Wall clock time and date at job start Tue Mar 31 2020 02:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47067 * 2 1 4 4 C 1.52997 * 109.47303 * 119.99850 * 2 1 3 5 5 H 1.09003 * 115.54757 * 325.67140 * 4 2 1 6 6 C 1.53070 * 117.51434 * 111.38920 * 4 2 1 7 7 C 1.52997 * 117.50307 * 180.02562 * 4 2 1 8 8 H 1.09007 * 117.49648 * 359.97438 * 7 4 2 9 9 C 1.50696 * 117.50285 * 144.99806 * 7 4 2 10 10 O 1.21283 * 120.00025 * 359.91251 * 9 7 4 11 11 N 1.34779 * 120.00286 * 179.91144 * 9 7 4 12 12 C 1.46922 * 120.63168 * 179.97438 * 11 9 7 13 13 C 1.53196 * 108.77606 * 233.58995 * 12 11 9 14 14 C 1.53037 * 109.31040 * 305.36550 * 13 12 11 15 15 C 1.53000 * 109.46000 * 181.38842 * 14 13 12 16 16 C 1.50697 * 109.47525 * 175.00131 * 15 14 13 17 17 H 1.08006 * 119.99782 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00499 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00430 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 119.99738 * 359.97438 * 18 16 15 21 21 H 1.48510 * 109.46913 * 90.00053 * 20 18 16 22 22 H 1.48494 * 109.47296 * 210.00120 * 20 18 16 23 23 H 1.48493 * 109.47214 * 330.00498 * 20 18 16 24 24 C 1.53039 * 109.54101 * 61.36876 * 14 13 12 25 25 C 1.46931 * 120.62785 * 359.97438 * 11 9 7 26 26 H 1.09006 * 109.47360 * 299.99846 * 1 2 3 27 27 H 1.09004 * 109.47164 * 59.99922 * 1 2 3 28 28 H 1.08997 * 109.46841 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47276 * 240.00163 * 2 1 3 30 30 H 1.08994 * 109.47186 * 299.99919 * 3 2 1 31 31 H 1.08996 * 109.46939 * 59.99957 * 3 2 1 32 32 H 1.08997 * 109.47122 * 179.97438 * 3 2 1 33 33 H 1.09002 * 117.49370 * 0.02562 * 6 4 2 34 34 H 1.08998 * 117.51410 * 214.95599 * 6 4 2 35 35 H 1.08999 * 109.58543 * 113.80083 * 12 11 9 36 36 H 1.08996 * 109.58946 * 353.37614 * 12 11 9 37 37 H 1.08999 * 109.50112 * 65.32084 * 13 12 11 38 38 H 1.09004 * 109.49641 * 185.41325 * 13 12 11 39 39 H 1.09006 * 109.46385 * 301.34352 * 14 13 12 40 40 H 1.09003 * 109.47050 * 294.99785 * 15 14 13 41 41 H 1.09007 * 109.47383 * 54.99849 * 15 14 13 42 42 H 0.96992 * 120.00097 * 179.97438 * 19 18 16 43 43 H 1.09000 * 109.50219 * 178.68690 * 24 14 13 44 44 H 1.08994 * 109.49826 * 58.58410 * 24 14 13 45 45 H 1.09000 * 109.57916 * 246.19424 * 25 11 9 46 46 H 1.08997 * 109.58813 * 6.62026 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.4310 -0.5978 2.1448 6 6 2.7425 -2.0667 1.0517 7 6 3.5550 -0.8275 1.4346 8 1 4.1884 -0.3840 0.6663 9 6 4.0908 -0.7542 2.8412 10 8 3.3284 -0.6142 3.7740 11 7 5.4172 -0.8442 3.0627 12 6 5.9546 -0.7739 4.4282 13 6 7.0280 0.3179 4.4801 14 6 8.0808 0.0440 3.4036 15 6 9.1729 1.1131 3.4750 16 6 10.2706 0.7760 2.4992 17 1 10.1969 -0.1124 1.8893 18 6 11.3696 1.6009 2.3856 19 7 12.3273 1.3069 1.5336 20 14 11.4974 3.1369 3.4409 21 1 12.1873 2.8068 4.7140 22 1 12.2712 4.1745 2.7132 23 1 10.1354 3.6503 3.7348 24 6 7.4221 0.0795 2.0227 25 6 6.3532 -1.0146 1.9430 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.6767 1.9564 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 3.1299 1.4426 0.0005 33 1 2.8416 -2.4377 0.0315 34 1 2.5958 -2.8286 1.8172 35 1 6.3961 -1.7335 4.6970 36 1 5.1522 -0.5306 5.1247 37 1 6.5679 1.2895 4.3001 38 1 7.5021 0.3156 5.4616 39 1 8.5232 -0.9383 3.5698 40 1 8.7477 2.0844 3.2221 41 1 9.5823 1.1475 4.4847 42 1 13.1002 1.8874 1.4534 43 1 8.1767 -0.0925 1.2551 44 1 6.9583 1.0533 1.8658 45 1 6.8272 -1.9939 2.0089 46 1 5.8137 -0.9302 0.9996 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000517150280.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:29 Heat of formation + Delta-G solvation = -42.124632 kcal Electronic energy + Delta-G solvation = -22318.234430 eV Core-core repulsion = 19207.311044 eV Total energy + Delta-G solvation = -3110.923387 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.35025 -38.28760 -36.96347 -34.06327 -33.50235 -32.14582 -30.84981 -28.63347 -27.37601 -25.51759 -23.81724 -23.05570 -22.77414 -21.25868 -20.13383 -19.53384 -18.63190 -17.20865 -16.71060 -15.98827 -15.40677 -14.83759 -14.58951 -14.37084 -14.03419 -13.75378 -13.44522 -13.28997 -13.26460 -13.04169 -12.61450 -12.40417 -12.38327 -12.29647 -12.10346 -11.52040 -11.46385 -11.33745 -11.15668 -10.90701 -10.87498 -10.67777 -10.40141 -10.34889 -10.17255 -9.91587 -9.73458 -9.58590 -9.48059 -9.08345 -8.55463 -8.40199 -6.06554 -4.03996 2.55341 3.08333 3.29036 3.37061 3.40846 3.69661 4.31415 4.43595 4.57847 4.59109 4.81239 4.89452 5.04875 5.12891 5.19964 5.27145 5.30910 5.38425 5.39637 5.46014 5.46498 5.54093 5.62227 5.66566 5.68063 5.73268 5.80319 5.87860 5.91275 5.95446 6.01731 6.11219 6.23319 6.27290 6.30020 6.41884 6.61811 6.79028 6.84505 6.94914 7.23167 7.42091 7.56440 7.77873 8.29040 8.51234 8.97785 9.56754 11.06639 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.023846 B = 0.003636 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.927418 B = 7698.958794 C = 8108.765661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.067 4.067 3 C -0.148 4.148 4 C -0.113 4.113 5 H 0.116 0.884 6 C -0.148 4.148 7 C -0.188 4.188 8 H 0.126 0.874 9 C 0.544 3.456 10 O -0.554 6.554 11 N -0.602 5.602 12 C 0.112 3.888 13 C -0.132 4.132 14 C -0.072 4.072 15 C -0.009 4.009 16 C -0.516 4.516 17 H 0.073 0.927 18 C 0.066 3.934 19 N -0.904 5.904 20 Si 0.877 3.123 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.266 1.266 24 C -0.121 4.121 25 C 0.104 3.896 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.071 0.929 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.064 0.936 36 H 0.085 0.915 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.015 0.985 41 H 0.011 0.989 42 H 0.262 0.738 43 H 0.090 0.910 44 H 0.058 0.942 45 H 0.068 0.932 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.160 -4.747 -2.448 20.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.085 4.085 3 C -0.205 4.205 4 C -0.132 4.132 5 H 0.134 0.866 6 C -0.186 4.186 7 C -0.208 4.208 8 H 0.143 0.857 9 C 0.332 3.668 10 O -0.433 6.433 11 N -0.334 5.334 12 C -0.010 4.010 13 C -0.170 4.170 14 C -0.091 4.091 15 C -0.047 4.047 16 C -0.554 4.554 17 H 0.092 0.908 18 C -0.135 4.135 19 N -0.543 5.543 20 Si 0.705 3.295 21 H -0.204 1.204 22 H -0.215 1.215 23 H -0.191 1.191 24 C -0.159 4.159 25 C -0.018 4.018 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.121 0.879 34 H 0.116 0.884 35 H 0.083 0.917 36 H 0.103 0.897 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.033 0.967 41 H 0.029 0.971 42 H 0.072 0.928 43 H 0.108 0.892 44 H 0.076 0.924 45 H 0.086 0.914 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -20.369 -4.608 -2.016 20.981 hybrid contribution 0.570 0.887 0.480 1.158 sum -19.799 -3.721 -1.536 20.205 Atomic orbital electron populations 1.21798 0.94688 1.01794 1.01828 1.20741 0.95895 0.96117 0.95758 1.21831 1.01380 0.95516 1.01762 1.22470 0.92168 0.98366 1.00194 0.86625 1.23080 1.01864 0.90861 1.02783 1.22317 0.96002 1.06182 0.96339 0.85662 1.19620 0.81824 0.75724 0.89626 1.90645 1.56984 1.50794 1.44853 1.48092 1.05622 1.71257 1.08393 1.21643 0.97125 0.99297 0.82916 1.22063 0.96391 0.98167 1.00403 1.21001 0.94676 1.00838 0.92544 1.19620 0.93961 0.94227 0.96866 1.21132 1.02437 1.10396 1.21415 0.90848 1.25024 0.95615 0.97726 0.95134 1.69908 1.09525 1.38531 1.36374 0.86816 0.78456 0.83506 0.80714 1.20373 1.21477 1.19081 1.21916 0.96973 0.97345 0.99675 1.21964 0.91273 1.00075 0.88526 0.92516 0.92610 0.92572 0.91025 0.92656 0.92471 0.92448 0.87871 0.88448 0.91721 0.89682 0.92104 0.91139 0.91740 0.96692 0.97050 0.92789 0.89156 0.92363 0.91369 0.90151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 9.17 37.16 0.34 -0.72 16 2 C -0.07 -0.56 3.07 -90.62 -0.28 -0.84 16 3 C -0.15 -1.32 9.03 37.16 0.34 -0.99 16 4 C -0.11 -1.16 4.66 -90.59 -0.42 -1.58 16 5 H 0.12 1.38 7.64 -51.93 -0.40 0.99 16 6 C -0.15 -1.40 9.89 -26.67 -0.26 -1.66 16 7 C -0.19 -2.14 4.33 -91.75 -0.40 -2.53 16 8 H 0.13 1.30 6.03 -51.92 -0.31 0.99 16 9 C 0.54 8.09 7.48 -10.99 -0.08 8.01 16 10 O -0.55 -9.91 15.67 5.55 0.09 -9.82 16 11 N -0.60 -8.75 2.97 -172.78 -0.51 -9.26 16 12 C 0.11 1.65 6.43 -3.71 -0.02 1.63 16 13 C -0.13 -2.11 5.36 -26.61 -0.14 -2.26 16 14 C -0.07 -1.33 2.10 -90.58 -0.19 -1.52 16 15 C -0.01 -0.22 3.52 -27.88 -0.10 -0.31 16 16 C -0.52 -14.00 8.94 -34.44 -0.31 -14.31 16 17 H 0.07 2.11 7.30 -52.48 -0.38 1.73 16 18 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 19 N -0.90 -27.30 13.96 55.43 0.77 -26.53 16 20 Si 0.88 21.50 27.47 -169.99 -4.67 16.83 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 24 C -0.12 -2.03 5.19 -26.62 -0.14 -2.16 16 25 C 0.10 1.40 6.34 -3.72 -0.02 1.38 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.55 7.90 -51.93 -0.41 0.14 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.55 7.28 -51.93 -0.38 0.17 16 33 H 0.10 0.77 8.05 -51.93 -0.42 0.35 16 34 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.08 1.29 7.01 -51.93 -0.36 0.93 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.01 0.35 7.20 -51.93 -0.37 -0.03 16 41 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 42 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 43 H 0.09 1.66 6.91 -51.93 -0.36 1.31 16 44 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 45 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.08 0.91 5.51 -51.93 -0.29 0.62 16 LS Contribution 356.24 15.07 5.37 5.37 Total: -1.00 -31.05 356.24 -9.06 -40.11 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -8.32 Total: -0.59 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: -1.79 Total: -16.10 kcal Atomic # 7 Polarization: -36.05 SS G_CDS: 0.26 Total: -35.79 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.09 Total: -9.82 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.67 Total: 16.83 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.05 -9.06 -40.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517150280.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.016 kcal (2) G-P(sol) polarization free energy of solvation -31.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds