Wall clock time and date at job start Tue Mar 31 2020 02:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46757 * 2 1 4 4 C 1.52995 * 109.47110 * 120.00096 * 2 1 3 5 5 H 1.08992 * 115.55269 * 319.67384 * 4 2 1 6 6 C 1.53008 * 117.49613 * 174.00870 * 4 2 1 7 7 C 1.53001 * 117.51950 * 105.38213 * 4 2 1 8 8 H 1.08999 * 117.50400 * 214.96649 * 7 4 2 9 9 C 1.50701 * 117.49880 * 359.97438 * 7 4 2 10 10 O 1.21280 * 119.99754 * 324.61711 * 9 7 4 11 11 N 1.34770 * 120.00135 * 144.60922 * 9 7 4 12 12 C 1.46925 * 120.63582 * 359.72546 * 11 9 7 13 13 C 1.52759 * 109.01264 * 233.58461 * 12 11 9 14 14 C 1.53050 * 109.37883 * 305.58174 * 13 12 11 15 15 C 1.52996 * 109.44437 * 181.25213 * 14 13 12 16 16 C 1.50703 * 109.47112 * 64.94465 * 15 14 13 17 17 H 1.07995 * 119.99753 * 359.97438 * 16 15 14 18 18 C 1.37876 * 119.99714 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00524 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99753 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47033 * 59.99835 * 20 18 16 22 22 H 1.48498 * 109.47291 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47284 * 299.99980 * 20 18 16 24 24 C 1.53038 * 109.53534 * 61.24118 * 14 13 12 25 25 C 1.46934 * 120.62990 * 179.97438 * 11 9 7 26 26 H 1.09001 * 109.47247 * 302.07901 * 1 2 3 27 27 H 1.09002 * 109.47732 * 62.08211 * 1 2 3 28 28 H 1.09007 * 109.47356 * 182.08342 * 1 2 3 29 29 H 1.09001 * 109.47130 * 240.00081 * 2 1 3 30 30 H 1.09001 * 109.46770 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.46888 * 299.99925 * 3 2 1 32 32 H 1.08995 * 109.47195 * 60.00589 * 3 2 1 33 33 H 1.08997 * 117.50043 * 359.97438 * 6 4 2 34 34 H 1.08998 * 117.49613 * 144.97261 * 6 4 2 35 35 H 1.09004 * 109.57740 * 353.41496 * 12 11 9 36 36 H 1.09003 * 109.59091 * 113.83277 * 12 11 9 37 37 H 1.09000 * 109.56720 * 185.54920 * 13 12 11 38 38 H 1.08999 * 109.38969 * 65.50944 * 13 12 11 39 39 H 1.09003 * 109.45850 * 301.22112 * 14 13 12 40 40 H 1.09006 * 109.46897 * 184.93736 * 15 14 13 41 41 H 1.08997 * 109.47871 * 304.93582 * 15 14 13 42 42 H 0.96996 * 120.00029 * 180.02562 * 19 18 16 43 43 H 1.09001 * 109.49850 * 178.68654 * 24 14 13 44 44 H 1.08998 * 109.52791 * 58.60189 * 24 14 13 45 45 H 1.08997 * 109.58652 * 246.15966 * 25 11 9 46 46 H 1.08994 * 109.58862 * 6.44442 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.4899 -0.5167 2.1676 6 6 3.5481 -0.9520 1.3655 7 6 2.6149 -2.1275 1.0683 8 1 2.4431 -2.8483 1.8678 9 6 2.6352 -2.6969 -0.3268 10 8 1.7337 -2.4445 -1.0979 11 7 3.6551 -3.4863 -0.7178 12 6 4.7575 -3.7961 0.2028 13 6 6.0824 -3.4432 -0.4707 14 6 6.1715 -4.1575 -1.8214 15 6 7.5114 -3.8299 -2.4833 16 6 8.6338 -4.3996 -1.6545 17 1 8.4133 -4.9408 -0.7463 18 6 9.9419 -4.2299 -2.0558 19 7 10.2103 -3.5713 -3.1620 20 14 11.3331 -4.9355 -1.0281 21 1 11.1766 -6.4089 -0.9282 22 1 12.6335 -4.6187 -1.6712 23 1 11.2949 -4.3404 0.3319 24 6 5.0285 -3.6886 -2.7246 25 6 3.6885 -4.0493 -2.0746 26 1 -0.3634 0.5458 0.8708 27 1 -0.3635 0.4811 -0.9080 28 1 -0.3634 -1.0270 0.0374 29 1 1.8933 -0.5138 -0.8900 30 1 3.1299 1.4426 -0.0005 31 1 1.6765 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 4.1768 -0.5903 0.5519 34 1 3.9900 -0.8989 2.3604 35 1 4.6462 -3.2112 1.1159 36 1 4.7448 -4.8592 0.4436 37 1 6.9102 -3.7601 0.1637 38 1 6.1341 -2.3654 -0.6250 39 1 6.0955 -5.2340 -1.6686 40 1 7.5396 -4.2661 -3.4819 41 1 7.6262 -2.7484 -2.5559 42 1 11.1305 -3.4522 -3.4445 43 1 5.1061 -4.1802 -3.6944 44 1 5.0893 -2.6086 -2.8582 45 1 3.5871 -5.1333 -2.0230 46 1 2.8708 -3.6334 -2.6630 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000517150279.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:24 Heat of formation + Delta-G solvation = -56.314576 kcal Electronic energy + Delta-G solvation = -22717.033871 eV Core-core repulsion = 19605.495162 eV Total energy + Delta-G solvation = -3111.538709 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.54921 -39.29496 -37.86059 -35.70036 -34.46017 -33.75985 -32.04520 -29.85715 -27.98247 -26.80548 -25.08027 -24.11904 -23.88884 -22.95655 -21.41488 -20.68910 -19.51057 -18.40574 -17.95359 -16.83273 -16.78457 -16.52640 -15.71162 -15.41934 -15.16932 -14.89575 -14.84587 -14.50004 -14.19566 -14.04840 -13.92170 -13.78331 -13.36332 -13.14475 -12.98031 -12.94480 -12.72457 -12.48145 -12.33496 -12.14327 -12.06415 -12.04994 -11.78437 -11.58238 -11.35120 -11.15258 -10.99888 -10.85666 -10.84099 -10.52598 -10.48538 -9.54494 -8.15315 -6.25252 1.42736 1.45099 1.52561 1.60137 2.02820 2.43859 2.79741 3.18396 3.48797 3.72590 3.88634 3.96919 4.01344 4.05182 4.17597 4.23092 4.29997 4.41830 4.46400 4.51017 4.59465 4.68164 4.76264 4.83377 4.84613 4.88548 4.90856 4.98103 4.99291 5.04146 5.06149 5.11325 5.22263 5.31151 5.33653 5.34356 5.41306 5.50002 5.55031 5.59908 5.66136 5.82267 5.89903 6.29392 6.49069 6.91495 7.21236 7.43727 8.96566 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.025854 B = 0.003788 C = 0.003664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.753747 B = 7389.895596 C = 7639.968276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.084 4.084 3 C -0.141 4.141 4 C -0.110 4.110 5 H 0.132 0.868 6 C -0.150 4.150 7 C -0.189 4.189 8 H 0.152 0.848 9 C 0.536 3.464 10 O -0.572 6.572 11 N -0.605 5.605 12 C 0.114 3.886 13 C -0.112 4.112 14 C -0.073 4.073 15 C 0.033 3.967 16 C -0.527 4.527 17 H 0.068 0.932 18 C -0.004 4.004 19 N -0.939 5.939 20 Si 0.961 3.039 21 H -0.267 1.267 22 H -0.290 1.290 23 H -0.263 1.263 24 C -0.121 4.121 25 C 0.118 3.882 26 H 0.066 0.934 27 H 0.045 0.955 28 H 0.043 0.957 29 H 0.060 0.940 30 H 0.047 0.953 31 H 0.049 0.951 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.131 0.869 35 H 0.108 0.892 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.044 0.956 39 H 0.062 0.938 40 H -0.016 1.016 41 H -0.017 1.017 42 H 0.261 0.739 43 H 0.069 0.931 44 H 0.043 0.957 45 H 0.080 0.920 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.375 4.104 12.303 20.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.103 4.103 3 C -0.198 4.198 4 C -0.128 4.128 5 H 0.150 0.850 6 C -0.187 4.187 7 C -0.210 4.210 8 H 0.169 0.831 9 C 0.326 3.674 10 O -0.452 6.452 11 N -0.337 5.337 12 C -0.008 4.008 13 C -0.150 4.150 14 C -0.092 4.092 15 C -0.004 4.004 16 C -0.565 4.565 17 H 0.087 0.913 18 C -0.201 4.201 19 N -0.579 5.579 20 Si 0.786 3.214 21 H -0.192 1.192 22 H -0.216 1.216 23 H -0.188 1.188 24 C -0.159 4.159 25 C -0.004 4.004 26 H 0.085 0.915 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.149 0.851 35 H 0.127 0.873 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.062 0.938 39 H 0.081 0.919 40 H 0.002 0.998 41 H 0.002 0.998 42 H 0.069 0.931 43 H 0.087 0.913 44 H 0.062 0.938 45 H 0.098 0.902 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -16.705 4.278 11.791 20.890 hybrid contribution 1.270 -0.323 -0.473 1.394 sum -15.435 3.955 11.318 19.544 Atomic orbital electron populations 1.21607 0.94454 1.01068 1.01414 1.20915 0.96640 0.95863 0.96850 1.21782 1.00598 0.95406 1.02000 1.22506 0.96022 0.94019 1.00237 0.84979 1.23145 0.92963 0.98358 1.04211 1.22289 1.09838 0.94007 0.94867 0.83055 1.20278 0.80755 0.77230 0.89124 1.90610 1.38116 1.60268 1.56255 1.48253 1.22497 1.48804 1.14104 1.21831 0.84324 1.02121 0.92493 1.21692 0.97144 0.99467 0.96692 1.21040 0.93793 0.99199 0.95137 1.19013 0.92548 0.94368 0.94481 1.21639 0.91674 1.34258 1.08921 0.91343 1.25979 1.02004 0.95788 0.96291 1.70111 1.19961 1.43177 1.24694 0.85564 0.77709 0.79146 0.79026 1.19200 1.21583 1.18799 1.21900 0.94466 1.00348 0.99174 1.21538 0.97295 0.98734 0.82862 0.91488 0.93570 0.93824 0.92195 0.93361 0.93186 0.91256 0.90173 0.85106 0.87341 0.90082 0.90511 0.93757 0.91917 0.99789 0.99827 0.93070 0.91255 0.93836 0.90225 0.90318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.65 9.19 71.98 0.66 -1.99 16 2 C -0.08 -1.89 2.33 -10.79 -0.03 -1.92 16 3 C -0.14 -2.72 9.09 71.98 0.65 -2.07 16 4 C -0.11 -2.01 5.06 -10.79 -0.05 -2.06 16 5 H 0.13 1.81 8.14 -2.39 -0.02 1.79 16 6 C -0.15 -2.64 8.66 30.60 0.26 -2.37 16 7 C -0.19 -3.76 4.51 -11.54 -0.05 -3.82 16 8 H 0.15 2.24 8.14 -2.39 -0.02 2.22 16 9 C 0.54 14.98 6.81 87.66 0.60 15.58 16 10 O -0.57 -19.55 13.60 -3.03 -0.04 -19.59 16 11 N -0.60 -16.70 2.98 -819.65 -2.44 -19.14 16 12 C 0.11 2.80 6.30 86.22 0.54 3.34 16 13 C -0.11 -3.69 5.17 30.53 0.16 -3.53 16 14 C -0.07 -2.81 2.10 -10.77 -0.02 -2.84 16 15 C 0.03 1.69 4.45 29.85 0.13 1.82 16 16 C -0.53 -28.55 8.39 25.60 0.21 -28.33 16 17 H 0.07 3.45 7.05 -2.91 -0.02 3.43 16 18 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 19 N -0.94 -56.99 13.29 21.45 0.28 -56.70 16 20 Si 0.96 43.10 29.54 68.60 2.03 45.13 16 21 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 22 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 23 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 24 C -0.12 -4.15 5.36 30.69 0.16 -3.99 16 25 C 0.12 3.48 6.44 86.38 0.56 4.03 16 26 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.04 1.02 8.14 -2.38 -0.02 1.00 16 29 H 0.06 1.80 5.17 -2.39 -0.01 1.79 16 30 H 0.05 0.97 7.72 -2.39 -0.02 0.95 16 31 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.08 1.78 7.99 -2.39 -0.02 1.76 16 34 H 0.13 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.11 2.09 5.63 -2.38 -0.01 2.08 16 36 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.08 2.66 6.91 -2.39 -0.02 2.64 16 38 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 40 H -0.02 -0.92 8.14 -2.38 -0.02 -0.94 16 41 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 42 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 43 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 44 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 45 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 46 H 0.08 2.44 7.00 -2.39 -0.02 2.42 16 Total: -1.00 -67.04 356.09 5.01 -62.04 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: 0.92 Total: 16.15 kcal Atomic # 6 Polarization: -32.13 SS G_CDS: 4.25 Total: -27.88 kcal Atomic # 7 Polarization: -73.68 SS G_CDS: -2.16 Total: -75.84 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -0.04 Total: -19.59 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -67.04 5.01 -62.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517150279.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.721 kcal (2) G-P(sol) polarization free energy of solvation -67.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds