Wall clock time and date at job start Tue Mar 31 2020 01:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47175 * 2 1 4 4 C 1.53003 * 109.47219 * 240.00210 * 2 1 3 5 5 C 1.50705 * 109.47165 * 120.00190 * 2 1 3 6 6 C 1.32993 * 119.99989 * 46.59712 * 5 2 1 7 7 C 1.47098 * 119.99890 * 7.22020 * 6 5 2 8 8 O 1.21606 * 120.00371 * 6.85688 * 7 6 5 9 9 N 1.34782 * 119.99657 * 187.13154 * 7 6 5 10 10 C 1.46920 * 120.63265 * 4.64134 * 9 7 6 11 11 C 1.52763 * 109.00682 * 233.58120 * 10 9 7 12 12 C 1.53034 * 109.38472 * 305.58837 * 11 10 9 13 13 C 1.52997 * 109.45105 * 181.25309 * 12 11 10 14 14 C 1.50707 * 109.47179 * 64.93580 * 13 12 11 15 15 H 1.07995 * 119.99920 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99943 * 179.97438 * 14 13 12 17 17 N 1.31518 * 120.00133 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99979 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47246 * 90.00124 * 18 16 14 20 20 H 1.48491 * 109.47306 * 210.00519 * 18 16 14 21 21 H 1.48507 * 109.46911 * 330.00285 * 18 16 14 22 22 C 1.53041 * 109.54061 * 61.23655 * 12 11 10 23 23 C 1.46926 * 120.62683 * 184.91250 * 9 7 6 24 24 H 1.08997 * 109.47524 * 336.72508 * 1 2 3 25 25 H 1.09000 * 109.47238 * 96.72792 * 1 2 3 26 26 H 1.09000 * 109.47206 * 216.72578 * 1 2 3 27 27 H 1.08996 * 109.47088 * 179.97438 * 3 2 1 28 28 H 1.08995 * 109.47176 * 300.00009 * 3 2 1 29 29 H 1.09002 * 109.46839 * 60.00372 * 3 2 1 30 30 H 1.09000 * 109.46947 * 273.43984 * 4 2 1 31 31 H 1.08999 * 109.46709 * 33.44100 * 4 2 1 32 32 H 1.08995 * 109.47203 * 153.44344 * 4 2 1 33 33 H 1.08003 * 119.99565 * 226.59367 * 5 2 1 34 34 H 1.08002 * 119.99668 * 187.22565 * 6 5 2 35 35 H 1.09004 * 109.58545 * 353.41138 * 10 9 7 36 36 H 1.08999 * 109.59461 * 113.83977 * 10 9 7 37 37 H 1.08998 * 109.56689 * 185.54473 * 11 10 9 38 38 H 1.09000 * 109.35698 * 65.49526 * 11 10 9 39 39 H 1.09004 * 109.45858 * 301.22015 * 12 11 10 40 40 H 1.09005 * 109.47024 * 184.93680 * 13 12 11 41 41 H 1.09000 * 109.47109 * 304.93273 * 13 12 11 42 42 H 0.96991 * 119.99910 * 179.97438 * 17 16 14 43 43 H 1.08997 * 109.49733 * 178.68420 * 22 12 11 44 44 H 1.08997 * 109.49647 * 58.58768 * 22 12 11 45 45 H 1.09000 * 109.58823 * 246.15839 * 23 9 7 46 46 H 1.08995 * 109.59088 * 6.44571 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0323 -0.7105 1.2305 6 6 1.5078 -1.8805 1.5834 7 6 0.5532 -2.5575 0.6922 8 8 0.3381 -2.1126 -0.4190 9 7 -0.0872 -3.6677 1.1092 10 6 0.0799 -4.1562 2.4847 11 6 0.5079 -5.6221 2.4434 12 6 -0.4963 -6.4212 1.6098 13 6 -0.0862 -7.8951 1.5935 14 6 -0.1843 -8.4594 2.9874 15 1 -0.5072 -7.8299 3.8033 16 6 0.1373 -9.7797 3.2209 17 7 0.5301 -10.5465 2.2273 18 14 0.0164 -10.4789 4.9489 19 1 -1.3451 -11.0307 5.1655 20 1 1.0210 -11.5594 5.1171 21 1 0.2772 -9.4022 5.9379 22 6 -0.5169 -5.8818 0.1778 23 6 -0.9610 -4.4157 0.1950 24 1 -0.3634 0.9440 0.4061 25 1 -0.3634 -0.1204 -1.0206 26 1 -0.3633 -0.8237 0.6145 27 1 3.1299 1.4425 0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 2.1030 -1.7911 -1.0508 31 1 1.3526 -0.5449 -2.0766 32 1 3.0277 -0.3414 -1.5103 33 1 2.8183 -0.2694 1.8256 34 1 1.7827 -2.3336 2.5245 35 1 0.8450 -3.5677 2.9910 36 1 -0.8652 -4.0694 3.0207 37 1 0.5393 -6.0219 3.4570 38 1 1.4970 -5.6971 1.9916 39 1 -1.4897 -6.3255 2.0482 40 1 -0.7496 -8.4495 0.9295 41 1 0.9403 -7.9827 1.2374 42 1 0.7567 -11.4751 2.3916 43 1 -1.2151 -6.4664 -0.4211 44 1 0.4818 -5.9543 -0.2527 45 1 -1.9927 -4.3504 0.5405 46 1 -0.8844 -3.9968 -0.8083 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493801088.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:31 Heat of formation + Delta-G solvation = -8.219453 kcal Electronic energy + Delta-G solvation = -22710.639614 eV Core-core repulsion = 19601.186466 eV Total energy + Delta-G solvation = -3109.453148 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.67849 -38.28189 -36.24330 -33.99453 -32.40404 -31.62644 -30.54259 -28.07152 -27.20665 -27.14786 -25.01433 -23.45289 -22.65824 -21.47284 -20.07293 -19.11332 -17.78258 -17.15384 -16.30080 -15.77914 -15.36736 -14.71129 -14.52224 -14.20579 -14.04256 -13.63744 -13.54536 -13.47196 -13.28048 -12.80263 -12.53034 -12.29102 -12.04282 -11.86171 -11.75556 -11.23152 -11.00759 -10.93973 -10.88731 -10.80752 -10.77342 -10.71443 -10.48121 -10.40634 -10.09747 -9.68339 -9.40113 -9.28113 -9.12173 -8.97343 -8.36817 -8.15444 -6.01312 -4.03450 1.39123 3.25597 3.29672 3.36555 3.38337 3.39405 4.43741 4.55967 4.64263 4.87187 5.05234 5.14602 5.32065 5.33832 5.40717 5.42787 5.51389 5.53868 5.58883 5.70319 5.71590 5.81546 5.85809 5.91248 5.94254 6.01572 6.06638 6.15488 6.18769 6.28549 6.37724 6.39417 6.44233 6.52616 6.54653 6.62059 6.76445 6.97480 7.00306 7.10667 7.65204 7.67095 7.80575 7.98526 8.38221 8.40782 9.03166 9.60423 11.09976 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.037805 B = 0.003407 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.471900 B = 8215.910355 C = 8505.604182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.040 4.040 3 C -0.141 4.141 4 C -0.115 4.115 5 C -0.057 4.057 6 C -0.221 4.221 7 C 0.532 3.468 8 O -0.528 6.528 9 N -0.601 5.601 10 C 0.102 3.898 11 C -0.120 4.120 12 C -0.080 4.080 13 C 0.028 3.972 14 C -0.516 4.516 15 H 0.056 0.944 16 C 0.056 3.944 17 N -0.895 5.895 18 Si 0.889 3.111 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.129 4.129 23 C 0.114 3.886 24 H 0.024 0.976 25 H 0.060 0.940 26 H 0.067 0.933 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.070 0.930 31 H 0.055 0.945 32 H 0.032 0.968 33 H 0.122 0.878 34 H 0.130 0.870 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.084 0.916 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.015 0.985 41 H 0.015 0.985 42 H 0.260 0.740 43 H 0.069 0.931 44 H 0.060 0.940 45 H 0.061 0.939 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.615 20.291 -2.109 20.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.040 4.040 3 C -0.199 4.199 4 C -0.172 4.172 5 C -0.077 4.077 6 C -0.241 4.241 7 C 0.324 3.676 8 O -0.408 6.408 9 N -0.334 5.334 10 C -0.020 4.020 11 C -0.158 4.158 12 C -0.099 4.099 13 C -0.009 4.009 14 C -0.555 4.555 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.535 5.535 18 Si 0.717 3.283 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.167 4.167 23 C -0.008 4.008 24 H 0.043 0.957 25 H 0.079 0.921 26 H 0.086 0.914 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.051 0.949 33 H 0.140 0.860 34 H 0.148 0.852 35 H 0.097 0.903 36 H 0.083 0.917 37 H 0.102 0.898 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.034 0.966 41 H 0.033 0.967 42 H 0.070 0.930 43 H 0.088 0.912 44 H 0.078 0.922 45 H 0.079 0.921 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.542 20.323 -2.730 20.564 hybrid contribution 0.048 -0.734 1.181 1.391 sum 1.590 19.589 -1.549 19.714 Atomic orbital electron populations 1.22258 0.92959 0.99321 1.02905 1.19673 0.96667 0.93952 0.93679 1.22003 1.00539 0.95675 1.01634 1.21898 0.98376 1.01528 0.95404 1.23845 0.94756 0.93735 0.95325 1.22739 1.01978 0.98253 1.01164 1.18389 0.81109 0.80587 0.87559 1.90887 1.64365 1.63547 1.22033 1.48088 1.46288 1.25896 1.13092 1.21899 1.01338 0.96869 0.81911 1.21834 0.99484 0.92005 1.02492 1.21180 0.98137 0.98277 0.92298 1.19125 0.96598 0.88254 0.96971 1.21238 1.44609 0.95352 0.94253 0.92605 1.25027 0.95438 0.97299 0.96731 1.69963 1.45752 1.06823 1.30946 0.86644 0.77763 0.78849 0.85028 1.20746 1.21314 1.19893 1.22024 1.01643 0.93822 0.99247 1.21626 0.92778 0.92183 0.94246 0.95720 0.92146 0.91432 0.92851 0.92496 0.92885 0.91073 0.92623 0.94901 0.86028 0.85224 0.90284 0.91682 0.89763 0.92335 0.92413 0.96640 0.96663 0.93041 0.91247 0.92161 0.92056 0.89719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.44 7.52 37.15 0.28 -1.16 16 2 C -0.04 -0.44 0.75 -155.66 -0.12 -0.55 16 3 C -0.14 -1.24 8.06 37.16 0.30 -0.94 16 4 C -0.12 -1.39 7.59 37.16 0.28 -1.11 16 5 C -0.06 -0.59 8.54 -36.12 -0.31 -0.90 16 6 C -0.22 -2.56 8.82 -37.81 -0.33 -2.89 16 7 C 0.53 7.50 5.64 -12.66 -0.07 7.43 16 8 O -0.53 -8.10 8.00 5.27 0.04 -8.06 16 9 N -0.60 -8.63 2.98 -174.43 -0.52 -9.15 16 10 C 0.10 1.39 6.32 -3.93 -0.02 1.36 16 11 C -0.12 -2.04 5.17 -26.84 -0.14 -2.18 16 12 C -0.08 -1.54 2.10 -90.58 -0.19 -1.73 16 13 C 0.03 0.68 4.45 -27.88 -0.12 0.56 16 14 C -0.52 -13.91 8.39 -34.44 -0.29 -14.20 16 15 H 0.06 1.44 7.06 -52.49 -0.37 1.07 16 16 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 17 N -0.90 -26.54 13.29 55.43 0.74 -25.80 16 18 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 22 C -0.13 -2.17 5.36 -26.61 -0.14 -2.31 16 23 C 0.11 1.68 6.42 -3.71 -0.02 1.66 16 24 H 0.02 0.27 7.73 -51.93 -0.40 -0.13 16 25 H 0.06 0.80 6.87 -51.93 -0.36 0.44 16 26 H 0.07 0.93 4.35 -52.00 -0.23 0.70 16 27 H 0.05 0.42 8.11 -51.93 -0.42 0.00 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.43 8.12 -51.93 -0.42 0.00 16 30 H 0.07 1.01 5.65 -51.93 -0.29 0.72 16 31 H 0.05 0.70 7.40 -51.93 -0.38 0.31 16 32 H 0.03 0.35 7.87 -51.93 -0.41 -0.06 16 33 H 0.12 0.96 8.01 -52.48 -0.42 0.54 16 34 H 0.13 1.29 5.92 -52.49 -0.31 0.98 16 35 H 0.08 0.89 5.32 -51.93 -0.28 0.62 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.08 1.52 6.91 -51.93 -0.36 1.16 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 43 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 44 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 45 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.08 1.26 7.03 -51.93 -0.37 0.90 16 LS Contribution 343.67 15.07 5.18 5.18 Total: -1.00 -29.48 343.67 -8.54 -38.02 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -7.96 Total: -0.83 kcal Atomic # 6 Polarization: -14.50 SS G_CDS: -1.00 Total: -15.50 kcal Atomic # 7 Polarization: -35.17 SS G_CDS: 0.22 Total: -34.95 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: 0.04 Total: -8.06 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.48 -8.54 -38.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493801088.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.797 kcal (2) G-P(sol) polarization free energy of solvation -29.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds