Wall clock time and date at job start Tue Mar 31 2020 01:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47353 * 2 1 4 4 C 1.53003 * 109.47156 * 239.99934 * 2 1 3 5 5 C 1.50699 * 109.47265 * 120.00300 * 2 1 3 6 6 C 1.32994 * 120.00089 * 359.97438 * 5 2 1 7 7 C 1.47100 * 120.00497 * 180.27773 * 6 5 2 8 8 O 1.21620 * 119.99330 * 354.79465 * 7 6 5 9 9 N 1.34769 * 120.00349 * 174.79947 * 7 6 5 10 10 C 1.46928 * 120.62946 * 4.95477 * 9 7 6 11 11 C 1.53630 * 108.54116 * 126.37380 * 10 9 7 12 12 C 1.53040 * 109.24156 * 54.85703 * 11 10 9 13 13 C 1.52998 * 109.44599 * 178.50178 * 12 11 10 14 14 C 1.50701 * 109.46966 * 295.05569 * 13 12 11 15 15 H 1.08004 * 119.99864 * 0.02562 * 14 13 12 16 16 C 1.37873 * 120.00116 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00072 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00146 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47008 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47167 * 120.00166 * 18 16 14 21 21 H 1.48497 * 109.47679 * 240.00711 * 18 16 14 22 22 C 1.53047 * 109.53628 * 298.50929 * 12 11 10 23 23 C 1.46924 * 120.63148 * 185.24220 * 9 7 6 24 24 H 1.08998 * 109.46763 * 299.99944 * 1 2 3 25 25 H 1.09001 * 109.46831 * 59.99769 * 1 2 3 26 26 H 1.08992 * 109.47452 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47290 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47340 * 299.99919 * 3 2 1 29 29 H 1.08998 * 109.47140 * 60.00287 * 3 2 1 30 30 H 1.08992 * 109.47158 * 300.00447 * 4 2 1 31 31 H 1.09001 * 109.47009 * 60.00405 * 4 2 1 32 32 H 1.09003 * 109.47166 * 180.02562 * 4 2 1 33 33 H 1.08006 * 120.00383 * 179.97438 * 5 2 1 34 34 H 1.08006 * 119.99527 * 0.02562 * 6 5 2 35 35 H 1.08997 * 109.59056 * 246.20178 * 10 9 7 36 36 H 1.09000 * 109.58824 * 6.63405 * 10 9 7 37 37 H 1.09001 * 109.63137 * 294.86593 * 11 10 9 38 38 H 1.08997 * 109.42859 * 174.72612 * 11 10 9 39 39 H 1.08998 * 109.46118 * 58.53086 * 12 11 10 40 40 H 1.08993 * 109.47870 * 55.05719 * 13 12 11 41 41 H 1.09001 * 109.47066 * 175.06641 * 13 12 11 42 42 H 0.97005 * 119.99714 * 179.97438 * 17 16 14 43 43 H 1.08995 * 109.50088 * 301.41574 * 22 12 11 44 44 H 1.08999 * 109.49284 * 181.31562 * 22 12 11 45 45 H 1.08999 * 109.58496 * 353.36825 * 23 9 7 46 46 H 1.08997 * 109.58728 * 113.65209 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0323 -0.7105 1.2304 6 6 1.1682 -1.2155 2.1061 7 6 1.6584 -1.9037 3.3102 8 8 2.8504 -2.0944 3.4587 9 7 0.7868 -2.3228 4.2488 10 6 -0.6614 -2.1975 4.0348 11 6 -1.3072 -3.5756 4.2443 12 6 -0.9202 -4.1094 5.6254 13 6 -1.5913 -5.4652 5.8539 14 6 -3.0867 -5.2841 5.8995 15 1 -3.5155 -4.3004 5.7773 16 6 -3.9074 -6.3743 6.0963 17 7 -3.3853 -7.5722 6.2446 18 14 -5.7611 -6.1500 6.1521 19 1 -6.0920 -4.7151 5.9598 20 1 -6.3895 -6.9516 5.0716 21 1 -6.2754 -6.6047 7.4689 22 6 0.5995 -4.2732 5.7033 23 6 1.2668 -2.9081 5.5081 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1301 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.6766 -1.7488 -1.2493 31 1 1.6767 -0.2074 -2.1392 32 1 3.1300 -0.7217 -1.2490 33 1 3.0942 -0.8095 1.4011 34 1 0.1063 -1.1168 1.9351 35 1 -1.0758 -1.4847 4.7477 36 1 -0.8522 -1.8537 3.0182 37 1 -0.9563 -4.2650 3.4763 38 1 -2.3913 -3.4813 4.1814 39 1 -1.2495 -3.4074 6.3914 40 1 -1.3319 -6.1410 5.0391 41 1 -1.2474 -5.8862 6.7987 42 1 -3.9628 -8.3392 6.3834 43 1 0.9324 -4.9560 4.9216 44 1 0.8725 -4.6753 6.6789 45 1 2.3487 -3.0333 5.4638 46 1 1.0087 -2.2507 6.3383 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493801087.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:26 Heat of formation + Delta-G solvation = -50.278222 kcal Electronic energy + Delta-G solvation = -22094.436748 eV Core-core repulsion = 18983.159796 eV Total energy + Delta-G solvation = -3111.276953 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.02660 -38.13316 -37.12418 -33.97919 -32.32657 -31.68216 -30.46875 -28.04818 -27.62185 -27.53099 -25.06525 -23.53057 -22.72407 -21.46690 -19.83250 -18.77254 -18.16469 -17.23660 -16.30113 -15.79132 -15.19679 -14.88147 -14.54859 -14.44518 -14.39499 -13.76595 -13.62038 -13.26520 -12.97048 -12.75023 -12.63070 -12.50211 -12.30461 -11.96800 -11.94076 -11.78284 -11.32471 -11.25903 -11.17206 -10.96920 -10.94972 -10.78780 -10.69965 -10.45739 -10.10626 -9.77261 -9.53286 -9.50174 -9.24499 -8.95932 -8.36964 -8.28408 -6.00890 -4.02962 1.38109 3.22611 3.29057 3.37071 3.39690 3.41908 4.32665 4.44139 4.50395 4.68662 4.81322 4.98693 5.11697 5.27379 5.31654 5.33277 5.34238 5.44079 5.48100 5.51669 5.54934 5.58104 5.58712 5.70091 5.73706 5.79098 5.86637 5.94658 6.00358 6.00845 6.10013 6.22805 6.37879 6.39985 6.44215 6.54774 6.74130 6.97455 7.00104 7.11060 7.63871 7.66734 7.81299 7.99094 8.35913 8.41305 9.03849 9.60934 11.10410 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.022262 B = 0.003498 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.420369 B = 8002.654611 C = 8813.737235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.048 4.048 3 C -0.138 4.138 4 C -0.139 4.139 5 C -0.061 4.061 6 C -0.217 4.217 7 C 0.544 3.456 8 O -0.559 6.559 9 N -0.601 5.601 10 C 0.102 3.898 11 C -0.119 4.119 12 C -0.081 4.081 13 C 0.027 3.973 14 C -0.515 4.515 15 H 0.056 0.944 16 C 0.056 3.944 17 N -0.895 5.895 18 Si 0.889 3.111 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.285 1.285 22 C -0.129 4.129 23 C 0.112 3.888 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.124 0.876 34 H 0.135 0.865 35 H 0.066 0.934 36 H 0.079 0.921 37 H 0.059 0.941 38 H 0.084 0.916 39 H 0.058 0.942 40 H 0.015 0.985 41 H 0.016 0.984 42 H 0.259 0.741 43 H 0.060 0.940 44 H 0.070 0.930 45 H 0.085 0.915 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.327 16.260 -11.590 21.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.048 4.048 3 C -0.195 4.195 4 C -0.196 4.196 5 C -0.081 4.081 6 C -0.237 4.237 7 C 0.335 3.665 8 O -0.440 6.440 9 N -0.332 5.332 10 C -0.020 4.020 11 C -0.157 4.157 12 C -0.099 4.099 13 C -0.010 4.010 14 C -0.554 4.554 15 H 0.075 0.925 16 C -0.145 4.145 17 N -0.535 5.535 18 Si 0.717 3.283 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.167 4.167 23 C -0.011 4.011 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.142 0.858 34 H 0.152 0.848 35 H 0.085 0.915 36 H 0.097 0.903 37 H 0.078 0.922 38 H 0.103 0.897 39 H 0.076 0.924 40 H 0.034 0.966 41 H 0.034 0.966 42 H 0.069 0.931 43 H 0.079 0.921 44 H 0.088 0.912 45 H 0.103 0.897 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.882 15.969 -11.457 21.568 hybrid contribution -1.237 -0.135 0.157 1.254 sum 7.646 15.834 -11.300 20.901 Atomic orbital electron populations 1.22019 0.93987 1.02456 1.02186 1.19771 0.96063 0.95499 0.93462 1.21826 1.01299 0.94280 1.02100 1.21830 1.01311 1.00507 0.95935 1.23667 1.00207 0.91683 0.92497 1.22933 1.01199 1.03654 0.95947 1.18605 0.85727 0.78723 0.83466 1.90734 1.16124 1.58213 1.78914 1.48048 1.06967 1.60277 1.17958 1.22097 0.79135 0.99410 1.01387 1.21986 1.01272 0.93858 0.98577 1.21192 0.92410 1.00798 0.95532 1.19130 0.94751 0.90154 0.96963 1.21275 0.91675 0.93545 1.48878 0.92538 1.25030 0.98614 0.95370 0.95512 1.69978 1.34948 0.98712 1.49824 0.86591 0.85994 0.78148 0.77581 1.19751 1.21103 1.21100 1.22021 0.97335 0.95374 1.01982 1.21663 0.99956 0.94938 0.84495 0.92058 0.92186 0.91901 0.92293 0.92101 0.92351 0.92202 0.92099 0.92279 0.85803 0.84768 0.91549 0.90302 0.92239 0.89714 0.92354 0.96639 0.96590 0.93103 0.92078 0.91167 0.89707 0.91860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 7.13 37.16 0.26 -0.87 16 2 C -0.05 -0.39 0.99 -155.66 -0.15 -0.54 16 3 C -0.14 -0.97 8.46 37.16 0.31 -0.66 16 4 C -0.14 -1.03 8.46 37.16 0.31 -0.72 16 5 C -0.06 -0.66 8.33 -36.13 -0.30 -0.96 16 6 C -0.22 -2.65 8.31 -37.81 -0.31 -2.96 16 7 C 0.54 8.59 7.63 -12.67 -0.10 8.49 16 8 O -0.56 -10.51 15.65 5.26 0.08 -10.43 16 9 N -0.60 -9.21 2.97 -173.89 -0.52 -9.73 16 10 C 0.10 1.42 6.35 -3.48 -0.02 1.39 16 11 C -0.12 -2.06 5.20 -26.38 -0.14 -2.19 16 12 C -0.08 -1.57 2.10 -90.58 -0.19 -1.76 16 13 C 0.03 0.67 4.45 -27.88 -0.12 0.55 16 14 C -0.52 -13.93 8.39 -34.44 -0.29 -14.22 16 15 H 0.06 1.47 7.06 -52.48 -0.37 1.10 16 16 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 17 N -0.90 -26.60 13.29 55.43 0.74 -25.86 16 18 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 19 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 C -0.13 -2.23 5.36 -26.61 -0.14 -2.38 16 23 C 0.11 1.74 6.44 -3.71 -0.02 1.72 16 24 H 0.06 0.46 7.50 -51.93 -0.39 0.07 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.50 7.50 -51.93 -0.39 0.11 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.12 1.47 7.50 -52.48 -0.39 1.08 16 34 H 0.13 1.39 3.60 -52.48 -0.19 1.20 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.08 0.91 5.37 -51.93 -0.28 0.63 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.08 1.54 6.91 -51.93 -0.36 1.18 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 43 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 45 H 0.08 1.37 6.99 -51.93 -0.36 1.00 16 46 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 358.67 15.07 5.41 5.41 Total: -1.00 -31.26 358.67 -8.52 -39.78 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -8.21 Total: -1.67 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: -1.00 Total: -13.64 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: 0.22 Total: -35.59 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.08 Total: -10.43 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.26 -8.52 -39.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493801087.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.502 kcal (2) G-P(sol) polarization free energy of solvation -31.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds