Wall clock time and date at job start Tue Mar 31 2020 01:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47353 * 2 1 4 4 C 1.53003 * 109.47156 * 239.99934 * 2 1 3 5 5 C 1.50699 * 109.47265 * 120.00300 * 2 1 3 6 6 C 1.32994 * 120.00089 * 359.97438 * 5 2 1 7 7 C 1.47100 * 120.00497 * 180.27773 * 6 5 2 8 8 O 1.21620 * 119.99330 * 354.79465 * 7 6 5 9 9 N 1.34769 * 120.00349 * 174.79947 * 7 6 5 10 10 C 1.46928 * 120.62946 * 4.95477 * 9 7 6 11 11 C 1.53630 * 108.54116 * 126.37380 * 10 9 7 12 12 C 1.53040 * 109.24156 * 54.85703 * 11 10 9 13 13 C 1.52998 * 109.44599 * 178.50178 * 12 11 10 14 14 C 1.50701 * 109.46966 * 295.05569 * 13 12 11 15 15 H 1.08004 * 119.99864 * 0.02562 * 14 13 12 16 16 C 1.37873 * 120.00116 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00072 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00146 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47008 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47167 * 120.00166 * 18 16 14 21 21 H 1.48497 * 109.47679 * 240.00711 * 18 16 14 22 22 C 1.53047 * 109.53628 * 298.50929 * 12 11 10 23 23 C 1.46924 * 120.63148 * 185.24220 * 9 7 6 24 24 H 1.08998 * 109.46763 * 299.99944 * 1 2 3 25 25 H 1.09001 * 109.46831 * 59.99769 * 1 2 3 26 26 H 1.08992 * 109.47452 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47290 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47340 * 299.99919 * 3 2 1 29 29 H 1.08998 * 109.47140 * 60.00287 * 3 2 1 30 30 H 1.08992 * 109.47158 * 300.00447 * 4 2 1 31 31 H 1.09001 * 109.47009 * 60.00405 * 4 2 1 32 32 H 1.09003 * 109.47166 * 180.02562 * 4 2 1 33 33 H 1.08006 * 120.00383 * 179.97438 * 5 2 1 34 34 H 1.08006 * 119.99527 * 0.02562 * 6 5 2 35 35 H 1.08997 * 109.59056 * 246.20178 * 10 9 7 36 36 H 1.09000 * 109.58824 * 6.63405 * 10 9 7 37 37 H 1.09001 * 109.63137 * 294.86593 * 11 10 9 38 38 H 1.08997 * 109.42859 * 174.72612 * 11 10 9 39 39 H 1.08998 * 109.46118 * 58.53086 * 12 11 10 40 40 H 1.08993 * 109.47870 * 55.05719 * 13 12 11 41 41 H 1.09001 * 109.47066 * 175.06641 * 13 12 11 42 42 H 0.97005 * 119.99714 * 179.97438 * 17 16 14 43 43 H 1.08995 * 109.50088 * 301.41574 * 22 12 11 44 44 H 1.08999 * 109.49284 * 181.31562 * 22 12 11 45 45 H 1.08999 * 109.58496 * 353.36825 * 23 9 7 46 46 H 1.08997 * 109.58728 * 113.65209 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0323 -0.7105 1.2304 6 6 1.1682 -1.2155 2.1061 7 6 1.6584 -1.9037 3.3102 8 8 2.8504 -2.0944 3.4587 9 7 0.7868 -2.3228 4.2488 10 6 -0.6614 -2.1975 4.0348 11 6 -1.3072 -3.5756 4.2443 12 6 -0.9202 -4.1094 5.6254 13 6 -1.5913 -5.4652 5.8539 14 6 -3.0867 -5.2841 5.8995 15 1 -3.5155 -4.3004 5.7773 16 6 -3.9074 -6.3743 6.0963 17 7 -3.3853 -7.5722 6.2446 18 14 -5.7611 -6.1500 6.1521 19 1 -6.0920 -4.7151 5.9598 20 1 -6.3895 -6.9516 5.0716 21 1 -6.2754 -6.6047 7.4689 22 6 0.5995 -4.2732 5.7033 23 6 1.2668 -2.9081 5.5081 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1301 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.6766 -1.7488 -1.2493 31 1 1.6767 -0.2074 -2.1392 32 1 3.1300 -0.7217 -1.2490 33 1 3.0942 -0.8095 1.4011 34 1 0.1063 -1.1168 1.9351 35 1 -1.0758 -1.4847 4.7477 36 1 -0.8522 -1.8537 3.0182 37 1 -0.9563 -4.2650 3.4763 38 1 -2.3913 -3.4813 4.1814 39 1 -1.2495 -3.4074 6.3914 40 1 -1.3319 -6.1410 5.0391 41 1 -1.2474 -5.8862 6.7987 42 1 -3.9628 -8.3392 6.3834 43 1 0.9324 -4.9560 4.9216 44 1 0.8725 -4.6753 6.6789 45 1 2.3487 -3.0333 5.4638 46 1 1.0087 -2.2507 6.3383 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493801087.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:25 Heat of formation + Delta-G solvation = -66.698092 kcal Electronic energy + Delta-G solvation = -22095.148767 eV Core-core repulsion = 18983.159796 eV Total energy + Delta-G solvation = -3111.988972 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.24659 -39.07836 -38.32515 -35.69196 -34.05239 -32.85459 -31.66498 -29.81369 -28.19842 -28.08136 -26.64735 -24.85473 -24.10285 -22.91248 -21.19779 -19.94950 -19.10369 -18.42770 -18.29472 -16.97900 -16.53153 -16.23813 -15.85532 -15.42911 -15.10236 -15.03182 -14.93077 -14.52818 -14.44225 -14.22929 -13.96033 -13.44944 -13.16367 -13.04721 -12.96089 -12.84663 -12.69163 -12.53486 -12.52521 -12.30140 -12.15508 -11.92059 -11.89655 -11.74209 -11.59142 -11.37648 -11.14750 -10.84330 -10.73384 -10.51979 -10.42382 -9.57248 -8.15634 -6.25404 0.40190 1.42220 1.42972 1.55422 2.05956 2.28945 2.43738 3.18317 3.46388 3.82994 3.85688 3.98321 4.04173 4.09830 4.13035 4.20272 4.29129 4.39866 4.43922 4.60076 4.66657 4.77424 4.80874 4.82060 4.88548 4.92799 4.95016 5.02026 5.04935 5.08460 5.15429 5.24298 5.27564 5.31918 5.34020 5.38484 5.44481 5.47394 5.55597 5.58508 5.63341 5.81942 5.89915 6.29251 6.45933 6.91805 7.15406 7.43625 8.96716 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.022262 B = 0.003498 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.420369 B = 8002.654611 C = 8813.737235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.046 4.046 3 C -0.137 4.137 4 C -0.139 4.139 5 C -0.044 4.044 6 C -0.231 4.231 7 C 0.538 3.462 8 O -0.598 6.598 9 N -0.604 5.604 10 C 0.111 3.889 11 C -0.114 4.114 12 C -0.073 4.073 13 C 0.032 3.968 14 C -0.524 4.524 15 H 0.070 0.930 16 C -0.006 4.006 17 N -0.939 5.939 18 Si 0.962 3.038 19 H -0.255 1.255 20 H -0.283 1.283 21 H -0.284 1.284 22 C -0.121 4.121 23 C 0.117 3.883 24 H 0.064 0.936 25 H 0.074 0.926 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.076 0.924 29 H 0.056 0.944 30 H 0.050 0.950 31 H 0.077 0.923 32 H 0.058 0.942 33 H 0.109 0.891 34 H 0.157 0.843 35 H 0.087 0.913 36 H 0.108 0.892 37 H 0.043 0.957 38 H 0.079 0.921 39 H 0.065 0.935 40 H -0.017 1.017 41 H -0.015 1.015 42 H 0.260 0.740 43 H 0.042 0.958 44 H 0.071 0.929 45 H 0.078 0.922 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.003 19.015 -12.835 23.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.046 4.046 3 C -0.194 4.194 4 C -0.196 4.196 5 C -0.064 4.064 6 C -0.251 4.251 7 C 0.330 3.670 8 O -0.482 6.482 9 N -0.335 5.335 10 C -0.011 4.011 11 C -0.152 4.152 12 C -0.092 4.092 13 C -0.005 4.005 14 C -0.562 4.562 15 H 0.088 0.912 16 C -0.202 4.202 17 N -0.580 5.580 18 Si 0.787 3.213 19 H -0.178 1.178 20 H -0.209 1.209 21 H -0.210 1.210 22 C -0.160 4.160 23 C -0.005 4.005 24 H 0.083 0.917 25 H 0.093 0.907 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.095 0.905 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.096 0.904 32 H 0.077 0.923 33 H 0.127 0.873 34 H 0.174 0.826 35 H 0.105 0.895 36 H 0.126 0.874 37 H 0.062 0.938 38 H 0.097 0.903 39 H 0.084 0.916 40 H 0.001 0.999 41 H 0.003 0.997 42 H 0.069 0.931 43 H 0.061 0.939 44 H 0.090 0.910 45 H 0.096 0.904 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 7.546 18.747 -12.706 23.871 hybrid contribution -0.743 -1.033 0.525 1.376 sum 6.804 17.714 -12.181 22.549 Atomic orbital electron populations 1.22042 0.93157 1.02463 1.03131 1.19842 0.96750 0.95891 0.92164 1.21828 1.01328 0.93375 1.02841 1.21845 1.01361 1.00160 0.96244 1.23892 0.99424 0.90140 0.92945 1.22887 1.02380 1.04806 0.95030 1.19211 0.85243 0.78335 0.84172 1.90711 1.17785 1.59922 1.79797 1.48149 1.07645 1.60002 1.17718 1.22133 0.77814 0.97276 1.03887 1.21878 1.01178 0.95751 0.96411 1.21044 0.93179 0.97638 0.97312 1.19025 0.94854 0.92571 0.94058 1.21702 0.92619 0.94050 1.47862 0.91235 1.25999 1.03993 0.95028 0.95219 1.70131 1.36901 0.99738 1.51246 0.85441 0.79534 0.78945 0.77396 1.17849 1.20866 1.20987 1.21906 0.96074 0.96501 1.01494 1.21563 0.99319 0.93993 0.85632 0.91708 0.90736 0.92346 0.92353 0.90467 0.92519 0.93047 0.90388 0.92319 0.87300 0.82617 0.89495 0.87355 0.93823 0.90255 0.91643 0.99898 0.99659 0.93089 0.93901 0.91020 0.90404 0.89814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 7.13 71.98 0.51 -1.31 16 2 C -0.05 -0.64 0.99 -52.93 -0.05 -0.70 16 3 C -0.14 -1.56 8.46 71.98 0.61 -0.95 16 4 C -0.14 -1.77 8.46 71.98 0.61 -1.17 16 5 C -0.04 -0.89 8.33 24.52 0.20 -0.68 16 6 C -0.23 -5.22 8.31 23.43 0.19 -5.03 16 7 C 0.54 16.49 7.63 86.57 0.66 17.15 16 8 O -0.60 -22.61 15.65 -4.09 -0.06 -22.68 16 9 N -0.60 -17.69 2.97 -822.33 -2.44 -20.13 16 10 C 0.11 2.78 6.35 86.51 0.55 3.33 16 11 C -0.11 -3.84 5.20 30.82 0.16 -3.68 16 12 C -0.07 -2.85 2.10 -10.77 -0.02 -2.87 16 13 C 0.03 1.65 4.45 29.85 0.13 1.79 16 14 C -0.52 -28.50 8.39 25.60 0.21 -28.28 16 15 H 0.07 3.52 7.06 -2.91 -0.02 3.50 16 16 C -0.01 -0.31 5.46 84.65 0.46 0.15 16 17 N -0.94 -57.25 13.29 21.45 0.28 -56.96 16 18 Si 0.96 43.29 29.54 68.60 2.03 45.31 16 19 H -0.25 -10.64 7.11 99.48 0.71 -9.93 16 20 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 21 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 22 C -0.12 -4.27 5.36 30.67 0.16 -4.11 16 23 C 0.12 3.57 6.44 86.36 0.56 4.13 16 24 H 0.06 0.75 7.50 -2.39 -0.02 0.73 16 25 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.06 0.77 7.50 -2.39 -0.02 0.75 16 27 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.11 2.54 7.50 -2.91 -0.02 2.52 16 34 H 0.16 2.76 3.60 -2.91 -0.01 2.75 16 35 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.11 2.12 5.37 -2.39 -0.01 2.10 16 37 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.08 2.76 6.91 -2.39 -0.02 2.75 16 39 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 40 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 41 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 42 H 0.26 14.96 8.31 -92.70 -0.77 14.19 16 43 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 45 H 0.08 2.51 6.99 -2.39 -0.02 2.49 16 46 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -69.20 358.67 5.69 -63.51 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: 0.92 Total: 13.18 kcal Atomic # 6 Polarization: -27.19 SS G_CDS: 4.95 Total: -22.24 kcal Atomic # 7 Polarization: -74.94 SS G_CDS: -2.15 Total: -77.09 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: -0.06 Total: -22.68 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Total: -69.20 5.69 -63.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493801087.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.183 kcal (2) G-P(sol) polarization free energy of solvation -69.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds