Wall clock time and date at job start Tue Mar 31 2020 01:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50699 * 119.99615 * 2 1 4 4 C 1.50700 * 120.00647 * 179.97438 * 2 1 3 5 5 C 1.53002 * 109.46769 * 353.23710 * 4 2 1 6 6 C 1.52998 * 109.47242 * 113.23513 * 4 2 1 7 7 C 1.50706 * 109.47131 * 233.23768 * 4 2 1 8 8 O 1.21274 * 120.00016 * 235.36699 * 7 4 2 9 9 N 1.34783 * 119.99850 * 55.36875 * 7 4 2 10 10 C 1.46916 * 120.62702 * 183.68038 * 9 7 4 11 11 C 1.53632 * 108.54532 * 126.36612 * 10 9 7 12 12 C 1.53043 * 109.23655 * 54.85286 * 11 10 9 13 13 C 1.53003 * 109.45488 * 178.49188 * 12 11 10 14 14 C 1.50698 * 109.47056 * 295.06734 * 13 12 11 15 15 H 1.08001 * 120.00558 * 0.02562 * 14 13 12 16 16 C 1.37885 * 119.99772 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99863 * 179.97438 * 16 14 13 18 18 Si 1.86795 * 120.00047 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.47224 * 89.99854 * 18 16 14 20 20 H 1.48497 * 109.47151 * 209.99904 * 18 16 14 21 21 H 1.48501 * 109.47119 * 329.99783 * 18 16 14 22 22 C 1.53042 * 109.54039 * 298.51039 * 12 11 10 23 23 C 1.46929 * 120.62857 * 3.95509 * 9 7 4 24 24 H 1.08004 * 119.99396 * 179.97438 * 1 2 3 25 25 H 1.07996 * 120.00538 * 0.02562 * 1 2 3 26 26 H 1.08994 * 109.47500 * 269.99859 * 3 2 1 27 27 H 1.09000 * 109.47265 * 29.99908 * 3 2 1 28 28 H 1.09004 * 109.47632 * 149.99556 * 3 2 1 29 29 H 1.09003 * 109.47129 * 173.52264 * 5 4 2 30 30 H 1.09004 * 109.46878 * 293.51681 * 5 4 2 31 31 H 1.08996 * 109.46834 * 53.52052 * 5 4 2 32 32 H 1.09000 * 109.47219 * 304.95702 * 6 4 2 33 33 H 1.09001 * 109.46628 * 64.95639 * 6 4 2 34 34 H 1.09003 * 109.46937 * 184.94907 * 6 4 2 35 35 H 1.09002 * 109.58975 * 246.19785 * 10 9 7 36 36 H 1.09000 * 109.59105 * 6.62420 * 10 9 7 37 37 H 1.08990 * 109.63213 * 294.86689 * 11 10 9 38 38 H 1.08998 * 109.45703 * 174.73554 * 11 10 9 39 39 H 1.08998 * 109.45156 * 58.52857 * 12 11 10 40 40 H 1.08992 * 109.47192 * 55.06998 * 13 12 11 41 41 H 1.09005 * 109.46723 * 175.06782 * 13 12 11 42 42 H 0.96995 * 119.99772 * 180.02562 * 17 16 14 43 43 H 1.09001 * 109.49556 * 301.41862 * 22 12 11 44 44 H 1.08999 * 109.52361 * 181.33499 * 22 12 11 45 45 H 1.08993 * 109.59163 * 353.37963 * 23 9 7 46 46 H 1.08998 * 109.58164 * 113.65946 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.0636 -1.3050 0.0006 5 6 1.0781 -2.4629 0.1710 6 6 2.8115 -1.4627 -1.3248 7 6 3.0513 -1.3143 1.1389 8 8 4.2265 -1.5189 0.9204 9 7 2.6284 -1.0951 2.3997 10 6 3.5888 -1.0211 3.5091 11 6 3.3622 0.2974 4.2644 12 6 1.8964 0.3861 4.6954 13 6 1.6737 1.6801 5.4809 14 6 2.4655 1.6326 6.7622 15 1 3.0678 0.7663 6.9931 16 6 2.4211 2.6951 7.6399 17 7 3.1118 2.6534 8.7583 18 14 1.3789 4.1930 7.2410 19 1 0.0114 4.0047 7.7886 20 1 1.9937 5.4001 7.8493 21 1 1.3028 4.3652 5.7680 22 6 0.9974 0.3803 3.4569 23 6 1.1977 -0.9316 2.6917 24 1 -0.5399 -0.9354 -0.0004 25 1 -0.5401 0.9352 -0.0004 26 1 2.2451 1.6198 -1.0276 27 1 1.4743 2.0648 0.5138 28 1 3.0158 1.1750 0.5139 29 1 1.6064 -3.4095 0.0565 30 1 0.6293 -2.4150 1.1632 31 1 0.2967 -2.3891 -0.5853 32 1 2.1083 -1.3680 -2.1523 33 1 3.5744 -0.6884 -1.4058 34 1 3.2847 -2.4440 -1.3605 35 1 3.4336 -1.8631 4.1836 36 1 4.6048 -1.0482 3.1153 37 1 3.6015 1.1381 3.6134 38 1 4.0030 0.3257 5.1457 39 1 1.6512 -0.4683 5.3262 40 1 2.0019 2.5296 4.8822 41 1 0.6138 1.7866 5.7125 42 1 3.0802 3.4007 9.3759 43 1 1.2591 1.2204 2.8136 44 1 -0.0450 0.4674 3.7631 45 1 0.6356 -0.8998 1.7585 46 1 0.8509 -1.7678 3.2988 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000516652603.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:35 Heat of formation + Delta-G solvation = -27.730913 kcal Electronic energy + Delta-G solvation = -23537.216397 eV Core-core repulsion = 20426.917169 eV Total energy + Delta-G solvation = -3110.299228 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -40.89114 -37.66106 -36.99058 -34.00483 -32.19684 -31.96551 -30.72470 -28.63107 -28.57425 -26.29456 -25.06799 -23.65209 -22.59076 -21.40349 -20.11905 -19.14664 -17.94866 -16.72654 -16.54995 -16.02353 -15.67420 -14.62172 -14.38271 -14.33604 -14.07608 -13.75351 -13.40317 -13.17753 -12.98760 -12.90429 -12.76256 -12.52605 -12.35660 -12.28331 -12.02572 -11.89602 -11.60795 -11.48068 -11.18405 -11.13232 -10.85920 -10.82513 -10.64672 -10.34437 -9.81192 -9.78360 -9.70494 -9.52833 -9.10716 -8.81011 -8.53565 -8.35192 -6.04359 -4.01647 1.96899 2.72379 3.17210 3.29215 3.37297 3.40320 4.38033 4.44673 4.45432 4.63696 4.88363 5.01976 5.12522 5.28028 5.31889 5.33815 5.42024 5.43371 5.45267 5.54998 5.56607 5.63500 5.66797 5.69179 5.74410 5.81523 5.91229 5.93630 5.97275 6.05188 6.09390 6.28945 6.33550 6.40980 6.45553 6.58443 6.63368 6.84686 6.88524 7.02869 7.24124 7.43848 7.60377 7.79916 8.29899 8.53950 9.00689 9.58666 11.09021 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.026406 B = 0.004682 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.124185 B = 5978.688361 C = 6407.440909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.103 4.103 3 C -0.122 4.122 4 C -0.049 4.049 5 C -0.157 4.157 6 C -0.121 4.121 7 C 0.527 3.473 8 O -0.548 6.548 9 N -0.598 5.598 10 C 0.107 3.893 11 C -0.117 4.117 12 C -0.072 4.072 13 C -0.008 4.008 14 C -0.516 4.516 15 H 0.073 0.927 16 C 0.066 3.934 17 N -0.904 5.904 18 Si 0.878 3.122 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.266 1.266 22 C -0.130 4.130 23 C 0.083 3.917 24 H 0.107 0.893 25 H 0.104 0.896 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.085 0.915 37 H 0.056 0.944 38 H 0.088 0.912 39 H 0.063 0.937 40 H 0.014 0.986 41 H 0.010 0.990 42 H 0.262 0.738 43 H 0.062 0.938 44 H 0.068 0.932 45 H 0.104 0.896 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.644 -7.602 -19.276 21.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.103 4.103 3 C -0.178 4.178 4 C -0.052 4.052 5 C -0.214 4.214 6 C -0.178 4.178 7 C 0.314 3.686 8 O -0.426 6.426 9 N -0.330 5.330 10 C -0.015 4.015 11 C -0.155 4.155 12 C -0.091 4.091 13 C -0.045 4.045 14 C -0.554 4.554 15 H 0.091 0.909 16 C -0.135 4.135 17 N -0.543 5.543 18 Si 0.705 3.295 19 H -0.204 1.204 20 H -0.215 1.215 21 H -0.191 1.191 22 C -0.168 4.168 23 C -0.039 4.039 24 H 0.126 0.874 25 H 0.122 0.878 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.103 0.897 37 H 0.075 0.925 38 H 0.106 0.894 39 H 0.081 0.919 40 H 0.032 0.968 41 H 0.029 0.971 42 H 0.072 0.928 43 H 0.080 0.920 44 H 0.087 0.913 45 H 0.121 0.879 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.963 -7.606 -19.208 21.503 hybrid contribution -0.610 0.945 0.158 1.136 sum -6.573 -6.661 -19.050 21.224 Atomic orbital electron populations 1.23869 0.95011 1.02653 1.02208 1.21469 0.95166 0.94427 0.99278 1.20885 1.00617 0.94211 1.02109 1.19861 0.95446 0.94520 0.95406 1.22239 0.98818 0.96933 1.03363 1.21594 0.99598 1.03089 0.93528 1.20288 0.88767 0.76071 0.83460 1.90659 1.18105 1.49922 1.83921 1.48096 1.08100 1.69982 1.06802 1.21879 0.93230 0.98852 0.87530 1.21953 0.98357 0.95097 1.00069 1.21005 0.93296 1.00536 0.94236 1.19606 0.96393 0.92782 0.95761 1.21144 1.27948 1.04232 1.02026 0.90873 1.25029 0.95315 0.98310 0.94848 1.69914 1.41881 1.32000 1.10540 0.86811 0.80736 0.82874 0.79030 1.20395 1.21498 1.19120 1.22028 1.00505 0.96386 0.97890 1.22445 0.81139 0.98469 1.01892 0.87448 0.87804 0.91282 0.91208 0.91736 0.91719 0.90799 0.90909 0.92100 0.91739 0.91776 0.91805 0.89689 0.92524 0.89391 0.91884 0.96766 0.97135 0.92812 0.91970 0.91349 0.87877 0.91946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.73 11.60 29.01 0.34 -1.40 16 2 C -0.10 -1.06 3.29 -101.07 -0.33 -1.39 16 3 C -0.12 -1.33 9.75 36.01 0.35 -0.98 16 4 C -0.05 -0.55 0.62 -156.81 -0.10 -0.64 16 5 C -0.16 -1.40 7.09 37.16 0.26 -1.14 16 6 C -0.12 -1.27 7.65 37.16 0.28 -0.98 16 7 C 0.53 7.77 5.44 -10.98 -0.06 7.71 16 8 O -0.55 -9.88 15.40 5.56 0.09 -9.79 16 9 N -0.60 -8.69 2.96 -172.50 -0.51 -9.20 16 10 C 0.11 1.71 6.45 -3.49 -0.02 1.69 16 11 C -0.12 -2.12 5.21 -26.38 -0.14 -2.25 16 12 C -0.07 -1.34 2.10 -90.57 -0.19 -1.53 16 13 C -0.01 -0.19 3.52 -27.88 -0.10 -0.28 16 14 C -0.52 -14.19 8.94 -34.44 -0.31 -14.50 16 15 H 0.07 2.16 7.30 -52.49 -0.38 1.77 16 16 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 17 N -0.90 -27.62 13.96 55.43 0.77 -26.85 16 18 Si 0.88 21.53 27.47 -169.99 -4.67 16.86 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 22 C -0.13 -1.93 5.36 -26.61 -0.14 -2.07 16 23 C 0.08 1.05 4.36 -3.71 -0.02 1.03 16 24 H 0.11 0.78 5.62 -52.48 -0.30 0.48 16 25 H 0.10 0.83 8.04 -52.49 -0.42 0.41 16 26 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.07 0.74 8.06 -51.93 -0.42 0.32 16 28 H 0.06 0.85 7.17 -51.93 -0.37 0.48 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.66 5.09 -51.93 -0.26 0.39 16 31 H 0.07 0.51 6.75 -51.93 -0.35 0.16 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.75 7.96 -51.93 -0.41 0.33 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.08 1.42 7.03 -51.93 -0.36 1.06 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.09 1.78 6.91 -51.93 -0.36 1.42 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.01 0.33 7.20 -51.93 -0.37 -0.04 16 41 H 0.01 0.24 7.57 -51.93 -0.39 -0.16 16 42 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 43 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.10 1.10 1.86 -51.93 -0.10 1.00 16 46 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 343.64 15.07 5.18 5.18 Total: -1.00 -31.41 343.64 -7.31 -38.72 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -7.90 Total: 0.03 kcal Atomic # 6 Polarization: -14.68 SS G_CDS: -0.27 Total: -14.95 kcal Atomic # 7 Polarization: -36.31 SS G_CDS: 0.26 Total: -36.04 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.09 Total: -9.79 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.67 Total: 16.86 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.41 -7.31 -38.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516652603.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.986 kcal (2) G-P(sol) polarization free energy of solvation -31.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds