Wall clock time and date at job start Tue Mar 31 2020 02:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46757 * 2 1 4 4 C 1.52995 * 109.47110 * 120.00096 * 2 1 3 5 5 H 1.08992 * 115.55269 * 319.67384 * 4 2 1 6 6 C 1.53008 * 117.49613 * 174.00870 * 4 2 1 7 7 C 1.53001 * 117.51950 * 105.38213 * 4 2 1 8 8 H 1.08999 * 117.50400 * 214.96649 * 7 4 2 9 9 C 1.50701 * 117.49880 * 359.97438 * 7 4 2 10 10 O 1.21280 * 119.99754 * 324.61711 * 9 7 4 11 11 N 1.34770 * 120.00135 * 144.60922 * 9 7 4 12 12 C 1.46925 * 120.63582 * 359.72546 * 11 9 7 13 13 C 1.52759 * 109.01264 * 233.58461 * 12 11 9 14 14 C 1.53050 * 109.37883 * 305.58174 * 13 12 11 15 15 C 1.52996 * 109.44437 * 181.25213 * 14 13 12 16 16 C 1.50703 * 109.47112 * 64.94465 * 15 14 13 17 17 H 1.07995 * 119.99753 * 359.97438 * 16 15 14 18 18 C 1.37876 * 119.99714 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00524 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99753 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47033 * 59.99835 * 20 18 16 22 22 H 1.48498 * 109.47291 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47284 * 299.99980 * 20 18 16 24 24 C 1.53038 * 109.53534 * 61.24118 * 14 13 12 25 25 C 1.46934 * 120.62990 * 179.97438 * 11 9 7 26 26 H 1.09001 * 109.47247 * 302.07901 * 1 2 3 27 27 H 1.09002 * 109.47732 * 62.08211 * 1 2 3 28 28 H 1.09007 * 109.47356 * 182.08342 * 1 2 3 29 29 H 1.09001 * 109.47130 * 240.00081 * 2 1 3 30 30 H 1.09001 * 109.46770 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.46888 * 299.99925 * 3 2 1 32 32 H 1.08995 * 109.47195 * 60.00589 * 3 2 1 33 33 H 1.08997 * 117.50043 * 359.97438 * 6 4 2 34 34 H 1.08998 * 117.49613 * 144.97261 * 6 4 2 35 35 H 1.09004 * 109.57740 * 353.41496 * 12 11 9 36 36 H 1.09003 * 109.59091 * 113.83277 * 12 11 9 37 37 H 1.09000 * 109.56720 * 185.54920 * 13 12 11 38 38 H 1.08999 * 109.38969 * 65.50944 * 13 12 11 39 39 H 1.09003 * 109.45850 * 301.22112 * 14 13 12 40 40 H 1.09006 * 109.46897 * 184.93736 * 15 14 13 41 41 H 1.08997 * 109.47871 * 304.93582 * 15 14 13 42 42 H 0.96996 * 120.00029 * 180.02562 * 19 18 16 43 43 H 1.09001 * 109.49850 * 178.68654 * 24 14 13 44 44 H 1.08998 * 109.52791 * 58.60189 * 24 14 13 45 45 H 1.08997 * 109.58652 * 246.15966 * 25 11 9 46 46 H 1.08994 * 109.58862 * 6.44442 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.4899 -0.5167 2.1676 6 6 3.5481 -0.9520 1.3655 7 6 2.6149 -2.1275 1.0683 8 1 2.4431 -2.8483 1.8678 9 6 2.6352 -2.6969 -0.3268 10 8 1.7337 -2.4445 -1.0979 11 7 3.6551 -3.4863 -0.7178 12 6 4.7575 -3.7961 0.2028 13 6 6.0824 -3.4432 -0.4707 14 6 6.1715 -4.1575 -1.8214 15 6 7.5114 -3.8299 -2.4833 16 6 8.6338 -4.3996 -1.6545 17 1 8.4133 -4.9408 -0.7463 18 6 9.9419 -4.2299 -2.0558 19 7 10.2103 -3.5713 -3.1620 20 14 11.3331 -4.9355 -1.0281 21 1 11.1766 -6.4089 -0.9282 22 1 12.6335 -4.6187 -1.6712 23 1 11.2949 -4.3404 0.3319 24 6 5.0285 -3.6886 -2.7246 25 6 3.6885 -4.0493 -2.0746 26 1 -0.3634 0.5458 0.8708 27 1 -0.3635 0.4811 -0.9080 28 1 -0.3634 -1.0270 0.0374 29 1 1.8933 -0.5138 -0.8900 30 1 3.1299 1.4426 -0.0005 31 1 1.6765 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 4.1768 -0.5903 0.5519 34 1 3.9900 -0.8989 2.3604 35 1 4.6462 -3.2112 1.1159 36 1 4.7448 -4.8592 0.4436 37 1 6.9102 -3.7601 0.1637 38 1 6.1341 -2.3654 -0.6250 39 1 6.0955 -5.2340 -1.6686 40 1 7.5396 -4.2661 -3.4819 41 1 7.6262 -2.7484 -2.5559 42 1 11.1305 -3.4522 -3.4445 43 1 5.1061 -4.1802 -3.6944 44 1 5.0893 -2.6086 -2.8582 45 1 3.5871 -5.1333 -2.0230 46 1 2.8708 -3.6334 -2.6630 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000517150279.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:25 Heat of formation + Delta-G solvation = -41.327354 kcal Electronic energy + Delta-G solvation = -22716.383976 eV Core-core repulsion = 19605.495162 eV Total energy + Delta-G solvation = -3110.888814 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.45743 -38.11712 -36.71268 -34.10394 -33.36034 -32.05853 -30.75685 -28.11851 -27.14237 -25.31138 -23.68963 -23.11410 -22.73161 -21.49800 -20.25940 -19.46925 -18.31199 -16.90362 -16.30549 -15.81035 -15.70653 -14.64287 -14.51821 -14.34728 -13.98834 -13.68282 -13.49055 -13.21677 -12.92698 -12.84116 -12.71066 -12.28618 -12.24059 -12.12042 -11.81646 -11.28181 -11.20408 -11.18669 -11.00238 -10.78705 -10.70369 -10.69796 -10.47381 -10.23193 -10.14176 -10.01455 -9.69796 -9.40648 -9.25611 -8.98947 -8.37196 -8.30263 -6.01448 -4.03731 2.69484 3.10938 3.30477 3.35940 3.37241 3.65092 4.43003 4.43508 4.61093 4.71523 4.94300 5.09731 5.19430 5.29806 5.33578 5.35678 5.40436 5.50389 5.54290 5.56687 5.63954 5.66724 5.70423 5.78794 5.84436 5.86910 5.89223 6.00552 6.04205 6.08116 6.17636 6.35480 6.37432 6.39752 6.50071 6.54736 6.70082 6.96054 6.98719 7.09865 7.61071 7.65058 7.79863 7.98113 8.33299 8.40345 9.02610 9.60116 11.09769 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.025854 B = 0.003788 C = 0.003664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.753747 B = 7389.895596 C = 7639.968276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.080 4.080 3 C -0.144 4.144 4 C -0.112 4.112 5 H 0.107 0.893 6 C -0.158 4.158 7 C -0.183 4.183 8 H 0.125 0.875 9 C 0.543 3.457 10 O -0.542 6.542 11 N -0.600 5.600 12 C 0.104 3.896 13 C -0.118 4.118 14 C -0.081 4.081 15 C 0.028 3.972 16 C -0.517 4.517 17 H 0.055 0.945 18 C 0.057 3.943 19 N -0.895 5.895 20 Si 0.889 3.111 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 C -0.129 4.129 25 C 0.111 3.889 26 H 0.045 0.955 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.096 0.904 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.100 0.900 34 H 0.103 0.897 35 H 0.081 0.919 36 H 0.064 0.936 37 H 0.084 0.916 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.015 0.985 41 H 0.015 0.985 42 H 0.261 0.739 43 H 0.069 0.931 44 H 0.060 0.940 45 H 0.063 0.937 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.712 4.617 9.094 18.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.098 4.098 3 C -0.202 4.202 4 C -0.130 4.130 5 H 0.125 0.875 6 C -0.196 4.196 7 C -0.204 4.204 8 H 0.143 0.857 9 C 0.331 3.669 10 O -0.420 6.420 11 N -0.333 5.333 12 C -0.018 4.018 13 C -0.156 4.156 14 C -0.099 4.099 15 C -0.009 4.009 16 C -0.556 4.556 17 H 0.073 0.927 18 C -0.144 4.144 19 N -0.535 5.535 20 Si 0.717 3.283 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.203 1.203 24 C -0.167 4.167 25 C -0.011 4.011 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.114 0.886 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.099 0.901 36 H 0.082 0.918 37 H 0.103 0.897 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.034 0.966 41 H 0.033 0.967 42 H 0.070 0.930 43 H 0.088 0.912 44 H 0.078 0.922 45 H 0.081 0.919 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -16.032 4.797 8.564 18.798 hybrid contribution 1.080 -0.528 0.630 1.357 sum -14.952 4.269 9.193 18.064 Atomic orbital electron populations 1.21653 0.94974 1.01757 1.00617 1.20961 0.96147 0.95266 0.97474 1.21822 1.01002 0.96121 1.01239 1.22410 0.95577 0.94930 1.00102 0.87480 1.23099 0.93287 0.99638 1.03548 1.22217 1.08583 0.93146 0.96481 0.85692 1.19648 0.81419 0.77934 0.87930 1.90617 1.36937 1.59506 1.54978 1.48159 1.22076 1.48709 1.14325 1.21844 0.86970 1.00599 0.92392 1.21813 0.95018 1.00728 0.98064 1.21192 0.96282 0.98646 0.93818 1.19117 0.89349 0.96852 0.95582 1.21197 0.91036 1.34767 1.08550 0.92658 1.25019 0.98916 0.95377 0.95111 1.69951 1.19444 1.41436 1.22641 0.86709 0.81568 0.79555 0.80457 1.20304 1.21366 1.20270 1.22024 0.93846 1.01545 0.99260 1.21677 0.99252 0.97779 0.82371 0.93638 0.93118 0.92355 0.88630 0.92788 0.92888 0.93078 0.88137 0.87887 0.90116 0.91787 0.89736 0.92372 0.92389 0.96636 0.96671 0.92977 0.91192 0.92160 0.91908 0.89725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.45 9.19 37.16 0.34 -1.11 16 2 C -0.08 -0.94 2.33 -90.62 -0.21 -1.15 16 3 C -0.14 -1.48 9.09 37.16 0.34 -1.15 16 4 C -0.11 -1.17 5.06 -90.62 -0.46 -1.63 16 5 H 0.11 0.96 8.14 -51.93 -0.42 0.53 16 6 C -0.16 -1.62 8.66 -26.73 -0.23 -1.85 16 7 C -0.18 -2.08 4.51 -91.77 -0.41 -2.49 16 8 H 0.13 1.20 8.14 -51.93 -0.42 0.78 16 9 C 0.54 7.90 6.81 -10.99 -0.07 7.83 16 10 O -0.54 -9.25 13.60 5.56 0.08 -9.18 16 11 N -0.60 -8.70 2.98 -173.00 -0.52 -9.22 16 12 C 0.10 1.41 6.30 -3.93 -0.02 1.39 16 13 C -0.12 -1.99 5.17 -26.83 -0.14 -2.13 16 14 C -0.08 -1.54 2.10 -90.58 -0.19 -1.73 16 15 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 16 C -0.52 -13.88 8.39 -34.44 -0.29 -14.17 16 17 H 0.06 1.42 7.05 -52.49 -0.37 1.05 16 18 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 19 N -0.90 -26.44 13.29 55.43 0.74 -25.71 16 20 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 C -0.13 -2.16 5.36 -26.59 -0.14 -2.30 16 25 C 0.11 1.67 6.44 -3.68 -0.02 1.64 16 26 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 29 H 0.10 1.41 5.17 -51.93 -0.27 1.14 16 30 H 0.05 0.56 7.72 -51.93 -0.40 0.16 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.10 1.17 7.99 -51.93 -0.42 0.76 16 34 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.08 0.93 5.63 -51.93 -0.29 0.63 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.08 1.52 6.91 -51.93 -0.36 1.16 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 43 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 44 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 45 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 46 H 0.08 1.30 7.00 -51.93 -0.36 0.94 16 LS Contribution 356.09 15.07 5.37 5.37 Total: -1.00 -29.95 356.09 -9.47 -39.42 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -8.37 Total: 0.06 kcal Atomic # 6 Polarization: -15.06 SS G_CDS: -1.74 Total: -16.80 kcal Atomic # 7 Polarization: -35.15 SS G_CDS: 0.22 Total: -34.93 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: 0.08 Total: -9.18 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.95 -9.47 -39.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517150279.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.907 kcal (2) G-P(sol) polarization free energy of solvation -29.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds