Wall clock time and date at job start Tue Mar 31 2020 02:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53004 * 109.47419 * 2 1 4 4 C 1.53005 * 109.47561 * 239.99366 * 2 1 3 5 5 H 1.09006 * 109.46466 * 60.00142 * 4 2 1 6 6 C 1.52991 * 109.47269 * 179.97438 * 4 2 1 7 7 C 1.53005 * 109.47269 * 179.97438 * 6 4 2 8 8 C 1.52995 * 109.47112 * 300.00972 * 7 6 4 9 9 H 1.09006 * 109.46978 * 299.99102 * 8 7 6 10 10 C 1.50701 * 109.46904 * 179.97438 * 8 7 6 11 11 O 1.21299 * 119.99725 * 249.76340 * 10 8 7 12 12 N 1.34774 * 120.00160 * 69.76985 * 10 8 7 13 13 C 1.37098 * 119.99841 * 184.73053 * 12 10 8 14 14 H 1.07997 * 120.00027 * 331.99658 * 13 12 10 15 15 C 1.38949 * 120.00106 * 152.00631 * 13 12 10 16 16 N 1.31409 * 120.00047 * 348.22466 * 15 13 12 17 17 Si 1.86806 * 120.00063 * 168.22664 * 15 13 12 18 18 H 1.48497 * 109.46990 * 89.99724 * 17 15 13 19 19 H 1.48504 * 109.47077 * 210.00134 * 17 15 13 20 20 H 1.48500 * 109.46967 * 329.99798 * 17 15 13 21 21 C 1.46497 * 120.00119 * 4.72181 * 12 10 8 22 22 C 1.53006 * 117.49872 * 135.24831 * 21 12 10 23 23 C 1.52997 * 117.49877 * 66.62484 * 21 12 10 24 24 C 1.53001 * 109.47814 * 59.99365 * 8 7 6 25 25 C 1.52995 * 109.47112 * 300.00726 * 4 2 1 26 26 H 1.09004 * 109.47189 * 60.00643 * 1 2 3 27 27 H 1.09003 * 109.47449 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47552 * 300.00493 * 1 2 3 29 29 H 1.09006 * 109.47115 * 119.99906 * 2 1 3 30 30 H 1.09004 * 109.46415 * 299.99831 * 3 2 1 31 31 H 1.08995 * 109.46786 * 59.99270 * 3 2 1 32 32 H 1.08997 * 109.47288 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.47796 * 300.00323 * 6 4 2 34 34 H 1.09006 * 109.47060 * 60.00752 * 6 4 2 35 35 H 1.08998 * 109.47401 * 179.97438 * 7 6 4 36 36 H 1.09006 * 109.46466 * 60.00388 * 7 6 4 37 37 H 0.97001 * 120.00209 * 185.05531 * 16 15 13 38 38 H 1.09002 * 115.55191 * 280.95785 * 21 12 10 39 39 H 1.08998 * 117.49501 * 0.02562 * 22 21 12 40 40 H 1.08996 * 117.49473 * 145.02052 * 22 21 12 41 41 H 1.09002 * 117.50195 * 214.97465 * 23 21 12 42 42 H 1.09005 * 117.50020 * 0.02562 * 23 21 12 43 43 H 1.09000 * 109.47254 * 180.02562 * 24 8 7 44 44 H 1.09002 * 109.46572 * 59.99844 * 24 8 7 45 45 H 1.09006 * 109.46978 * 299.99102 * 25 4 2 46 46 H 1.08998 * 109.47856 * 59.99215 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2492 5 1 1.6767 -0.2075 -2.1392 6 6 3.5699 -0.7208 -1.2494 7 6 4.0801 -1.4427 -2.4983 8 6 3.5705 -2.8853 -2.4973 9 1 3.9342 -3.3985 -1.6070 10 6 4.0724 -3.5962 -3.7277 11 8 3.2981 -3.9010 -4.6102 12 7 5.3815 -3.8934 -3.8473 13 6 5.8544 -4.4520 -5.0066 14 1 5.2028 -5.0570 -5.6195 15 6 7.1722 -4.2401 -5.3928 16 7 7.8967 -3.3281 -4.7843 17 14 7.9140 -5.2514 -6.7772 18 1 7.6844 -4.5616 -8.0720 19 1 9.3735 -5.4057 -6.5504 20 1 7.2738 -6.5909 -6.8096 21 6 6.2992 -3.6193 -2.7388 22 6 7.3084 -4.7089 -2.3712 23 6 6.1164 -4.4291 -1.4536 24 6 2.0405 -2.8859 -2.4970 25 6 1.5299 -2.1638 -1.2491 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9563 -0.8901 31 1 1.6766 1.9563 0.8899 32 1 3.1300 1.4425 -0.0005 33 1 3.9330 0.3070 -1.2497 34 1 3.9336 -1.2344 -0.3594 35 1 5.1700 -1.4419 -2.4987 36 1 3.7164 -0.9295 -3.3885 37 1 8.7916 -3.1287 -5.1010 38 1 6.6192 -2.5821 -2.6388 39 1 7.2898 -5.6295 -2.9544 40 1 8.2926 -4.3887 -2.0294 41 1 6.3166 -3.9249 -0.5082 42 1 5.3136 -5.1662 -1.4331 43 1 1.6775 -3.9137 -2.4959 44 1 1.6769 -2.3727 -3.3873 45 1 1.8933 -2.6777 -0.3591 46 1 0.4400 -2.1639 -1.2491 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000509679802.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:46:53 Heat of formation + Delta-G solvation = -38.306506 kcal Electronic energy + Delta-G solvation = -23360.832260 eV Core-core repulsion = 20250.074440 eV Total energy + Delta-G solvation = -3110.757820 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.60504 -38.07814 -36.09535 -34.50527 -32.88123 -31.15514 -30.47538 -29.33753 -27.13666 -25.22181 -23.23534 -22.01608 -21.65585 -21.26315 -20.03796 -19.54159 -18.45773 -16.81743 -15.89626 -15.44218 -15.03493 -14.60501 -14.09792 -14.01519 -13.88808 -13.68983 -13.49212 -13.11318 -12.86358 -12.55443 -12.22048 -12.10931 -11.89844 -11.54201 -11.32599 -11.11808 -11.09043 -11.02963 -10.91418 -10.70449 -10.66501 -10.48636 -10.39102 -10.33485 -10.13327 -9.86295 -9.68962 -9.45134 -9.31507 -8.76934 -8.16394 -7.55620 -6.24245 -3.82210 3.19988 3.27836 3.32894 3.96674 4.17862 4.70377 4.75862 4.82948 4.87750 4.94179 5.12446 5.18490 5.39176 5.44463 5.56380 5.64030 5.66369 5.68881 5.79064 5.81209 5.83563 5.88560 5.90805 5.95648 5.98035 6.03124 6.07521 6.15580 6.19835 6.22519 6.29254 6.39670 6.42268 6.51034 6.56640 6.61695 6.64730 6.77559 6.84651 6.94298 6.98541 7.22177 7.64822 8.24896 8.58411 9.27169 9.51098 10.09133 10.82434 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.029105 B = 0.004564 C = 0.004389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.812672 B = 6133.264861 C = 6377.607232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.092 4.092 3 C -0.149 4.149 4 C -0.082 4.082 5 H 0.068 0.932 6 C -0.111 4.111 7 C -0.107 4.107 8 C -0.096 4.096 9 H 0.082 0.918 10 C 0.464 3.536 11 O -0.587 6.587 12 N -0.423 5.423 13 C -0.313 4.313 14 H 0.093 0.907 15 C 0.042 3.958 16 N -0.873 5.873 17 Si 0.916 3.084 18 H -0.278 1.278 19 H -0.283 1.283 20 H -0.271 1.271 21 C 0.135 3.865 22 C -0.140 4.140 23 C -0.226 4.226 24 C -0.096 4.096 25 C -0.113 4.113 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.048 0.952 29 H 0.067 0.933 30 H 0.052 0.948 31 H 0.048 0.952 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.266 0.734 38 H 0.104 0.896 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.059 0.941 44 H 0.065 0.935 45 H 0.057 0.943 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.619 6.080 11.525 14.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.110 4.110 3 C -0.206 4.206 4 C -0.101 4.101 5 H 0.086 0.914 6 C -0.148 4.148 7 C -0.145 4.145 8 C -0.118 4.118 9 H 0.100 0.900 10 C 0.253 3.747 11 O -0.472 6.472 12 N -0.142 5.142 13 C -0.441 4.441 14 H 0.111 0.889 15 C -0.162 4.162 16 N -0.511 5.511 17 Si 0.743 3.257 18 H -0.204 1.204 19 H -0.209 1.209 20 H -0.196 1.196 21 C 0.029 3.971 22 C -0.177 4.177 23 C -0.264 4.264 24 C -0.134 4.134 25 C -0.151 4.151 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.067 0.933 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.122 0.878 39 H 0.108 0.892 40 H 0.102 0.898 41 H 0.104 0.896 42 H 0.101 0.899 43 H 0.078 0.922 44 H 0.084 0.916 45 H 0.076 0.924 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.754 5.944 11.093 14.283 hybrid contribution 0.716 -0.426 -0.704 1.090 sum -6.038 5.518 10.389 13.223 Atomic orbital electron populations 1.21896 0.95679 1.01795 1.01231 1.21149 0.95392 0.96008 0.98497 1.21899 1.01382 0.96129 1.01225 1.21222 0.95675 0.95792 0.97372 0.91350 1.21629 0.94754 1.00084 0.98333 1.21476 1.01255 0.94102 0.97677 1.21183 0.96023 0.96507 0.98071 0.89964 1.20137 0.82957 0.83045 0.88583 1.90499 1.55233 1.57581 1.43843 1.43042 1.04919 1.54065 1.12166 1.19494 0.95538 1.29046 1.00006 0.88906 1.25233 0.96794 0.96336 0.97861 1.69861 1.11132 1.29880 1.40184 0.86086 0.78008 0.80409 0.81179 1.20437 1.20907 1.19565 1.21031 0.95045 0.95570 0.85410 1.22683 0.93049 1.01226 1.00786 1.23535 1.02303 1.05395 0.95161 1.21278 0.94257 1.00373 0.97453 1.21652 0.99849 0.95103 0.98451 0.92851 0.92352 0.93276 0.91462 0.92857 0.93270 0.92255 0.92007 0.92171 0.90958 0.92166 0.92420 0.87831 0.89223 0.89848 0.89623 0.89858 0.92188 0.91580 0.92391 0.92115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 8.84 37.15 0.33 -1.06 16 2 C -0.09 -0.94 2.51 -90.62 -0.23 -1.16 16 3 C -0.15 -1.41 8.84 37.16 0.33 -1.08 16 4 C -0.08 -1.00 1.78 -90.62 -0.16 -1.16 16 5 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 6 C -0.11 -1.46 4.85 -26.73 -0.13 -1.59 16 7 C -0.11 -1.82 5.07 -26.73 -0.14 -1.96 16 8 C -0.10 -1.80 1.80 -91.77 -0.17 -1.97 16 9 H 0.08 1.46 6.12 -51.93 -0.32 1.14 16 10 C 0.46 11.41 6.82 -10.99 -0.07 11.34 16 11 O -0.59 -16.55 15.71 5.54 0.09 -16.46 16 12 N -0.42 -10.75 2.91 -107.73 -0.31 -11.06 16 13 C -0.31 -8.74 8.75 -14.93 -0.13 -8.87 16 14 H 0.09 2.75 7.47 -52.49 -0.39 2.36 16 15 C 0.04 1.10 4.59 -17.47 -0.08 1.02 16 16 N -0.87 -22.86 10.85 55.50 0.60 -22.26 16 17 Si 0.92 20.87 29.57 -169.99 -5.03 15.84 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 21 C 0.13 2.96 2.72 -67.93 -0.18 2.77 16 22 C -0.14 -2.89 8.50 -26.73 -0.23 -3.12 16 23 C -0.23 -4.10 8.65 -26.73 -0.23 -4.33 16 24 C -0.10 -1.62 4.55 -26.76 -0.12 -1.74 16 25 C -0.11 -1.47 4.85 -26.76 -0.13 -1.60 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.54 6.43 -51.93 -0.33 0.21 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.57 6.43 -51.93 -0.33 0.23 16 33 H 0.06 0.75 6.43 -51.93 -0.33 0.42 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 1.31 5.70 -51.93 -0.30 1.02 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.27 6.66 8.32 -40.82 -0.34 6.32 16 38 H 0.10 2.32 6.60 -51.93 -0.34 1.98 16 39 H 0.09 2.01 7.77 -51.93 -0.40 1.61 16 40 H 0.08 1.62 8.14 -51.93 -0.42 1.19 16 41 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 42 H 0.08 1.54 8.03 -51.93 -0.42 1.13 16 43 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.07 1.22 7.99 -51.93 -0.41 0.80 16 45 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.06 0.72 6.43 -51.93 -0.33 0.39 16 LS Contribution 344.91 15.07 5.20 5.20 Total: -1.00 -29.48 344.91 -8.92 -38.41 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -8.13 Total: 4.86 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: -1.34 Total: -14.52 kcal Atomic # 7 Polarization: -33.61 SS G_CDS: 0.29 Total: -33.32 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: 0.09 Total: -16.46 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.03 Total: 15.84 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.48 -8.92 -38.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000509679802.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.099 kcal (2) G-P(sol) polarization free energy of solvation -29.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds