Wall clock time and date at job start Tue Mar 31 2020 01:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47175 * 2 1 4 4 C 1.53003 * 109.47219 * 240.00210 * 2 1 3 5 5 C 1.50705 * 109.47165 * 120.00190 * 2 1 3 6 6 C 1.32993 * 119.99989 * 46.59712 * 5 2 1 7 7 C 1.47098 * 119.99890 * 7.22020 * 6 5 2 8 8 O 1.21606 * 120.00371 * 6.85688 * 7 6 5 9 9 N 1.34782 * 119.99657 * 187.13154 * 7 6 5 10 10 C 1.46920 * 120.63265 * 4.64134 * 9 7 6 11 11 C 1.52763 * 109.00682 * 233.58120 * 10 9 7 12 12 C 1.53034 * 109.38472 * 305.58837 * 11 10 9 13 13 C 1.52997 * 109.45105 * 181.25309 * 12 11 10 14 14 C 1.50707 * 109.47179 * 64.93580 * 13 12 11 15 15 H 1.07995 * 119.99920 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99943 * 179.97438 * 14 13 12 17 17 N 1.31518 * 120.00133 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99979 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47246 * 90.00124 * 18 16 14 20 20 H 1.48491 * 109.47306 * 210.00519 * 18 16 14 21 21 H 1.48507 * 109.46911 * 330.00285 * 18 16 14 22 22 C 1.53041 * 109.54061 * 61.23655 * 12 11 10 23 23 C 1.46926 * 120.62683 * 184.91250 * 9 7 6 24 24 H 1.08997 * 109.47524 * 336.72508 * 1 2 3 25 25 H 1.09000 * 109.47238 * 96.72792 * 1 2 3 26 26 H 1.09000 * 109.47206 * 216.72578 * 1 2 3 27 27 H 1.08996 * 109.47088 * 179.97438 * 3 2 1 28 28 H 1.08995 * 109.47176 * 300.00009 * 3 2 1 29 29 H 1.09002 * 109.46839 * 60.00372 * 3 2 1 30 30 H 1.09000 * 109.46947 * 273.43984 * 4 2 1 31 31 H 1.08999 * 109.46709 * 33.44100 * 4 2 1 32 32 H 1.08995 * 109.47203 * 153.44344 * 4 2 1 33 33 H 1.08003 * 119.99565 * 226.59367 * 5 2 1 34 34 H 1.08002 * 119.99668 * 187.22565 * 6 5 2 35 35 H 1.09004 * 109.58545 * 353.41138 * 10 9 7 36 36 H 1.08999 * 109.59461 * 113.83977 * 10 9 7 37 37 H 1.08998 * 109.56689 * 185.54473 * 11 10 9 38 38 H 1.09000 * 109.35698 * 65.49526 * 11 10 9 39 39 H 1.09004 * 109.45858 * 301.22015 * 12 11 10 40 40 H 1.09005 * 109.47024 * 184.93680 * 13 12 11 41 41 H 1.09000 * 109.47109 * 304.93273 * 13 12 11 42 42 H 0.96991 * 119.99910 * 179.97438 * 17 16 14 43 43 H 1.08997 * 109.49733 * 178.68420 * 22 12 11 44 44 H 1.08997 * 109.49647 * 58.58768 * 22 12 11 45 45 H 1.09000 * 109.58823 * 246.15839 * 23 9 7 46 46 H 1.08995 * 109.59088 * 6.44571 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0323 -0.7105 1.2305 6 6 1.5078 -1.8805 1.5834 7 6 0.5532 -2.5575 0.6922 8 8 0.3381 -2.1126 -0.4190 9 7 -0.0872 -3.6677 1.1092 10 6 0.0799 -4.1562 2.4847 11 6 0.5079 -5.6221 2.4434 12 6 -0.4963 -6.4212 1.6098 13 6 -0.0862 -7.8951 1.5935 14 6 -0.1843 -8.4594 2.9874 15 1 -0.5072 -7.8299 3.8033 16 6 0.1373 -9.7797 3.2209 17 7 0.5301 -10.5465 2.2273 18 14 0.0164 -10.4789 4.9489 19 1 -1.3451 -11.0307 5.1655 20 1 1.0210 -11.5594 5.1171 21 1 0.2772 -9.4022 5.9379 22 6 -0.5169 -5.8818 0.1778 23 6 -0.9610 -4.4157 0.1950 24 1 -0.3634 0.9440 0.4061 25 1 -0.3634 -0.1204 -1.0206 26 1 -0.3633 -0.8237 0.6145 27 1 3.1299 1.4425 0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 2.1030 -1.7911 -1.0508 31 1 1.3526 -0.5449 -2.0766 32 1 3.0277 -0.3414 -1.5103 33 1 2.8183 -0.2694 1.8256 34 1 1.7827 -2.3336 2.5245 35 1 0.8450 -3.5677 2.9910 36 1 -0.8652 -4.0694 3.0207 37 1 0.5393 -6.0219 3.4570 38 1 1.4970 -5.6971 1.9916 39 1 -1.4897 -6.3255 2.0482 40 1 -0.7496 -8.4495 0.9295 41 1 0.9403 -7.9827 1.2374 42 1 0.7567 -11.4751 2.3916 43 1 -1.2151 -6.4664 -0.4211 44 1 0.4818 -5.9543 -0.2527 45 1 -1.9927 -4.3504 0.5405 46 1 -0.8844 -3.9968 -0.8083 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493801088.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:29 Heat of formation + Delta-G solvation = -23.147596 kcal Electronic energy + Delta-G solvation = -22711.286947 eV Core-core repulsion = 19601.186466 eV Total energy + Delta-G solvation = -3110.100481 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -41.72943 -39.49435 -37.32985 -35.60711 -34.06904 -32.80598 -31.70469 -29.78827 -28.11281 -28.01270 -26.58111 -24.74335 -24.00766 -22.84459 -21.32855 -20.37349 -18.87103 -18.40939 -18.11117 -16.86971 -16.53728 -16.41494 -15.68836 -15.36040 -15.05343 -14.90780 -14.81143 -14.57248 -14.40171 -14.29169 -14.03961 -13.48647 -13.24247 -13.06040 -12.94406 -12.72540 -12.61272 -12.50323 -12.29237 -12.08662 -11.88779 -11.80101 -11.75746 -11.64635 -11.41132 -11.27701 -11.02887 -10.82955 -10.52034 -10.31505 -10.17229 -9.32980 -8.15974 -6.25764 0.50889 1.42227 1.42844 1.53583 2.17120 2.38653 2.43364 3.17759 3.66024 3.76136 3.94755 4.04757 4.06879 4.19037 4.24537 4.25621 4.41800 4.48668 4.55580 4.69566 4.71260 4.82435 4.86452 4.87959 4.90607 4.94813 4.97986 5.05271 5.11412 5.23567 5.26128 5.28723 5.33283 5.33819 5.41874 5.42445 5.55492 5.55957 5.56414 5.65259 5.78997 5.84612 5.90015 6.29356 6.59324 6.91263 7.31753 7.43163 8.96125 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.037805 B = 0.003407 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.471900 B = 8215.910355 C = 8505.604182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.045 4.045 3 C -0.137 4.137 4 C -0.110 4.110 5 C -0.043 4.043 6 C -0.236 4.236 7 C 0.525 3.475 8 O -0.546 6.546 9 N -0.608 5.608 10 C 0.112 3.888 11 C -0.114 4.114 12 C -0.073 4.073 13 C 0.033 3.967 14 C -0.526 4.526 15 H 0.068 0.932 16 C -0.005 4.005 17 N -0.939 5.939 18 Si 0.961 3.039 19 H -0.276 1.276 20 H -0.288 1.288 21 H -0.257 1.257 22 C -0.121 4.121 23 C 0.123 3.877 24 H 0.036 0.964 25 H 0.041 0.959 26 H 0.052 0.948 27 H 0.066 0.934 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.046 0.954 31 H 0.042 0.958 32 H 0.047 0.953 33 H 0.155 0.845 34 H 0.150 0.850 35 H 0.109 0.891 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.044 0.956 39 H 0.061 0.939 40 H -0.016 1.016 41 H -0.016 1.016 42 H 0.261 0.739 43 H 0.068 0.932 44 H 0.044 0.956 45 H 0.074 0.926 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.985 22.670 0.017 22.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.045 4.045 3 C -0.194 4.194 4 C -0.167 4.167 5 C -0.063 4.063 6 C -0.256 4.256 7 C 0.318 3.682 8 O -0.428 6.428 9 N -0.340 5.340 10 C -0.010 4.010 11 C -0.152 4.152 12 C -0.092 4.092 13 C -0.004 4.004 14 C -0.564 4.564 15 H 0.086 0.914 16 C -0.202 4.202 17 N -0.580 5.580 18 Si 0.786 3.214 19 H -0.201 1.201 20 H -0.214 1.214 21 H -0.181 1.181 22 C -0.159 4.159 23 C 0.000 4.000 24 H 0.055 0.945 25 H 0.060 0.940 26 H 0.071 0.929 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.173 0.827 34 H 0.167 0.833 35 H 0.127 0.873 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.063 0.937 39 H 0.079 0.921 40 H 0.002 0.998 41 H 0.002 0.998 42 H 0.069 0.931 43 H 0.086 0.914 44 H 0.063 0.937 45 H 0.092 0.908 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.908 22.727 -0.597 22.815 hybrid contribution -0.062 -1.470 0.409 1.527 sum 1.846 21.257 -0.188 21.338 Atomic orbital electron populations 1.22170 0.94113 0.99252 1.01447 1.19730 0.95782 0.95514 0.93497 1.21961 1.01352 0.93860 1.02201 1.21814 0.98921 1.00192 0.95800 1.24148 0.94452 0.92984 0.94688 1.22801 1.02097 0.98949 1.01769 1.18907 0.81102 0.80406 0.87789 1.90892 1.64871 1.64020 1.22992 1.48162 1.46452 1.26161 1.13274 1.21874 1.02935 0.94364 0.81856 1.21714 0.98084 0.94361 1.01038 1.21030 0.98758 0.94983 0.94389 1.19022 0.94024 0.91886 0.95517 1.21672 1.43729 0.95708 0.95280 0.91403 1.25989 0.95143 0.97923 1.01110 1.70116 1.47177 1.07177 1.33492 0.85503 0.77742 0.78236 0.79923 1.20142 1.21365 1.18123 1.21901 1.00880 0.95604 0.97554 1.21459 0.93546 0.90331 0.94647 0.94538 0.94019 0.92899 0.91519 0.92606 0.91730 0.93461 0.93914 0.93451 0.82743 0.83276 0.87311 0.90343 0.90691 0.93682 0.92094 0.99786 0.99792 0.93063 0.91383 0.93694 0.90757 0.90021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.63 7.52 71.98 0.54 -2.09 16 2 C -0.05 -0.89 0.75 -52.93 -0.04 -0.93 16 3 C -0.14 -1.97 8.06 71.98 0.58 -1.38 16 4 C -0.11 -2.56 7.59 71.98 0.55 -2.02 16 5 C -0.04 -0.76 8.54 24.52 0.21 -0.55 16 6 C -0.24 -4.82 8.82 23.43 0.21 -4.62 16 7 C 0.52 14.13 5.64 86.57 0.49 14.62 16 8 O -0.55 -16.60 8.00 -4.05 -0.03 -16.64 16 9 N -0.61 -16.66 2.98 -824.02 -2.45 -19.11 16 10 C 0.11 2.77 6.32 86.22 0.55 3.32 16 11 C -0.11 -3.80 5.17 30.53 0.16 -3.64 16 12 C -0.07 -2.83 2.10 -10.77 -0.02 -2.86 16 13 C 0.03 1.68 4.45 29.85 0.13 1.81 16 14 C -0.53 -28.69 8.39 25.60 0.21 -28.48 16 15 H 0.07 3.46 7.06 -2.91 -0.02 3.44 16 16 C 0.00 -0.27 5.46 84.65 0.46 0.20 16 17 N -0.94 -57.22 13.29 21.45 0.28 -56.94 16 18 Si 0.96 43.40 29.54 68.60 2.03 45.42 16 19 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 20 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 21 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 22 C -0.12 -4.15 5.36 30.67 0.16 -3.99 16 23 C 0.12 3.56 6.42 86.36 0.55 4.12 16 24 H 0.04 0.73 7.73 -2.39 -0.02 0.72 16 25 H 0.04 1.10 6.87 -2.39 -0.02 1.08 16 26 H 0.05 1.38 4.35 -3.44 -0.01 1.37 16 27 H 0.07 0.80 8.11 -2.39 -0.02 0.78 16 28 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.06 0.80 8.12 -2.39 -0.02 0.78 16 30 H 0.05 1.33 5.65 -2.39 -0.01 1.31 16 31 H 0.04 1.07 7.40 -2.39 -0.02 1.06 16 32 H 0.05 0.93 7.87 -2.39 -0.02 0.91 16 33 H 0.16 1.70 8.01 -2.91 -0.02 1.68 16 34 H 0.15 2.40 5.92 -2.91 -0.02 2.38 16 35 H 0.11 2.08 5.32 -2.38 -0.01 2.07 16 36 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.07 2.64 6.91 -2.39 -0.02 2.62 16 38 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 40 H -0.02 -0.93 8.14 -2.38 -0.02 -0.95 16 41 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 42 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 43 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 44 H 0.04 1.65 8.14 -2.39 -0.02 1.64 16 45 H 0.07 1.97 8.14 -2.39 -0.02 1.96 16 46 H 0.08 2.44 7.03 -2.39 -0.02 2.42 16 Total: -1.00 -65.73 343.67 5.50 -60.23 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: 0.93 Total: 13.51 kcal Atomic # 6 Polarization: -31.22 SS G_CDS: 4.74 Total: -26.48 kcal Atomic # 7 Polarization: -73.88 SS G_CDS: -2.17 Total: -76.05 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: -0.03 Total: -16.64 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Total: -65.73 5.50 -60.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493801088.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.082 kcal (2) G-P(sol) polarization free energy of solvation -65.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds