.35 kcal Atomic # 6 Polarization: -30.69 SS G_CDS: 4.10 Total: -26.59 kcal Atomic # 7 Polarization: -73.62 SS G_CDS: -2.11 Total: -75.73 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: -0.04 Total: -22.76 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -60.91 4.34 -56.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493661297.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.463 kcal (2) G-P(sol) polarization free energy of solvation -60.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds