Wall clock time and date at job start Tue Mar 31 2020 02:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53004 * 109.47419 * 2 1 4 4 C 1.53005 * 109.47561 * 239.99366 * 2 1 3 5 5 H 1.09006 * 109.46466 * 60.00142 * 4 2 1 6 6 C 1.52991 * 109.47269 * 179.97438 * 4 2 1 7 7 C 1.53005 * 109.47269 * 179.97438 * 6 4 2 8 8 C 1.52995 * 109.47112 * 300.00972 * 7 6 4 9 9 H 1.09006 * 109.46978 * 299.99102 * 8 7 6 10 10 C 1.50701 * 109.46904 * 179.97438 * 8 7 6 11 11 O 1.21299 * 119.99725 * 249.76340 * 10 8 7 12 12 N 1.34774 * 120.00160 * 69.76985 * 10 8 7 13 13 C 1.37098 * 119.99841 * 184.73053 * 12 10 8 14 14 H 1.07997 * 120.00027 * 331.99658 * 13 12 10 15 15 C 1.38949 * 120.00106 * 152.00631 * 13 12 10 16 16 N 1.31409 * 120.00047 * 348.22466 * 15 13 12 17 17 Si 1.86806 * 120.00063 * 168.22664 * 15 13 12 18 18 H 1.48497 * 109.46990 * 89.99724 * 17 15 13 19 19 H 1.48504 * 109.47077 * 210.00134 * 17 15 13 20 20 H 1.48500 * 109.46967 * 329.99798 * 17 15 13 21 21 C 1.46497 * 120.00119 * 4.72181 * 12 10 8 22 22 C 1.53006 * 117.49872 * 135.24831 * 21 12 10 23 23 C 1.52997 * 117.49877 * 66.62484 * 21 12 10 24 24 C 1.53001 * 109.47814 * 59.99365 * 8 7 6 25 25 C 1.52995 * 109.47112 * 300.00726 * 4 2 1 26 26 H 1.09004 * 109.47189 * 60.00643 * 1 2 3 27 27 H 1.09003 * 109.47449 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47552 * 300.00493 * 1 2 3 29 29 H 1.09006 * 109.47115 * 119.99906 * 2 1 3 30 30 H 1.09004 * 109.46415 * 299.99831 * 3 2 1 31 31 H 1.08995 * 109.46786 * 59.99270 * 3 2 1 32 32 H 1.08997 * 109.47288 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.47796 * 300.00323 * 6 4 2 34 34 H 1.09006 * 109.47060 * 60.00752 * 6 4 2 35 35 H 1.08998 * 109.47401 * 179.97438 * 7 6 4 36 36 H 1.09006 * 109.46466 * 60.00388 * 7 6 4 37 37 H 0.97001 * 120.00209 * 185.05531 * 16 15 13 38 38 H 1.09002 * 115.55191 * 280.95785 * 21 12 10 39 39 H 1.08998 * 117.49501 * 0.02562 * 22 21 12 40 40 H 1.08996 * 117.49473 * 145.02052 * 22 21 12 41 41 H 1.09002 * 117.50195 * 214.97465 * 23 21 12 42 42 H 1.09005 * 117.50020 * 0.02562 * 23 21 12 43 43 H 1.09000 * 109.47254 * 180.02562 * 24 8 7 44 44 H 1.09002 * 109.46572 * 59.99844 * 24 8 7 45 45 H 1.09006 * 109.46978 * 299.99102 * 25 4 2 46 46 H 1.08998 * 109.47856 * 59.99215 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2492 5 1 1.6767 -0.2075 -2.1392 6 6 3.5699 -0.7208 -1.2494 7 6 4.0801 -1.4427 -2.4983 8 6 3.5705 -2.8853 -2.4973 9 1 3.9342 -3.3985 -1.6070 10 6 4.0724 -3.5962 -3.7277 11 8 3.2981 -3.9010 -4.6102 12 7 5.3815 -3.8934 -3.8473 13 6 5.8544 -4.4520 -5.0066 14 1 5.2028 -5.0570 -5.6195 15 6 7.1722 -4.2401 -5.3928 16 7 7.8967 -3.3281 -4.7843 17 14 7.9140 -5.2514 -6.7772 18 1 7.6844 -4.5616 -8.0720 19 1 9.3735 -5.4057 -6.5504 20 1 7.2738 -6.5909 -6.8096 21 6 6.2992 -3.6193 -2.7388 22 6 7.3084 -4.7089 -2.3712 23 6 6.1164 -4.4291 -1.4536 24 6 2.0405 -2.8859 -2.4970 25 6 1.5299 -2.1638 -1.2491 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9563 -0.8901 31 1 1.6766 1.9563 0.8899 32 1 3.1300 1.4425 -0.0005 33 1 3.9330 0.3070 -1.2497 34 1 3.9336 -1.2344 -0.3594 35 1 5.1700 -1.4419 -2.4987 36 1 3.7164 -0.9295 -3.3885 37 1 8.7916 -3.1287 -5.1010 38 1 6.6192 -2.5821 -2.6388 39 1 7.2898 -5.6295 -2.9544 40 1 8.2926 -4.3887 -2.0294 41 1 6.3166 -3.9249 -0.5082 42 1 5.3136 -5.1662 -1.4331 43 1 1.6775 -3.9137 -2.4959 44 1 1.6769 -2.3727 -3.3873 45 1 1.8933 -2.6777 -0.3591 46 1 0.4400 -2.1639 -1.2491 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000509679802.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:46:52 Heat of formation + Delta-G solvation = -53.186951 kcal Electronic energy + Delta-G solvation = -23361.477525 eV Core-core repulsion = 20250.074440 eV Total energy + Delta-G solvation = -3111.403085 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.17875 -39.44188 -37.88501 -35.72085 -34.78009 -33.06079 -31.74025 -30.58520 -27.90625 -27.12093 -24.64613 -23.28571 -23.16598 -22.92406 -21.34853 -20.51620 -20.15605 -18.75676 -17.64625 -16.97881 -16.61572 -16.15554 -15.79354 -15.26653 -15.11165 -14.96452 -14.85919 -14.43305 -14.17162 -13.88908 -13.69503 -13.29987 -13.16124 -12.96564 -12.91590 -12.51887 -12.48249 -12.40015 -12.26991 -12.14073 -12.10396 -11.92417 -11.89832 -11.62127 -11.42394 -11.21183 -11.07643 -10.90556 -10.70811 -10.57348 -10.06794 -9.55039 -8.27842 -5.94097 1.34743 1.38398 1.49168 2.06600 2.28456 2.98813 3.07037 3.23759 3.74893 3.81378 3.86048 4.11705 4.19425 4.23130 4.25283 4.36837 4.44561 4.51729 4.52580 4.62062 4.67204 4.73127 4.76756 4.81386 4.83547 4.92877 4.99123 5.09920 5.12102 5.14002 5.19822 5.22316 5.28081 5.33483 5.36235 5.40850 5.42804 5.45704 5.47039 5.52774 5.57938 5.66977 5.74232 6.16988 6.58600 7.23111 7.54285 8.12222 8.76043 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.029105 B = 0.004564 C = 0.004389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.812672 B = 6133.264861 C = 6377.607232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.086 4.086 3 C -0.149 4.149 4 C -0.080 4.080 5 H 0.055 0.945 6 C -0.101 4.101 7 C -0.101 4.101 8 C -0.083 4.083 9 H 0.100 0.900 10 C 0.445 3.555 11 O -0.639 6.639 12 N -0.432 5.432 13 C -0.353 4.353 14 H 0.059 0.941 15 C 0.018 3.982 16 N -0.878 5.878 17 Si 0.972 3.028 18 H -0.279 1.279 19 H -0.265 1.265 20 H -0.275 1.275 21 C 0.110 3.890 22 C -0.147 4.147 23 C -0.183 4.183 24 C -0.092 4.092 25 C -0.103 4.103 26 H 0.047 0.953 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.077 0.923 30 H 0.047 0.953 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.060 0.940 36 H 0.035 0.965 37 H 0.271 0.729 38 H 0.099 0.901 39 H 0.064 0.936 40 H 0.098 0.902 41 H 0.129 0.871 42 H 0.081 0.919 43 H 0.046 0.954 44 H 0.040 0.960 45 H 0.074 0.926 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.159 6.958 14.382 17.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.104 4.104 3 C -0.207 4.207 4 C -0.098 4.098 5 H 0.073 0.927 6 C -0.139 4.139 7 C -0.139 4.139 8 C -0.104 4.104 9 H 0.118 0.882 10 C 0.236 3.764 11 O -0.527 6.527 12 N -0.150 5.150 13 C -0.480 4.480 14 H 0.077 0.923 15 C -0.186 4.186 16 N -0.515 5.515 17 Si 0.797 3.203 18 H -0.205 1.205 19 H -0.190 1.190 20 H -0.200 1.200 21 C 0.006 3.994 22 C -0.184 4.184 23 C -0.221 4.221 24 C -0.131 4.131 25 C -0.140 4.140 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.096 0.904 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.078 0.922 36 H 0.054 0.946 37 H 0.081 0.919 38 H 0.116 0.884 39 H 0.083 0.917 40 H 0.116 0.884 41 H 0.147 0.853 42 H 0.099 0.901 43 H 0.065 0.935 44 H 0.059 0.941 45 H 0.093 0.907 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.268 6.838 13.984 16.781 hybrid contribution 0.595 -0.700 -1.662 1.899 sum -5.672 6.138 12.323 14.890 Atomic orbital electron populations 1.21899 0.95054 1.02008 1.01677 1.21093 0.95881 0.96145 0.97289 1.21903 1.01385 0.95714 1.01662 1.21196 0.94973 0.95376 0.98293 0.92667 1.21593 0.95347 1.00438 0.96472 1.21424 1.00408 0.93078 0.99010 1.21144 0.97005 0.96854 0.95374 0.88184 1.21275 0.82566 0.82531 0.90060 1.90447 1.56483 1.59555 1.46209 1.43246 1.05774 1.53438 1.12525 1.19376 0.96190 1.30648 1.01820 0.92301 1.25807 0.96293 0.96849 0.99674 1.69922 1.11275 1.29751 1.40510 0.85258 0.77923 0.78713 0.78430 1.20499 1.18980 1.20006 1.21076 0.96021 0.95785 0.86533 1.22645 0.94458 0.99614 1.01707 1.23578 1.00210 1.03323 0.95026 1.21254 0.93048 0.99989 0.98775 1.21605 1.00761 0.95168 0.96503 0.93344 0.92271 0.91968 0.90438 0.93370 0.91966 0.92244 0.90598 0.90389 0.92178 0.94599 0.91868 0.88360 0.91738 0.88411 0.85311 0.90081 0.93483 0.94124 0.90691 0.90607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 8.84 71.98 0.64 -1.70 16 2 C -0.09 -1.45 2.51 -10.79 -0.03 -1.48 16 3 C -0.15 -2.37 8.84 71.98 0.64 -1.73 16 4 C -0.08 -1.77 1.78 -10.80 -0.02 -1.79 16 5 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 6 C -0.10 -2.42 4.85 30.59 0.15 -2.27 16 7 C -0.10 -3.42 5.07 30.59 0.16 -3.26 16 8 C -0.08 -3.10 1.80 -11.54 -0.02 -3.12 16 9 H 0.10 3.37 6.12 -2.38 -0.01 3.36 16 10 C 0.45 22.88 6.82 87.66 0.60 23.48 16 11 O -0.64 -38.40 15.71 -3.09 -0.05 -38.45 16 12 N -0.43 -22.73 2.91 -613.13 -1.79 -24.51 16 13 C -0.35 -20.59 8.75 84.04 0.74 -19.86 16 14 H 0.06 3.75 7.47 -2.91 -0.02 3.73 16 15 C 0.02 0.95 4.59 84.93 0.39 1.34 16 16 N -0.88 -46.04 10.85 21.66 0.24 -45.81 16 17 Si 0.97 43.37 29.57 68.60 2.03 45.40 16 18 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 19 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 20 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 21 C 0.11 4.81 2.72 44.99 0.12 4.93 16 22 C -0.15 -5.92 8.50 30.60 0.26 -5.66 16 23 C -0.18 -6.22 8.65 30.59 0.26 -5.95 16 24 C -0.09 -3.17 4.55 30.58 0.14 -3.03 16 25 C -0.10 -2.47 4.85 30.58 0.15 -2.32 16 26 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 27 H 0.06 0.92 6.43 -2.39 -0.02 0.90 16 28 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 30 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.06 0.94 6.43 -2.39 -0.02 0.92 16 33 H 0.08 1.64 6.43 -2.39 -0.02 1.62 16 34 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 35 H 0.06 2.17 5.70 -2.39 -0.01 2.16 16 36 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 37 H 0.27 13.42 8.32 -92.71 -0.77 12.65 16 38 H 0.10 4.37 6.60 -2.39 -0.02 4.35 16 39 H 0.06 2.92 7.77 -2.39 -0.02 2.90 16 40 H 0.10 3.61 8.14 -2.39 -0.02 3.59 16 41 H 0.13 3.32 8.14 -2.39 -0.02 3.30 16 42 H 0.08 2.83 8.03 -2.38 -0.02 2.81 16 43 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.04 1.57 7.99 -2.39 -0.02 1.55 16 45 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 46 H 0.08 1.62 6.43 -2.39 -0.02 1.60 16 Total: -1.00 -67.67 344.91 5.53 -62.14 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: 0.93 Total: 23.66 kcal Atomic # 6 Polarization: -26.60 SS G_CDS: 4.17 Total: -22.43 kcal Atomic # 7 Polarization: -68.77 SS G_CDS: -1.55 Total: -70.32 kcal Atomic # 8 Polarization: -38.40 SS G_CDS: -0.05 Total: -38.45 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -67.67 5.53 -62.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000509679802.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.954 kcal (2) G-P(sol) polarization free energy of solvation -67.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds